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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001045 ID=TCONS_00001045|Name=TCONS_00001045|organism=Clytia hemisphaerica|type=transcript|length=138bp
CATAACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAATCAAATT
TCTGGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGattATGCTG
ATGCTGCCATTCAGTCTGACAGCCTGACTGTAAGTGag Run BLAST on NCBI transcript from alignment at sc0000007:963642..970453+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001045 ID=TCONS_00001045|Name=TCONS_00001045|organism=Clytia hemisphaerica|type=transcript|length=6812bp|location=Sequence derived from alignment at sc0000007:963642..970453+ (Clytia hemisphaerica)
CATAACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAATCAAATT
TCTGGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGGTTGGTTGA
TCTTGTCAGTAACCTTGATTAAAATTTTAGTTGTTTTGGGCGTACGGGGG
TCGCCAACACTGAAAATACCAGAACCTCGACacagacaacaacaacaaaa
attgcaaaactcATTCTTTTATCACGGCCCTTACATCTTTAACACCGAAA
CATCGACAAAGAAAGACCTAATAGCGTTACACCGTCAAATTCGTACCCCA
CTCTCATTCGGTGTATCTTGTTCTCATCTAacattactttcactttcact
ctcATTTTAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTGT
AAGTGAGGTTTGTTTTATTTCCAAATCTAATACTCTTTATTGTCTTTCCA
ACGATGTATCTTGTTTTGGTTGTATAAAGACTGCCAACGATGGAGTTACA
GCCGACCCTGCTTGTTCGTACTTTCTAATAATCGAATCTTTTTATAACtc
gtgtttctttttaattccttataaccttataattcTATAATATTTCCGTT
ATTCGAACATATAaggcccgggggggtactaggattgatgggtgtcgggt
atgtgcgtgccagacctctggacccttacccttagagagactgaattttg
gtgaaaaggtgacccttagagagactcagtgtagaaaaacccaaccctta
gagagactttttcacaaaaaatttctataatggGCCAAAGAAATTATCGA
ATTGATAAAACAtgttcttttttttactttagtgtGACAAAGTCTTCAAG
TTATGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACTGTGTCAAAT
CCAAGATTCCAAATGCAAAGTGAAATGTTATTATAAGGTTAGTTTACTTT
ATATATACAATTCCTTCCTATATTCATTCGCAATTCATACCAATCAATAT
TTCTCACTGATGCACAGTATGTAACAGTTTTTCAAAGCTATTCCTCAATC
ATTAAAAATACCCAATTAAAATTTCCCAATTAAGATTtagaattgaaatt
ttgaattcttatttctcttttttctttcattttagtgTGGGCTGGAGCAC
GACTCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTATCACAACTG
TACCAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAATATGTTTAT
ATAAATTTAATCTAATTTTATAATATTATCTTGGAGAAAAGATCGATTAG
TACGGAAATTAACTTTATTTGCAAcaagcttttttgttttttatgctGAT
CTATAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTGTATGGAGGG
CATCTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAGCTACACCAA
TCGGGCCTACTCTTTTTCTAGATATGGATGTAAAGGGAAAGAAAATATTG
CCTGACATTTAAAAGCATTATCTTCCGTAAAAAATTTCTGCACGTGTCTT
CAGCGTCCAAAATATTCGAAGTCTGCCAATGTTCTTGATATTGAAGTTTA
AAACTAAAAATGCCCTTGACATGTTTTCTTCTCGCATATTCTTCGGATTT
TTATGCAATTTCCTTTCCTGGGttttttagagtccacaaagtcttataaa
aatattttgatcatcAAAGCCTTAATGTTCGTTAGTTCGTTCTAATactt
aatgggataaattttcgtggGGACTAAATTTCgtggttgagctcatccgc
gaaattttaagtttttgcgGGGTCTTAAATACACGGCCCTTCACACACAT
TATTGGTAGATTATATTTTCATGATTTGATATGCATTATTAGCTCTTCTT
TGATGCAACCataaacatataaacgactggacatcaaacttctttgtttt
tttttgtataaagcgctgctagcttcgttgccgcctcgttaaaaacctaa
aatgaaacaataaattttgatgatatacctcttTGAAATACCTTGCTAAT
AACGTCAAAACCttgacaaaagtctctgttgttctacttttctcaagtct
tttatctacatcataacaaagataacagaggcaaaatcatcgtcagcttg
tcaaaactccaactaaaatttctaaatttaaaaacaaaaaaaatcagaga
atatacaacatgctccatctcaccaacacaagaaaaatggtttctttttt
tgtttcatgtgaaaaaagtgagggaaatacccaaaagacacgctgggGAT
ACGTATCCCCAAGCCTTAtgggattcaaattatgatgTTCTTATGACGCA
GACTCTAAACTTTGGCAAACTacttttttcaagtcaaaaaaattattgga
gtgacaaaagtgattcacACCATAAATTCACACGCAgatgaaattctgca
tttcagagatGAAAGTGCTGCTAaaatcatagtccgtataaaaaatcCTG
GTCTGGAAGTTtattgttttgactttttgttagctttttcctctGTTAAT
AGtgaagttaagtaaatcggtaaaacgacgacgaacgaaaatttaacagg
ctagtgagtttcaaccaatcaaattttgtattttcactagcctattacat
ttttcgtccgtcgtcgtgattatcctggtatgcttaagGCTATgcttttt
tcgcgttggtgccaAAACTCgagaatattgtcggatttttcatgccaatt
ttgaaatacatgcGACAACGAAGCTCgtttcaaagagacaataaaagata
atCTCctgtcgtttatatgttcatgatgcaacttaatatttcaaaagtag
TTATTTAAtaagtttttgagttttgttcaaAATCATTCCAAATAAAATGC
GCGAattttaatccccgcaaaagtttatcccattaaagtaaacaGAACGT
GTAGTGGGCTATCTCCAAAATAaagatttcttgattttcaacaTTAGCGT
AAGGGGATAAACTCTGGATTCGTGGACACTAATTCCCAAACAAACGCGCT
AATAAGCCAAAGGAAATGAATACTTAATGTGGGGTGAAAGTCCTACGatc
aaatttcctttctttttaagaACTGGTGGCgtattttaattaaaatttga
ttAATTTCAGTTAAAATTAGTCCGTTATAGTTATATGACACCCAATTTAT
TTATCTAGATGGTGTTTCCTTTTCacattttaaacattgaatgtTGAGAA
ATGTTGACGATTTTATTGCAAATTCTTTTGTTCgaaatgatgatgatgat
gatgtttaaTCAGTATCACAGCTGTTTAAATTCATGAAATCcgatttttg
gtgttttatgACAAAAACAAGGTAATAAAAAAGGGAACAGTTTTTTGTCT
CATTCTTTACTTTCTCCACACAACCAACAACACCATGAAGTCATTCACTA
TTTTCGCTTTCTTGGCTTTTGTAGCCTTTGCTTCCGCTGACTTCGCTTTC
GAAGGTAAGATTCAGTCAAAACACGCGCGATGGTGTTTTTCACAAACTAA
ACCTTCAAGTCCAGATGACATACGAGGGCCACCAACGCTCAAATAGACCG
ACATTATTTCATTCGAGCACCACAACACTAACAGAATATAAGGGGCTTAC
ACCGAAACACTTTCAGACCTGAAGCACCCCCTTTTCACttcaaatgtttt
attttaactttcgcaaatttaattTTAGATATGTATGATGGTGGATCAGG
TGATGTCAGTGTAAGTCAGCTCTTCATAATTAAgcggaattaattttggc
gaacgttccctttttgttcaatattttagctggAAAAAGagtaaattgaa
agaaaattaaatttagcgagaacttattttggcgaatgacctatAAATNA
GGGGCTTGTACCGAAACACTTTCAGACCTGAAGCATCGCCCCCAGTTTAC
GTCACCTTATTAGAGAAGTTAACTGAGGAAAATGCGCAAATAATATTTTG
GATCTTCTTTGTAGAACTTTTCACTTCAAGagcccccagcggaccctcaa
ttcacgcaatcacacaATTTTTCCTCGAGTTTTACGCAATAACCCAATAT
TGGTGAAGAATACAACATGGGAACATGAATGGTGTAATAAATTATCATGG
TAATGTGATGACGTATTCCTTATTTCCTGTCTTGAAAATAGTAAATAAGA
AAAATTGAGCCAAATACAGTAAAAGTAATATCTGGTAATATCGATTAATT
AAAAAACTGTTACTAATGGTATCATTTCCTTTTATAGATATTATTACCTC
AATTTTCGTTTGGAGTTTAgattaaaattcataaaatttaatCAGTTTGC
CAGCTGTCAACCTCGTACCCAGGGCGATAAGCTTTCTGATATTAGATAGG
ACGCTTAGACGTAACAGTGAGCTTCCTATTTGCCTCTCATCTAGACTAGC
AACTATATTTTCCCGCGCGGCCGCTGACTGTTCGCCATGGAATCGAGGTT
GGCCAGCTGTATCTATGTTTGAATGTTTTATGAAATGAAcccggggggca
ctcgatctgaaaacgaccatacgttcggcccaaaatttggcttctaaaat
cggacccttacagtgcagtgaatttccatgaaaaatcatacccttacagt
gcactttttcaaaatttctcgcccgtaagggcgaatttttgcacttttcc
aagaaaatgtggaatttttcctccaaaattgaccaattttgtgccaattt
accaaaaaattggccttttatcacaatttcctacccttacagtgcagatc
agtgcagttttgtaatttcctacccttacagtgcagatcagtgcagtttt
gtaatttcctacccttacagtgcagatcagtgcagttttgtaatttccta
cccttacagtgcagatcagtgcagttttgtaatttcctacccttacagtg
cagatcagtgcagttttgtaatttcctacccttacagtgcactagctgaa
ctatgaaaaaacctacccttaagggccgatcGGCTGGTAGGTCATTTTCC
Ttgagggcccccccccccctccccggggaaatgaatcattaaaaataaac
ataaaacaGCAATAAATCGTCTTCAAACACAAACATTTTCTCTCTGGtga
aattctaaaaactttatcaCAGTTCAGCAACCATGTATTCGTTGAAAGTC
TGCATCTTTTTGGCTTTTGTTACCCTCGTCATTTCTCAGGTTAGGATGAT
ATATGCTCGTTGTATGTTAGTGTATACAGATACTTATTGTGCGTTTCTTT
TTGGTTGTGGTAGTTGAAAAGCTGGACTGAAATTTCGATGAGCATGTTTC
ATTTTCTCGTTTTAGATTCCACTGATTCCAATGGCTCTGGTAACTTAACG
GTGAGTTTTGAAGAGAAATTCTCCTTGCAAAGTGAAACTTCCGTCGATTA
ATGTTGGAATGACTAATAATCAAAATCGTTGAAGTTTGTGATGATTATTA
CGGATATGTAGAAGAGAGTTTTCAGTTCGTTGAGCCCCCCTGAGCCGAAC
TTACACACTTAAACCCTTACTTTATATCATTCATTGCTATTTTTTCTTGA
CACTTATTAGTGCAGCGAGAAATCAAACGAGTGTTGGTCGAAAGCGAAAC
ATCTTGCAGACCGAGTCACGTGTCAAATCGGACATGCCAAGTGTAAAGCC
AAGTGCAAATATGAGGTAAATGTTAACAGCTCTCTAAATACAAGATTTTT
ATGAGTCCATTTGACAGTCATAACTCAAAAAAAGTTCGActttggtcaaa
ttttcaattgcAACATCGCCTGGCCGGCAAATTTTTGACCAAGAACGCAA
TCGATACTATCTCGCACCTTTTTCCAAAGTTTCAAAACACGTATTTgtta
aaatgaaagtgaaacaTGGGTGTTATGGTGTATTCTAAAGGTAcattctt
tttcttgtttttcagtGTGGTTTGGCCTATGATGCTTGCACCGGATTGAC
CGGAGCATTTATACACTGTTTGTCAAAAGTTTCAATTTGTTTTAGacaat
gtgaaaaataaatgatAATAAAGTTGACGAATGAAAATTATAATGTGTTT
AATTTTTCTGTGTTTGGGTGGGATCAATCTTTTGCTGTCTTACGTTTTAT
ACAACAAGGCTCAGATTCAAAATTGATCGGTAGTAGCCTTAAAAGCAGGA
TTCTCTTTCGCTCTCGTTTTTCGAACTTAAAATAATATCTCAATCATTAT
GGAGGGGATGCTTGATGCATTTATTTCAAAGGTCCGctaaataaaataag
aaaatgatgtAGAAGAAGAATTTTAATTACAGCTACAGATTTAATAGTAT
CTTCAGCTAAGCATATATTTGCTTTCactttattacataaaagaaagaaa
tttccaTCTCTCGACAAATTGGATTTCATAACTTCCTCAAGGCTTATTCA
GGTTCCATCATGGCTTCAATCAAAATTTCTGGTCTTCTTAACTTTCCTCG
TACTCGCAACTTCAAAAGGTTTGTTGATCTTGTCAGTAACCTTGATTAAA
ATTTTAGTTGTTTTGGGCGTACGGGGGTCGCCAACACTGAAATACCAGAA
CGTCGACACAGAcagcaaaagtggcaaaaatccTTTTGGACACTAAAATA
ACCTCCCCTTTTCCCGCAAACACCGAAACATCAACAGAGATTCCGGTACA
AATCCTCCCCCCCCCCAATCCTGTGTATTTGTTCTCATCTAacatcactt
tcacttttgttttagattATGCTGATGCTGCCATTCAGTCTGACAGCCTG
ACTGTAAGTGag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001045-exon-sc0000007-1491911889:963642..963732 | TCONS_00001045-exon-sc0000007-1491911889:963642..963732 | Clytia hemisphaerica | exon |
| TCONS_00001045-exon-sc0000007-1510915933:963642..963732 | TCONS_00001045-exon-sc0000007-1510915933:963642..963732 | Clytia hemisphaerica | exon |
| TCONS_00001045-exon-sc0000007-1575043694:963642..963732 | TCONS_00001045-exon-sc0000007-1575043694:963642..963732 | Clytia hemisphaerica | exon |
| TCONS_00001045-exon-sc0000007-1491911889:970407..970453 | TCONS_00001045-exon-sc0000007-1491911889:970407..970453 | Clytia hemisphaerica | exon |
| TCONS_00001045-exon-sc0000007-1510915933:970407..970453 | TCONS_00001045-exon-sc0000007-1510915933:970407..970453 | Clytia hemisphaerica | exon |
| TCONS_00001045-exon-sc0000007-1575043694:970407..970453 | TCONS_00001045-exon-sc0000007-1575043694:970407..970453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:963642..970453 + |
Blast
The following BLAST results are available for this feature:
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