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TCONS_00001045 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001045
Unique NameTCONS_00001045
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length138

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001045 ID=TCONS_00001045|Name=TCONS_00001045|organism=Clytia hemisphaerica|type=transcript|length=138bp
CATAACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAATCAAATT
TCTGGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGattATGCTG
ATGCTGCCATTCAGTCTGACAGCCTGACTGTAAGTGag
Run BLAST on NCBI

transcript from alignment at sc0000007:963642..970453+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001045 ID=TCONS_00001045|Name=TCONS_00001045|organism=Clytia hemisphaerica|type=transcript|length=6812bp|location=Sequence derived from alignment at sc0000007:963642..970453+ (Clytia hemisphaerica)
CATAACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAATCAAATT TCTGGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGGTTGGTTGA TCTTGTCAGTAACCTTGATTAAAATTTTAGTTGTTTTGGGCGTACGGGGG TCGCCAACACTGAAAATACCAGAACCTCGACacagacaacaacaacaaaa attgcaaaactcATTCTTTTATCACGGCCCTTACATCTTTAACACCGAAA CATCGACAAAGAAAGACCTAATAGCGTTACACCGTCAAATTCGTACCCCA CTCTCATTCGGTGTATCTTGTTCTCATCTAacattactttcactttcact ctcATTTTAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTGT AAGTGAGGTTTGTTTTATTTCCAAATCTAATACTCTTTATTGTCTTTCCA ACGATGTATCTTGTTTTGGTTGTATAAAGACTGCCAACGATGGAGTTACA GCCGACCCTGCTTGTTCGTACTTTCTAATAATCGAATCTTTTTATAACtc gtgtttctttttaattccttataaccttataattcTATAATATTTCCGTT ATTCGAACATATAaggcccgggggggtactaggattgatgggtgtcgggt atgtgcgtgccagacctctggacccttacccttagagagactgaattttg gtgaaaaggtgacccttagagagactcagtgtagaaaaacccaaccctta gagagactttttcacaaaaaatttctataatggGCCAAAGAAATTATCGA ATTGATAAAACAtgttcttttttttactttagtgtGACAAAGTCTTCAAG TTATGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACTGTGTCAAAT CCAAGATTCCAAATGCAAAGTGAAATGTTATTATAAGGTTAGTTTACTTT ATATATACAATTCCTTCCTATATTCATTCGCAATTCATACCAATCAATAT TTCTCACTGATGCACAGTATGTAACAGTTTTTCAAAGCTATTCCTCAATC ATTAAAAATACCCAATTAAAATTTCCCAATTAAGATTtagaattgaaatt ttgaattcttatttctcttttttctttcattttagtgTGGGCTGGAGCAC GACTCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTATCACAACTG TACCAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAATATGTTTAT ATAAATTTAATCTAATTTTATAATATTATCTTGGAGAAAAGATCGATTAG TACGGAAATTAACTTTATTTGCAAcaagcttttttgttttttatgctGAT CTATAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTGTATGGAGGG CATCTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAGCTACACCAA TCGGGCCTACTCTTTTTCTAGATATGGATGTAAAGGGAAAGAAAATATTG CCTGACATTTAAAAGCATTATCTTCCGTAAAAAATTTCTGCACGTGTCTT CAGCGTCCAAAATATTCGAAGTCTGCCAATGTTCTTGATATTGAAGTTTA AAACTAAAAATGCCCTTGACATGTTTTCTTCTCGCATATTCTTCGGATTT TTATGCAATTTCCTTTCCTGGGttttttagagtccacaaagtcttataaa aatattttgatcatcAAAGCCTTAATGTTCGTTAGTTCGTTCTAATactt aatgggataaattttcgtggGGACTAAATTTCgtggttgagctcatccgc gaaattttaagtttttgcgGGGTCTTAAATACACGGCCCTTCACACACAT TATTGGTAGATTATATTTTCATGATTTGATATGCATTATTAGCTCTTCTT TGATGCAACCataaacatataaacgactggacatcaaacttctttgtttt tttttgtataaagcgctgctagcttcgttgccgcctcgttaaaaacctaa aatgaaacaataaattttgatgatatacctcttTGAAATACCTTGCTAAT AACGTCAAAACCttgacaaaagtctctgttgttctacttttctcaagtct tttatctacatcataacaaagataacagaggcaaaatcatcgtcagcttg tcaaaactccaactaaaatttctaaatttaaaaacaaaaaaaatcagaga atatacaacatgctccatctcaccaacacaagaaaaatggtttctttttt tgtttcatgtgaaaaaagtgagggaaatacccaaaagacacgctgggGAT ACGTATCCCCAAGCCTTAtgggattcaaattatgatgTTCTTATGACGCA GACTCTAAACTTTGGCAAACTacttttttcaagtcaaaaaaattattgga gtgacaaaagtgattcacACCATAAATTCACACGCAgatgaaattctgca tttcagagatGAAAGTGCTGCTAaaatcatagtccgtataaaaaatcCTG GTCTGGAAGTTtattgttttgactttttgttagctttttcctctGTTAAT AGtgaagttaagtaaatcggtaaaacgacgacgaacgaaaatttaacagg ctagtgagtttcaaccaatcaaattttgtattttcactagcctattacat ttttcgtccgtcgtcgtgattatcctggtatgcttaagGCTATgcttttt tcgcgttggtgccaAAACTCgagaatattgtcggatttttcatgccaatt ttgaaatacatgcGACAACGAAGCTCgtttcaaagagacaataaaagata atCTCctgtcgtttatatgttcatgatgcaacttaatatttcaaaagtag TTATTTAAtaagtttttgagttttgttcaaAATCATTCCAAATAAAATGC GCGAattttaatccccgcaaaagtttatcccattaaagtaaacaGAACGT GTAGTGGGCTATCTCCAAAATAaagatttcttgattttcaacaTTAGCGT AAGGGGATAAACTCTGGATTCGTGGACACTAATTCCCAAACAAACGCGCT AATAAGCCAAAGGAAATGAATACTTAATGTGGGGTGAAAGTCCTACGatc aaatttcctttctttttaagaACTGGTGGCgtattttaattaaaatttga ttAATTTCAGTTAAAATTAGTCCGTTATAGTTATATGACACCCAATTTAT TTATCTAGATGGTGTTTCCTTTTCacattttaaacattgaatgtTGAGAA ATGTTGACGATTTTATTGCAAATTCTTTTGTTCgaaatgatgatgatgat gatgtttaaTCAGTATCACAGCTGTTTAAATTCATGAAATCcgatttttg gtgttttatgACAAAAACAAGGTAATAAAAAAGGGAACAGTTTTTTGTCT CATTCTTTACTTTCTCCACACAACCAACAACACCATGAAGTCATTCACTA TTTTCGCTTTCTTGGCTTTTGTAGCCTTTGCTTCCGCTGACTTCGCTTTC GAAGGTAAGATTCAGTCAAAACACGCGCGATGGTGTTTTTCACAAACTAA ACCTTCAAGTCCAGATGACATACGAGGGCCACCAACGCTCAAATAGACCG ACATTATTTCATTCGAGCACCACAACACTAACAGAATATAAGGGGCTTAC ACCGAAACACTTTCAGACCTGAAGCACCCCCTTTTCACttcaaatgtttt attttaactttcgcaaatttaattTTAGATATGTATGATGGTGGATCAGG TGATGTCAGTGTAAGTCAGCTCTTCATAATTAAgcggaattaattttggc gaacgttccctttttgttcaatattttagctggAAAAAGagtaaattgaa agaaaattaaatttagcgagaacttattttggcgaatgacctatAAATNA GGGGCTTGTACCGAAACACTTTCAGACCTGAAGCATCGCCCCCAGTTTAC GTCACCTTATTAGAGAAGTTAACTGAGGAAAATGCGCAAATAATATTTTG GATCTTCTTTGTAGAACTTTTCACTTCAAGagcccccagcggaccctcaa ttcacgcaatcacacaATTTTTCCTCGAGTTTTACGCAATAACCCAATAT TGGTGAAGAATACAACATGGGAACATGAATGGTGTAATAAATTATCATGG TAATGTGATGACGTATTCCTTATTTCCTGTCTTGAAAATAGTAAATAAGA AAAATTGAGCCAAATACAGTAAAAGTAATATCTGGTAATATCGATTAATT AAAAAACTGTTACTAATGGTATCATTTCCTTTTATAGATATTATTACCTC AATTTTCGTTTGGAGTTTAgattaaaattcataaaatttaatCAGTTTGC CAGCTGTCAACCTCGTACCCAGGGCGATAAGCTTTCTGATATTAGATAGG ACGCTTAGACGTAACAGTGAGCTTCCTATTTGCCTCTCATCTAGACTAGC AACTATATTTTCCCGCGCGGCCGCTGACTGTTCGCCATGGAATCGAGGTT GGCCAGCTGTATCTATGTTTGAATGTTTTATGAAATGAAcccggggggca ctcgatctgaaaacgaccatacgttcggcccaaaatttggcttctaaaat cggacccttacagtgcagtgaatttccatgaaaaatcatacccttacagt gcactttttcaaaatttctcgcccgtaagggcgaatttttgcacttttcc aagaaaatgtggaatttttcctccaaaattgaccaattttgtgccaattt accaaaaaattggccttttatcacaatttcctacccttacagtgcagatc agtgcagttttgtaatttcctacccttacagtgcagatcagtgcagtttt gtaatttcctacccttacagtgcagatcagtgcagttttgtaatttccta cccttacagtgcagatcagtgcagttttgtaatttcctacccttacagtg cagatcagtgcagttttgtaatttcctacccttacagtgcactagctgaa ctatgaaaaaacctacccttaagggccgatcGGCTGGTAGGTCATTTTCC Ttgagggcccccccccccctccccggggaaatgaatcattaaaaataaac ataaaacaGCAATAAATCGTCTTCAAACACAAACATTTTCTCTCTGGtga aattctaaaaactttatcaCAGTTCAGCAACCATGTATTCGTTGAAAGTC TGCATCTTTTTGGCTTTTGTTACCCTCGTCATTTCTCAGGTTAGGATGAT ATATGCTCGTTGTATGTTAGTGTATACAGATACTTATTGTGCGTTTCTTT TTGGTTGTGGTAGTTGAAAAGCTGGACTGAAATTTCGATGAGCATGTTTC ATTTTCTCGTTTTAGATTCCACTGATTCCAATGGCTCTGGTAACTTAACG GTGAGTTTTGAAGAGAAATTCTCCTTGCAAAGTGAAACTTCCGTCGATTA ATGTTGGAATGACTAATAATCAAAATCGTTGAAGTTTGTGATGATTATTA CGGATATGTAGAAGAGAGTTTTCAGTTCGTTGAGCCCCCCTGAGCCGAAC TTACACACTTAAACCCTTACTTTATATCATTCATTGCTATTTTTTCTTGA CACTTATTAGTGCAGCGAGAAATCAAACGAGTGTTGGTCGAAAGCGAAAC ATCTTGCAGACCGAGTCACGTGTCAAATCGGACATGCCAAGTGTAAAGCC AAGTGCAAATATGAGGTAAATGTTAACAGCTCTCTAAATACAAGATTTTT ATGAGTCCATTTGACAGTCATAACTCAAAAAAAGTTCGActttggtcaaa ttttcaattgcAACATCGCCTGGCCGGCAAATTTTTGACCAAGAACGCAA TCGATACTATCTCGCACCTTTTTCCAAAGTTTCAAAACACGTATTTgtta aaatgaaagtgaaacaTGGGTGTTATGGTGTATTCTAAAGGTAcattctt tttcttgtttttcagtGTGGTTTGGCCTATGATGCTTGCACCGGATTGAC CGGAGCATTTATACACTGTTTGTCAAAAGTTTCAATTTGTTTTAGacaat gtgaaaaataaatgatAATAAAGTTGACGAATGAAAATTATAATGTGTTT AATTTTTCTGTGTTTGGGTGGGATCAATCTTTTGCTGTCTTACGTTTTAT ACAACAAGGCTCAGATTCAAAATTGATCGGTAGTAGCCTTAAAAGCAGGA TTCTCTTTCGCTCTCGTTTTTCGAACTTAAAATAATATCTCAATCATTAT GGAGGGGATGCTTGATGCATTTATTTCAAAGGTCCGctaaataaaataag aaaatgatgtAGAAGAAGAATTTTAATTACAGCTACAGATTTAATAGTAT CTTCAGCTAAGCATATATTTGCTTTCactttattacataaaagaaagaaa tttccaTCTCTCGACAAATTGGATTTCATAACTTCCTCAAGGCTTATTCA GGTTCCATCATGGCTTCAATCAAAATTTCTGGTCTTCTTAACTTTCCTCG TACTCGCAACTTCAAAAGGTTTGTTGATCTTGTCAGTAACCTTGATTAAA ATTTTAGTTGTTTTGGGCGTACGGGGGTCGCCAACACTGAAATACCAGAA CGTCGACACAGAcagcaaaagtggcaaaaatccTTTTGGACACTAAAATA ACCTCCCCTTTTCCCGCAAACACCGAAACATCAACAGAGATTCCGGTACA AATCCTCCCCCCCCCCAATCCTGTGTATTTGTTCTCATCTAacatcactt tcacttttgttttagattATGCTGATGCTGCCATTCAGTCTGACAGCCTG ACTGTAAGTGag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000593XLOC_000593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001045-exon-sc0000007-1491911889:963642..963732TCONS_00001045-exon-sc0000007-1491911889:963642..963732Clytia hemisphaericaexon
TCONS_00001045-exon-sc0000007-1510915933:963642..963732TCONS_00001045-exon-sc0000007-1510915933:963642..963732Clytia hemisphaericaexon
TCONS_00001045-exon-sc0000007-1575043694:963642..963732TCONS_00001045-exon-sc0000007-1575043694:963642..963732Clytia hemisphaericaexon
TCONS_00001045-exon-sc0000007-1491911889:970407..970453TCONS_00001045-exon-sc0000007-1491911889:970407..970453Clytia hemisphaericaexon
TCONS_00001045-exon-sc0000007-1510915933:970407..970453TCONS_00001045-exon-sc0000007-1510915933:970407..970453Clytia hemisphaericaexon
TCONS_00001045-exon-sc0000007-1575043694:970407..970453TCONS_00001045-exon-sc0000007-1575043694:970407..970453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:963642..970453 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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