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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001044 ID=TCONS_00001044|Name=TCONS_00001044|organism=Clytia hemisphaerica|type=transcript|length=327bp
ATCGTCTTCATACACCGATTTTCTCTCTGgttaaattctaaaaactttat
caCAGTTCAGCAACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTT
TGTTACCCTCGTCATTTCTCAAGCTTCCACTGATGTCAATGGCTCTGGTA
ACTTGACGTGCAGCGTGAAATCAAACGAGTGTTGGTCGAAAGCGAAACAT
CTCCCAGACCGAGTCACGTGTCAAATCGGACATGCTACGTGTAGAGCCAA
GTGCAAATATGAGtGTGGTTTGGCCTATGATGCTTGCACCGGATTGACCG
GAGCATTTATACACTGTTTGTCAAAAG Run BLAST on NCBI transcript from alignment at sc0000007:961333..969670+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001044 ID=TCONS_00001044|Name=TCONS_00001044|organism=Clytia hemisphaerica|type=transcript|length=8338bp|location=Sequence derived from alignment at sc0000007:961333..969670+ (Clytia hemisphaerica)
ATCGTCTTCATACACCGATTTTCTCTCTGgttaaattctaaaaactttat
caCAGTTCAGCAACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTT
TGTTACCCTCGTCATTTCTCAAGGTTAGGATGATATATGCTCGTTGTATG
GTAGTGTTAGGGTATATCTGTTGTGTGTTCCTTTTTGGTTGAAATGGTGG
ACTGTTGATGAAAATTTCGATGAGCATGTTTCATTTTCTCGTTTTAGCTT
CCACTGATGTCAATGGCTCTGGTAACTTGACGGTGAGTTTTGAAGAGAAA
TTGTGCTTGCAAAGTGAAACTTCCGTCGATTAATGTTGGAATGAGTAATA
ATCAAATCGTTGAAGTTTATGATGATTATTACGGATATGTAGAAGAGAGT
TTTCAGTTTGCTGAGCCCCCTTGAGCCGAACTCACACACTTAAACCCTTA
CTTTATATCATTCATTGCTATTTTTTCTTGACACTTTAGTGCAGCGTGAA
ATCAAACGAGTGTTGGTCGAAAGCGAAACATCTCCCAGACCGAGTCACGT
GTCAAATCGGACATGCTACGTGTAGAGCCAAGTGCAAATATGAGGTAAAA
GTTAACACATCTCTAAATACAAGATTTTTATGCGTCCATTTGACAGTCAT
AACTCAAAAAAATTCGGCTTTGGGCAAATTTTCAATCGCAACCTCGCCTG
GCCGGCAAATTTTTGACAAAGAACGCAATCGATACTATCTCGCACATTTT
TCCAAAGTTTCAAAACACGTATTTGTTAAATTGGTACTCAAAATGAAAAG
TGAAACATTTGTGTTATGGTGTGttgtgcgcagatatgtaatttttgcgc
agattatgtaatttctgcgcagatatgtaatttctgcgcagatatgtaat
tattttgcgcagatatgtaatttctgcgcaaatatgtaattattttgcgc
aactatgtaatttcgaactgcgcagatatgtaattaaacttctgcgcaga
tatgtaaaacacgatctttaaaatcaatggtacCCCCTTGATAGCTTTTA
CCATTAAAACCAAACTCCGAAAGCTAATAATTATTGGTTtaggagttatg
aattgtgttcttataaagttgatgtttgtgtttgtgtttatgtttgcttt
gaaagaaccgatcaccgaaagctaatatctattggtttgagagttatgaa
ttgtgttcttataaagttgatgtttgtgtttgtgtttatgtttgctttga
aagaaccgatcaccgaaagctaatatctattggtttgagagttatgaatt
gtgttcttataaagttgatgcttataagaaaaataaatatttccagCTTA
AGCACCatcctatgtttgctttgaaagaaccgatcaccgaaagctaatat
ctattggtttgagagttatgaattgtattcttataaagttaatgcttata
agaaaaataaatttttccaagcactatcctatgtttgctttgatagaacc
aaacgccgaaagccaatatcactttgataaaaagatattgacttgtttct
tataaagatgatgcttataataaaaacaacaatcgcCAAATGTTTGCCTT
AGTCCAAGAACAATGTTCaagatattacttcttgtatgtgaaaaattaat
gttaaAATTGAGTCAGTTTTtcaatctgcgcagaaatttaattacatatc
tgcgcagctcaaaattacatagttgcgcaaaataattacatatttgcgca
gaaattacatatcttcGCAAAATAAtcacatatctgcgcagaaattacat
atctgcgcataaTATTGTGTATTCTAAAAGTacatttattttcttgtttt
tcagtGTGGTTTGGCTTATGATGCTTGCATCGAAGGATTTATACCCTGTT
tctcaaaatattcaatttgtTCTAaacaatgtgaaaaataaatgatAATA
AAGTTGACAAATGTAAATTATTATGTGTTCCATTTTTCTGTGTTTGGGTA
GGATCAATCTTTTGCTGTGTCACGTTTTATACAACAAGGCTCAGATTCAA
AATTGATGGGTGGTAGCCTTAAAAGCAGGATTCTCTTTTGCTCTCGTTTT
TCGAACTTAAAATAATATCTCATCAATCATTAGGGAGGGGTTGTTTGATG
CATTTATTTCAAAGGTCCGctaaataaaataagaaaatgatgtAGAAGAA
GAATTTTAATTACAGCTACAGATTTAATAATATCTTCAGCTAAGCATATA
TTTGCTTTCactttattacataaaagaaggAAATTTCCATTTCTCGGTAA
ATTGGATTTCATAACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTC
AATCAAATTTCTGGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAG
GTTGGTTGATCTTGTCAGTAACCTTGATTAAAATTTTAGTTGTTTTGGGC
GTACGGGGGTCGCCAACACTGAAAATACCAGAACCTCGACacagacaaca
acaacaaaaattgcaaaactcATTCTTTTATCACGGCCCTTACATCTTTA
ACACCGAAACATCGACAAAGAAAGACCTAATAGCGTTACACCGTCAAATT
CGTACCCCACTCTCATTCGGTGTATCTTGTTCTCATCTAacattactttc
actttcactctcATTTTAGATTATGCTGATGCTGCCATTCAGTCTGACAG
CCTGATTGTAAGTGAGGTTTGTTTTATTTCCAAATCTAATACTCTTTATT
GTCTTTCCAACGATGTATCTTGTTTTGGTTGTATAAAGACTGCCAACGAT
GGAGTTACAGCCGACCCTGCTTGTTCGTACTTTCTAATAATCGAATCTTT
TTATAACtcgtgtttctttttaattccttataaccttataattcTATAAT
ATTTCCGTTATTCGAACATATAaggcccgggggggtactaggattgatgg
gtgtcgggtatgtgcgtgccagacctctggacccttacccttagagagac
tgaattttggtgaaaaggtgacccttagagagactcagtgtagaaaaacc
caacccttagagagactttttcacaaaaaatttctataatggGCCAAAGA
AATTATCGAATTGATAAAACAtgttcttttttttactttagtgtGACAAA
GTCTTCAAGTTATGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACT
GTGTCAAATCCAAGATTCCAAATGCAAAGTGAAATGTTATTATAAGGTTA
GTTTACTTTATATATACAATTCCTTCCTATATTCATTCGCAATTCATACC
AATCAATATTTCTCACTGATGCACAGTATGTAACAGTTTTTCAAAGCTAT
TCCTCAATCATTAAAAATACCCAATTAAAATTTCCCAATTAAGATTtaga
attgaaattttgaattcttatttctcttttttctttcattttagtgTGGG
CTGGAGCACGACTCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTA
TCACAACTGTACCAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAA
TATGTTTATATAAATTTAATCTAATTTTATAATATTATCTTGGAGAAAAG
ATCGATTAGTACGGAAATTAACTTTATTTGCAAcaagcttttttgttttt
tatgctGATCTATAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTG
TATGGAGGGCATCTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAG
CTACACCAATCGGGCCTACTCTTTTTCTAGATATGGATGTAAAGGGAAAG
AAAATATTGCCTGACATTTAAAAGCATTATCTTCCGTAAAAAATTTCTGC
ACGTGTCTTCAGCGTCCAAAATATTCGAAGTCTGCCAATGTTCTTGATAT
TGAAGTTTAAAACTAAAAATGCCCTTGACATGTTTTCTTCTCGCATATTC
TTCGGATTTTTATGCAATTTCCTTTCCTGGGttttttagagtccacaaag
tcttataaaaatattttgatcatcAAAGCCTTAATGTTCGTTAGTTCGTT
CTAATacttaatgggataaattttcgtggGGACTAAATTTCgtggttgag
ctcatccgcgaaattttaagtttttgcgGGGTCTTAAATACACGGCCCTT
CACACACATTATTGGTAGATTATATTTTCATGATTTGATATGCATTATTA
GCTCTTCTTTGATGCAACCataaacatataaacgactggacatcaaactt
ctttgtttttttttgtataaagcgctgctagcttcgttgccgcctcgtta
aaaacctaaaatgaaacaataaattttgatgatatacctcttTGAAATAC
CTTGCTAATAACGTCAAAACCttgacaaaagtctctgttgttctactttt
ctcaagtcttttatctacatcataacaaagataacagaggcaaaatcatc
gtcagcttgtcaaaactccaactaaaatttctaaatttaaaaacaaaaaa
aatcagagaatatacaacatgctccatctcaccaacacaagaaaaatggt
ttctttttttgtttcatgtgaaaaaagtgagggaaatacccaaaagacac
gctgggGATACGTATCCCCAAGCCTTAtgggattcaaattatgatgTTCT
TATGACGCAGACTCTAAACTTTGGCAAACTacttttttcaagtcaaaaaa
attattggagtgacaaaagtgattcacACCATAAATTCACACGCAgatga
aattctgcatttcagagatGAAAGTGCTGCTAaaatcatagtccgtataa
aaaatcCTGGTCTGGAAGTTtattgttttgactttttgttagctttttcc
tctGTTAATAGtgaagttaagtaaatcggtaaaacgacgacgaacgaaaa
tttaacaggctagtgagtttcaaccaatcaaattttgtattttcactagc
ctattacatttttcgtccgtcgtcgtgattatcctggtatgcttaagGCT
ATgcttttttcgcgttggtgccaAAACTCgagaatattgtcggatttttc
atgccaattttgaaatacatgcGACAACGAAGCTCgtttcaaagagacaa
taaaagataatCTCctgtcgtttatatgttcatgatgcaacttaatattt
caaaagtagTTATTTAAtaagtttttgagttttgttcaaAATCATTCCAA
ATAAAATGCGCGAattttaatccccgcaaaagtttatcccattaaagtaa
acaGAACGTGTAGTGGGCTATCTCCAAAATAaagatttcttgattttcaa
caTTAGCGTAAGGGGATAAACTCTGGATTCGTGGACACTAATTCCCAAAC
AAACGCGCTAATAAGCCAAAGGAAATGAATACTTAATGTGGGGTGAAAGT
CCTACGatcaaatttcctttctttttaagaACTGGTGGCgtattttaatt
aaaatttgattAATTTCAGTTAAAATTAGTCCGTTATAGTTATATGACAC
CCAATTTATTTATCTAGATGGTGTTTCCTTTTCacattttaaacattgaa
tgtTGAGAAATGTTGACGATTTTATTGCAAATTCTTTTGTTCgaaatgat
gatgatgatgatgtttaaTCAGTATCACAGCTGTTTAAATTCATGAAATC
cgatttttggtgttttatgACAAAAACAAGGTAATAAAAAAGGGAACAGT
TTTTTGTCTCATTCTTTACTTTCTCCACACAACCAACAACACCATGAAGT
CATTCACTATTTTCGCTTTCTTGGCTTTTGTAGCCTTTGCTTCCGCTGAC
TTCGCTTTCGAAGGTAAGATTCAGTCAAAACACGCGCGATGGTGTTTTTC
ACAAACTAAACCTTCAAGTCCAGATGACATACGAGGGCCACCAACGCTCA
AATAGACCGACATTATTTCATTCGAGCACCACAACACTAACAGAATATAA
GGGGCTTACACCGAAACACTTTCAGACCTGAAGCACCCCCTTTTCACttc
aaatgttttattttaactttcgcaaatttaattTTAGATATGTATGATGG
TGGATCAGGTGATGTCAGTGTAAGTCAGCTCTTCATAATTAAgcggaatt
aattttggcgaacgttccctttttgttcaatattttagctggAAAAAGag
taaattgaaagaaaattaaatttagcgagaacttattttggcgaatgacc
tatAAATNAGGGGCTTGTACCGAAACACTTTCAGACCTGAAGCATCGCCC
CCAGTTTACGTCACCTTATTAGAGAAGTTAACTGAGGAAAATGCGCAAAT
AATATTTTGGATCTTCTTTGTAGAACTTTTCACTTCAAGagcccccagcg
gaccctcaattcacgcaatcacacaATTTTTCCTCGAGTTTTACGCAATA
ACCCAATATTGGTGAAGAATACAACATGGGAACATGAATGGTGTAATAAA
TTATCATGGTAATGTGATGACGTATTCCTTATTTCCTGTCTTGAAAATAG
TAAATAAGAAAAATTGAGCCAAATACAGTAAAAGTAATATCTGGTAATAT
CGATTAATTAAAAAACTGTTACTAATGGTATCATTTCCTTTTATAGATAT
TATTACCTCAATTTTCGTTTGGAGTTTAgattaaaattcataaaatttaa
tCAGTTTGCCAGCTGTCAACCTCGTACCCAGGGCGATAAGCTTTCTGATA
TTAGATAGGACGCTTAGACGTAACAGTGAGCTTCCTATTTGCCTCTCATC
TAGACTAGCAACTATATTTTCCCGCGCGGCCGCTGACTGTTCGCCATGGA
ATCGAGGTTGGCCAGCTGTATCTATGTTTGAATGTTTTATGAAATGAAcc
cggggggcactcgatctgaaaacgaccatacgttcggcccaaaatttggc
ttctaaaatcggacccttacagtgcagtgaatttccatgaaaaatcatac
ccttacagtgcactttttcaaaatttctcgcccgtaagggcgaatttttg
cacttttccaagaaaatgtggaatttttcctccaaaattgaccaattttg
tgccaatttaccaaaaaattggccttttatcacaatttcctacccttaca
gtgcagatcagtgcagttttgtaatttcctacccttacagtgcagatcag
tgcagttttgtaatttcctacccttacagtgcagatcagtgcagttttgt
aatttcctacccttacagtgcagatcagtgcagttttgtaatttcctacc
cttacagtgcagatcagtgcagttttgtaatttcctacccttacagtgca
ctagctgaactatgaaaaaacctacccttaagggccgatcGGCTGGTAGG
TCATTTTCCTtgagggcccccccccccctccccggggaaatgaatcatta
aaaataaacataaaacaGCAATAAATCGTCTTCAAACACAAACATTTTCT
CTCTGGtgaaattctaaaaactttatcaCAGTTCAGCAACCATGTATTCG
TTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGTCATTTCTCAGGT
TAGGATGATATATGCTCGTTGTATGTTAGTGTATACAGATACTTATTGTG
CGTTTCTTTTTGGTTGTGGTAGTTGAAAAGCTGGACTGAAATTTCGATGA
GCATGTTTCATTTTCTCGTTTTAGATTCCACTGATTCCAATGGCTCTGGT
AACTTAACGGTGAGTTTTGAAGAGAAATTCTCCTTGCAAAGTGAAACTTC
CGTCGATTAATGTTGGAATGACTAATAATCAAAATCGTTGAAGTTTGTGA
TGATTATTACGGATATGTAGAAGAGAGTTTTCAGTTCGTTGAGCCCCCCT
GAGCCGAACTTACACACTTAAACCCTTACTTTATATCATTCATTGCTATT
TTTTCTTGACACTTATTAGTGCAGCGAGAAATCAAACGAGTGTTGGTCGA
AAGCGAAACATCTTGCAGACCGAGTCACGTGTCAAATCGGACATGCCAAG
TGTAAAGCCAAGTGCAAATATGAGGTAAATGTTAACAGCTCTCTAAATAC
AAGATTTTTATGAGTCCATTTGACAGTCATAACTCAAAAAAAGTTCGAct
ttggtcaaattttcaattgcAACATCGCCTGGCCGGCAAATTTTTGACCA
AGAACGCAATCGATACTATCTCGCACCTTTTTCCAAAGTTTCAAAACACG
TATTTgttaaaatgaaagtgaaacaTGGGTGTTATGGTGTATTCTAAAGG
TAcattctttttcttgtttttcagtGTGGTTTGGCCTATGATGCTTGCAC
CGGATTGACCGGAGCATTTATACACTGTTTGTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001044-exon-sc0000007-1491911889:961333..961455 | TCONS_00001044-exon-sc0000007-1491911889:961333..961455 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1510915933:961333..961455 | TCONS_00001044-exon-sc0000007-1510915933:961333..961455 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1575043694:961333..961455 | TCONS_00001044-exon-sc0000007-1575043694:961333..961455 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1491911889:961580..961614 | TCONS_00001044-exon-sc0000007-1491911889:961580..961614 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1510915933:961580..961614 | TCONS_00001044-exon-sc0000007-1510915933:961580..961614 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1575043694:961580..961614 | TCONS_00001044-exon-sc0000007-1575043694:961580..961614 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1491911889:961822..961926 | TCONS_00001044-exon-sc0000007-1491911889:961822..961926 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1510915933:961822..961926 | TCONS_00001044-exon-sc0000007-1510915933:961822..961926 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1575043694:961822..961926 | TCONS_00001044-exon-sc0000007-1575043694:961822..961926 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1491911889:969607..969670 | TCONS_00001044-exon-sc0000007-1491911889:969607..969670 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1510915933:969607..969670 | TCONS_00001044-exon-sc0000007-1510915933:969607..969670 | Clytia hemisphaerica | exon |
| TCONS_00001044-exon-sc0000007-1575043694:969607..969670 | TCONS_00001044-exon-sc0000007-1575043694:969607..969670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:961333..969670 + |
Blast
The following BLAST results are available for this feature:
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