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TCONS_00001044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001044
Unique NameTCONS_00001044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001044 ID=TCONS_00001044|Name=TCONS_00001044|organism=Clytia hemisphaerica|type=transcript|length=327bp
ATCGTCTTCATACACCGATTTTCTCTCTGgttaaattctaaaaactttat
caCAGTTCAGCAACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTT
TGTTACCCTCGTCATTTCTCAAGCTTCCACTGATGTCAATGGCTCTGGTA
ACTTGACGTGCAGCGTGAAATCAAACGAGTGTTGGTCGAAAGCGAAACAT
CTCCCAGACCGAGTCACGTGTCAAATCGGACATGCTACGTGTAGAGCCAA
GTGCAAATATGAGtGTGGTTTGGCCTATGATGCTTGCACCGGATTGACCG
GAGCATTTATACACTGTTTGTCAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000007:961333..969670+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001044 ID=TCONS_00001044|Name=TCONS_00001044|organism=Clytia hemisphaerica|type=transcript|length=8338bp|location=Sequence derived from alignment at sc0000007:961333..969670+ (Clytia hemisphaerica)
ATCGTCTTCATACACCGATTTTCTCTCTGgttaaattctaaaaactttat caCAGTTCAGCAACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTT TGTTACCCTCGTCATTTCTCAAGGTTAGGATGATATATGCTCGTTGTATG GTAGTGTTAGGGTATATCTGTTGTGTGTTCCTTTTTGGTTGAAATGGTGG ACTGTTGATGAAAATTTCGATGAGCATGTTTCATTTTCTCGTTTTAGCTT CCACTGATGTCAATGGCTCTGGTAACTTGACGGTGAGTTTTGAAGAGAAA TTGTGCTTGCAAAGTGAAACTTCCGTCGATTAATGTTGGAATGAGTAATA ATCAAATCGTTGAAGTTTATGATGATTATTACGGATATGTAGAAGAGAGT TTTCAGTTTGCTGAGCCCCCTTGAGCCGAACTCACACACTTAAACCCTTA CTTTATATCATTCATTGCTATTTTTTCTTGACACTTTAGTGCAGCGTGAA ATCAAACGAGTGTTGGTCGAAAGCGAAACATCTCCCAGACCGAGTCACGT GTCAAATCGGACATGCTACGTGTAGAGCCAAGTGCAAATATGAGGTAAAA GTTAACACATCTCTAAATACAAGATTTTTATGCGTCCATTTGACAGTCAT AACTCAAAAAAATTCGGCTTTGGGCAAATTTTCAATCGCAACCTCGCCTG GCCGGCAAATTTTTGACAAAGAACGCAATCGATACTATCTCGCACATTTT TCCAAAGTTTCAAAACACGTATTTGTTAAATTGGTACTCAAAATGAAAAG TGAAACATTTGTGTTATGGTGTGttgtgcgcagatatgtaatttttgcgc agattatgtaatttctgcgcagatatgtaatttctgcgcagatatgtaat tattttgcgcagatatgtaatttctgcgcaaatatgtaattattttgcgc aactatgtaatttcgaactgcgcagatatgtaattaaacttctgcgcaga tatgtaaaacacgatctttaaaatcaatggtacCCCCTTGATAGCTTTTA CCATTAAAACCAAACTCCGAAAGCTAATAATTATTGGTTtaggagttatg aattgtgttcttataaagttgatgtttgtgtttgtgtttatgtttgcttt gaaagaaccgatcaccgaaagctaatatctattggtttgagagttatgaa ttgtgttcttataaagttgatgtttgtgtttgtgtttatgtttgctttga aagaaccgatcaccgaaagctaatatctattggtttgagagttatgaatt gtgttcttataaagttgatgcttataagaaaaataaatatttccagCTTA AGCACCatcctatgtttgctttgaaagaaccgatcaccgaaagctaatat ctattggtttgagagttatgaattgtattcttataaagttaatgcttata agaaaaataaatttttccaagcactatcctatgtttgctttgatagaacc aaacgccgaaagccaatatcactttgataaaaagatattgacttgtttct tataaagatgatgcttataataaaaacaacaatcgcCAAATGTTTGCCTT AGTCCAAGAACAATGTTCaagatattacttcttgtatgtgaaaaattaat gttaaAATTGAGTCAGTTTTtcaatctgcgcagaaatttaattacatatc tgcgcagctcaaaattacatagttgcgcaaaataattacatatttgcgca gaaattacatatcttcGCAAAATAAtcacatatctgcgcagaaattacat atctgcgcataaTATTGTGTATTCTAAAAGTacatttattttcttgtttt tcagtGTGGTTTGGCTTATGATGCTTGCATCGAAGGATTTATACCCTGTT tctcaaaatattcaatttgtTCTAaacaatgtgaaaaataaatgatAATA AAGTTGACAAATGTAAATTATTATGTGTTCCATTTTTCTGTGTTTGGGTA GGATCAATCTTTTGCTGTGTCACGTTTTATACAACAAGGCTCAGATTCAA AATTGATGGGTGGTAGCCTTAAAAGCAGGATTCTCTTTTGCTCTCGTTTT TCGAACTTAAAATAATATCTCATCAATCATTAGGGAGGGGTTGTTTGATG CATTTATTTCAAAGGTCCGctaaataaaataagaaaatgatgtAGAAGAA GAATTTTAATTACAGCTACAGATTTAATAATATCTTCAGCTAAGCATATA TTTGCTTTCactttattacataaaagaaggAAATTTCCATTTCTCGGTAA ATTGGATTTCATAACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTC AATCAAATTTCTGGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAG GTTGGTTGATCTTGTCAGTAACCTTGATTAAAATTTTAGTTGTTTTGGGC GTACGGGGGTCGCCAACACTGAAAATACCAGAACCTCGACacagacaaca acaacaaaaattgcaaaactcATTCTTTTATCACGGCCCTTACATCTTTA ACACCGAAACATCGACAAAGAAAGACCTAATAGCGTTACACCGTCAAATT CGTACCCCACTCTCATTCGGTGTATCTTGTTCTCATCTAacattactttc actttcactctcATTTTAGATTATGCTGATGCTGCCATTCAGTCTGACAG CCTGATTGTAAGTGAGGTTTGTTTTATTTCCAAATCTAATACTCTTTATT GTCTTTCCAACGATGTATCTTGTTTTGGTTGTATAAAGACTGCCAACGAT GGAGTTACAGCCGACCCTGCTTGTTCGTACTTTCTAATAATCGAATCTTT TTATAACtcgtgtttctttttaattccttataaccttataattcTATAAT ATTTCCGTTATTCGAACATATAaggcccgggggggtactaggattgatgg gtgtcgggtatgtgcgtgccagacctctggacccttacccttagagagac tgaattttggtgaaaaggtgacccttagagagactcagtgtagaaaaacc caacccttagagagactttttcacaaaaaatttctataatggGCCAAAGA AATTATCGAATTGATAAAACAtgttcttttttttactttagtgtGACAAA GTCTTCAAGTTATGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACT GTGTCAAATCCAAGATTCCAAATGCAAAGTGAAATGTTATTATAAGGTTA GTTTACTTTATATATACAATTCCTTCCTATATTCATTCGCAATTCATACC AATCAATATTTCTCACTGATGCACAGTATGTAACAGTTTTTCAAAGCTAT TCCTCAATCATTAAAAATACCCAATTAAAATTTCCCAATTAAGATTtaga attgaaattttgaattcttatttctcttttttctttcattttagtgTGGG CTGGAGCACGACTCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTA TCACAACTGTACCAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAA TATGTTTATATAAATTTAATCTAATTTTATAATATTATCTTGGAGAAAAG ATCGATTAGTACGGAAATTAACTTTATTTGCAAcaagcttttttgttttt tatgctGATCTATAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTG TATGGAGGGCATCTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAG CTACACCAATCGGGCCTACTCTTTTTCTAGATATGGATGTAAAGGGAAAG AAAATATTGCCTGACATTTAAAAGCATTATCTTCCGTAAAAAATTTCTGC ACGTGTCTTCAGCGTCCAAAATATTCGAAGTCTGCCAATGTTCTTGATAT TGAAGTTTAAAACTAAAAATGCCCTTGACATGTTTTCTTCTCGCATATTC TTCGGATTTTTATGCAATTTCCTTTCCTGGGttttttagagtccacaaag tcttataaaaatattttgatcatcAAAGCCTTAATGTTCGTTAGTTCGTT CTAATacttaatgggataaattttcgtggGGACTAAATTTCgtggttgag ctcatccgcgaaattttaagtttttgcgGGGTCTTAAATACACGGCCCTT CACACACATTATTGGTAGATTATATTTTCATGATTTGATATGCATTATTA GCTCTTCTTTGATGCAACCataaacatataaacgactggacatcaaactt ctttgtttttttttgtataaagcgctgctagcttcgttgccgcctcgtta aaaacctaaaatgaaacaataaattttgatgatatacctcttTGAAATAC CTTGCTAATAACGTCAAAACCttgacaaaagtctctgttgttctactttt ctcaagtcttttatctacatcataacaaagataacagaggcaaaatcatc gtcagcttgtcaaaactccaactaaaatttctaaatttaaaaacaaaaaa aatcagagaatatacaacatgctccatctcaccaacacaagaaaaatggt ttctttttttgtttcatgtgaaaaaagtgagggaaatacccaaaagacac gctgggGATACGTATCCCCAAGCCTTAtgggattcaaattatgatgTTCT TATGACGCAGACTCTAAACTTTGGCAAACTacttttttcaagtcaaaaaa attattggagtgacaaaagtgattcacACCATAAATTCACACGCAgatga aattctgcatttcagagatGAAAGTGCTGCTAaaatcatagtccgtataa aaaatcCTGGTCTGGAAGTTtattgttttgactttttgttagctttttcc tctGTTAATAGtgaagttaagtaaatcggtaaaacgacgacgaacgaaaa tttaacaggctagtgagtttcaaccaatcaaattttgtattttcactagc ctattacatttttcgtccgtcgtcgtgattatcctggtatgcttaagGCT ATgcttttttcgcgttggtgccaAAACTCgagaatattgtcggatttttc atgccaattttgaaatacatgcGACAACGAAGCTCgtttcaaagagacaa taaaagataatCTCctgtcgtttatatgttcatgatgcaacttaatattt caaaagtagTTATTTAAtaagtttttgagttttgttcaaAATCATTCCAA ATAAAATGCGCGAattttaatccccgcaaaagtttatcccattaaagtaa acaGAACGTGTAGTGGGCTATCTCCAAAATAaagatttcttgattttcaa caTTAGCGTAAGGGGATAAACTCTGGATTCGTGGACACTAATTCCCAAAC AAACGCGCTAATAAGCCAAAGGAAATGAATACTTAATGTGGGGTGAAAGT CCTACGatcaaatttcctttctttttaagaACTGGTGGCgtattttaatt aaaatttgattAATTTCAGTTAAAATTAGTCCGTTATAGTTATATGACAC CCAATTTATTTATCTAGATGGTGTTTCCTTTTCacattttaaacattgaa tgtTGAGAAATGTTGACGATTTTATTGCAAATTCTTTTGTTCgaaatgat gatgatgatgatgtttaaTCAGTATCACAGCTGTTTAAATTCATGAAATC cgatttttggtgttttatgACAAAAACAAGGTAATAAAAAAGGGAACAGT TTTTTGTCTCATTCTTTACTTTCTCCACACAACCAACAACACCATGAAGT CATTCACTATTTTCGCTTTCTTGGCTTTTGTAGCCTTTGCTTCCGCTGAC TTCGCTTTCGAAGGTAAGATTCAGTCAAAACACGCGCGATGGTGTTTTTC ACAAACTAAACCTTCAAGTCCAGATGACATACGAGGGCCACCAACGCTCA AATAGACCGACATTATTTCATTCGAGCACCACAACACTAACAGAATATAA GGGGCTTACACCGAAACACTTTCAGACCTGAAGCACCCCCTTTTCACttc aaatgttttattttaactttcgcaaatttaattTTAGATATGTATGATGG TGGATCAGGTGATGTCAGTGTAAGTCAGCTCTTCATAATTAAgcggaatt aattttggcgaacgttccctttttgttcaatattttagctggAAAAAGag taaattgaaagaaaattaaatttagcgagaacttattttggcgaatgacc tatAAATNAGGGGCTTGTACCGAAACACTTTCAGACCTGAAGCATCGCCC CCAGTTTACGTCACCTTATTAGAGAAGTTAACTGAGGAAAATGCGCAAAT AATATTTTGGATCTTCTTTGTAGAACTTTTCACTTCAAGagcccccagcg gaccctcaattcacgcaatcacacaATTTTTCCTCGAGTTTTACGCAATA ACCCAATATTGGTGAAGAATACAACATGGGAACATGAATGGTGTAATAAA TTATCATGGTAATGTGATGACGTATTCCTTATTTCCTGTCTTGAAAATAG TAAATAAGAAAAATTGAGCCAAATACAGTAAAAGTAATATCTGGTAATAT CGATTAATTAAAAAACTGTTACTAATGGTATCATTTCCTTTTATAGATAT TATTACCTCAATTTTCGTTTGGAGTTTAgattaaaattcataaaatttaa tCAGTTTGCCAGCTGTCAACCTCGTACCCAGGGCGATAAGCTTTCTGATA TTAGATAGGACGCTTAGACGTAACAGTGAGCTTCCTATTTGCCTCTCATC TAGACTAGCAACTATATTTTCCCGCGCGGCCGCTGACTGTTCGCCATGGA ATCGAGGTTGGCCAGCTGTATCTATGTTTGAATGTTTTATGAAATGAAcc cggggggcactcgatctgaaaacgaccatacgttcggcccaaaatttggc ttctaaaatcggacccttacagtgcagtgaatttccatgaaaaatcatac ccttacagtgcactttttcaaaatttctcgcccgtaagggcgaatttttg cacttttccaagaaaatgtggaatttttcctccaaaattgaccaattttg tgccaatttaccaaaaaattggccttttatcacaatttcctacccttaca gtgcagatcagtgcagttttgtaatttcctacccttacagtgcagatcag tgcagttttgtaatttcctacccttacagtgcagatcagtgcagttttgt aatttcctacccttacagtgcagatcagtgcagttttgtaatttcctacc cttacagtgcagatcagtgcagttttgtaatttcctacccttacagtgca ctagctgaactatgaaaaaacctacccttaagggccgatcGGCTGGTAGG TCATTTTCCTtgagggcccccccccccctccccggggaaatgaatcatta aaaataaacataaaacaGCAATAAATCGTCTTCAAACACAAACATTTTCT CTCTGGtgaaattctaaaaactttatcaCAGTTCAGCAACCATGTATTCG TTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGTCATTTCTCAGGT TAGGATGATATATGCTCGTTGTATGTTAGTGTATACAGATACTTATTGTG CGTTTCTTTTTGGTTGTGGTAGTTGAAAAGCTGGACTGAAATTTCGATGA GCATGTTTCATTTTCTCGTTTTAGATTCCACTGATTCCAATGGCTCTGGT AACTTAACGGTGAGTTTTGAAGAGAAATTCTCCTTGCAAAGTGAAACTTC CGTCGATTAATGTTGGAATGACTAATAATCAAAATCGTTGAAGTTTGTGA TGATTATTACGGATATGTAGAAGAGAGTTTTCAGTTCGTTGAGCCCCCCT GAGCCGAACTTACACACTTAAACCCTTACTTTATATCATTCATTGCTATT TTTTCTTGACACTTATTAGTGCAGCGAGAAATCAAACGAGTGTTGGTCGA AAGCGAAACATCTTGCAGACCGAGTCACGTGTCAAATCGGACATGCCAAG TGTAAAGCCAAGTGCAAATATGAGGTAAATGTTAACAGCTCTCTAAATAC AAGATTTTTATGAGTCCATTTGACAGTCATAACTCAAAAAAAGTTCGAct ttggtcaaattttcaattgcAACATCGCCTGGCCGGCAAATTTTTGACCA AGAACGCAATCGATACTATCTCGCACCTTTTTCCAAAGTTTCAAAACACG TATTTgttaaaatgaaagtgaaacaTGGGTGTTATGGTGTATTCTAAAGG TAcattctttttcttgtttttcagtGTGGTTTGGCCTATGATGCTTGCAC CGGATTGACCGGAGCATTTATACACTGTTTGTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000593XLOC_000593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001044-exon-sc0000007-1491911889:961333..961455TCONS_00001044-exon-sc0000007-1491911889:961333..961455Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1510915933:961333..961455TCONS_00001044-exon-sc0000007-1510915933:961333..961455Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1575043694:961333..961455TCONS_00001044-exon-sc0000007-1575043694:961333..961455Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1491911889:961580..961614TCONS_00001044-exon-sc0000007-1491911889:961580..961614Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1510915933:961580..961614TCONS_00001044-exon-sc0000007-1510915933:961580..961614Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1575043694:961580..961614TCONS_00001044-exon-sc0000007-1575043694:961580..961614Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1491911889:961822..961926TCONS_00001044-exon-sc0000007-1491911889:961822..961926Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1510915933:961822..961926TCONS_00001044-exon-sc0000007-1510915933:961822..961926Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1575043694:961822..961926TCONS_00001044-exon-sc0000007-1575043694:961822..961926Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1491911889:969607..969670TCONS_00001044-exon-sc0000007-1491911889:969607..969670Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1510915933:969607..969670TCONS_00001044-exon-sc0000007-1510915933:969607..969670Clytia hemisphaericaexon
TCONS_00001044-exon-sc0000007-1575043694:969607..969670TCONS_00001044-exon-sc0000007-1575043694:969607..969670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:961333..969670 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.848649 1.40867 0.602154 0 0 0.640762 1.70935 0.111018 11.0578 6.4438 15.3615 10.3359 17.8291 25.0927 8.37204 17.4592 2.68596 2.51969 70.0026 56.7187 80.4221 72.9895 73.7268 116.109 93.8802 107.388 0.644636 0.0333173 1.23563 1.26783
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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