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TCONS_00001043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001043
Unique NameTCONS_00001043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001043 ID=TCONS_00001043|Name=TCONS_00001043|organism=Clytia hemisphaerica|type=transcript|length=465bp
CTTTTGTAGATATTGATACCTCAATTTTCGTTTGGAGTTTAGATTAAAAT
CCATAAGATTTAATCAGTTTGCCAGCTGTATCTATgtttaaatttgattt
gaaatgaatcattgaaaataaacataaaacaGCAATAAATCGTCTTCATA
CACCGATTTTCTCTCTGgttaaattctaaaaactttatcaCAGTTCAGCA
ACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGT
CATTTCTCAAGATTCCACTGATTCCAATGGCTCTGGTAACTTAACGTGCA
GCGAGAAATCAAACGAGTGTTGGTCGAAAGCGAAACATCTTGCAGACCGA
GTCACGTGTCAAATCGGACATGCCAAGTGTAAAGCCAAGTGCAAATATGA
GtGTGGTTTGGCCTATGATGCTTGCACCGGATTGACCGGAGCATTTATAC
ACTGTTTGTCAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000007:961195..969670+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001043 ID=TCONS_00001043|Name=TCONS_00001043|organism=Clytia hemisphaerica|type=transcript|length=8476bp|location=Sequence derived from alignment at sc0000007:961195..969670+ (Clytia hemisphaerica)
CTTTTGTAGATATTGATACCTCAATTTTCGTTTGGAGTTTAGATTAAAAT CCATAAGATTTAATCAGTTTGCCAGCTGTATCTATgtttaaatttgattt gaaatgaatcattgaaaataaacataaaacaGCAATAAATCGTCTTCATA CACCGATTTTCTCTCTGgttaaattctaaaaactttatcaCAGTTCAGCA ACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGT CATTTCTCAAGGTTAGGATGATATATGCTCGTTGTATGGTAGTGTTAGGG TATATCTGTTGTGTGTTCCTTTTTGGTTGAAATGGTGGACTGTTGATGAA AATTTCGATGAGCATGTTTCATTTTCTCGTTTTAGCTTCCACTGATGTCA ATGGCTCTGGTAACTTGACGGTGAGTTTTGAAGAGAAATTGTGCTTGCAA AGTGAAACTTCCGTCGATTAATGTTGGAATGAGTAATAATCAAATCGTTG AAGTTTATGATGATTATTACGGATATGTAGAAGAGAGTTTTCAGTTTGCT GAGCCCCCTTGAGCCGAACTCACACACTTAAACCCTTACTTTATATCATT CATTGCTATTTTTTCTTGACACTTTAGTGCAGCGTGAAATCAAACGAGTG TTGGTCGAAAGCGAAACATCTCCCAGACCGAGTCACGTGTCAAATCGGAC ATGCTACGTGTAGAGCCAAGTGCAAATATGAGGTAAAAGTTAACACATCT CTAAATACAAGATTTTTATGCGTCCATTTGACAGTCATAACTCAAAAAAA TTCGGCTTTGGGCAAATTTTCAATCGCAACCTCGCCTGGCCGGCAAATTT TTGACAAAGAACGCAATCGATACTATCTCGCACATTTTTCCAAAGTTTCA AAACACGTATTTGTTAAATTGGTACTCAAAATGAAAAGTGAAACATTTGT GTTATGGTGTGttgtgcgcagatatgtaatttttgcgcagattatgtaat ttctgcgcagatatgtaatttctgcgcagatatgtaattattttgcgcag atatgtaatttctgcgcaaatatgtaattattttgcgcaactatgtaatt tcgaactgcgcagatatgtaattaaacttctgcgcagatatgtaaaacac gatctttaaaatcaatggtacCCCCTTGATAGCTTTTACCATTAAAACCA AACTCCGAAAGCTAATAATTATTGGTTtaggagttatgaattgtgttctt ataaagttgatgtttgtgtttgtgtttatgtttgctttgaaagaaccgat caccgaaagctaatatctattggtttgagagttatgaattgtgttcttat aaagttgatgtttgtgtttgtgtttatgtttgctttgaaagaaccgatca ccgaaagctaatatctattggtttgagagttatgaattgtgttcttataa agttgatgcttataagaaaaataaatatttccagCTTAAGCACCatccta tgtttgctttgaaagaaccgatcaccgaaagctaatatctattggtttga gagttatgaattgtattcttataaagttaatgcttataagaaaaataaat ttttccaagcactatcctatgtttgctttgatagaaccaaacgccgaaag ccaatatcactttgataaaaagatattgacttgtttcttataaagatgat gcttataataaaaacaacaatcgcCAAATGTTTGCCTTAGTCCAAGAACA ATGTTCaagatattacttcttgtatgtgaaaaattaatgttaaAATTGAG TCAGTTTTtcaatctgcgcagaaatttaattacatatctgcgcagctcaa aattacatagttgcgcaaaataattacatatttgcgcagaaattacatat cttcGCAAAATAAtcacatatctgcgcagaaattacatatctgcgcataa TATTGTGTATTCTAAAAGTacatttattttcttgtttttcagtGTGGTTT GGCTTATGATGCTTGCATCGAAGGATTTATACCCTGTTtctcaaaatatt caatttgtTCTAaacaatgtgaaaaataaatgatAATAAAGTTGACAAAT GTAAATTATTATGTGTTCCATTTTTCTGTGTTTGGGTAGGATCAATCTTT TGCTGTGTCACGTTTTATACAACAAGGCTCAGATTCAAAATTGATGGGTG GTAGCCTTAAAAGCAGGATTCTCTTTTGCTCTCGTTTTTCGAACTTAAAA TAATATCTCATCAATCATTAGGGAGGGGTTGTTTGATGCATTTATTTCAA AGGTCCGctaaataaaataagaaaatgatgtAGAAGAAGAATTTTAATTA CAGCTACAGATTTAATAATATCTTCAGCTAAGCATATATTTGCTTTCact ttattacataaaagaaggAAATTTCCATTTCTCGGTAAATTGGATTTCAT AACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAATCAAATTTCT GGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGGTTGGTTGATCT TGTCAGTAACCTTGATTAAAATTTTAGTTGTTTTGGGCGTACGGGGGTCG CCAACACTGAAAATACCAGAACCTCGACacagacaacaacaacaaaaatt gcaaaactcATTCTTTTATCACGGCCCTTACATCTTTAACACCGAAACAT CGACAAAGAAAGACCTAATAGCGTTACACCGTCAAATTCGTACCCCACTC TCATTCGGTGTATCTTGTTCTCATCTAacattactttcactttcactctc ATTTTAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTGTAAG TGAGGTTTGTTTTATTTCCAAATCTAATACTCTTTATTGTCTTTCCAACG ATGTATCTTGTTTTGGTTGTATAAAGACTGCCAACGATGGAGTTACAGCC GACCCTGCTTGTTCGTACTTTCTAATAATCGAATCTTTTTATAACtcgtg tttctttttaattccttataaccttataattcTATAATATTTCCGTTATT CGAACATATAaggcccgggggggtactaggattgatgggtgtcgggtatg tgcgtgccagacctctggacccttacccttagagagactgaattttggtg aaaaggtgacccttagagagactcagtgtagaaaaacccaacccttagag agactttttcacaaaaaatttctataatggGCCAAAGAAATTATCGAATT GATAAAACAtgttcttttttttactttagtgtGACAAAGTCTTCAAGTTA TGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACTGTGTCAAATCCA AGATTCCAAATGCAAAGTGAAATGTTATTATAAGGTTAGTTTACTTTATA TATACAATTCCTTCCTATATTCATTCGCAATTCATACCAATCAATATTTC TCACTGATGCACAGTATGTAACAGTTTTTCAAAGCTATTCCTCAATCATT AAAAATACCCAATTAAAATTTCCCAATTAAGATTtagaattgaaattttg aattcttatttctcttttttctttcattttagtgTGGGCTGGAGCACGAC TCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTATCACAACTGTAC CAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAATATGTTTATATA AATTTAATCTAATTTTATAATATTATCTTGGAGAAAAGATCGATTAGTAC GGAAATTAACTTTATTTGCAAcaagcttttttgttttttatgctGATCTA TAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTGTATGGAGGGCAT CTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAGCTACACCAATCG GGCCTACTCTTTTTCTAGATATGGATGTAAAGGGAAAGAAAATATTGCCT GACATTTAAAAGCATTATCTTCCGTAAAAAATTTCTGCACGTGTCTTCAG CGTCCAAAATATTCGAAGTCTGCCAATGTTCTTGATATTGAAGTTTAAAA CTAAAAATGCCCTTGACATGTTTTCTTCTCGCATATTCTTCGGATTTTTA TGCAATTTCCTTTCCTGGGttttttagagtccacaaagtcttataaaaat attttgatcatcAAAGCCTTAATGTTCGTTAGTTCGTTCTAATacttaat gggataaattttcgtggGGACTAAATTTCgtggttgagctcatccgcgaa attttaagtttttgcgGGGTCTTAAATACACGGCCCTTCACACACATTAT TGGTAGATTATATTTTCATGATTTGATATGCATTATTAGCTCTTCTTTGA TGCAACCataaacatataaacgactggacatcaaacttctttgttttttt ttgtataaagcgctgctagcttcgttgccgcctcgttaaaaacctaaaat gaaacaataaattttgatgatatacctcttTGAAATACCTTGCTAATAAC GTCAAAACCttgacaaaagtctctgttgttctacttttctcaagtctttt atctacatcataacaaagataacagaggcaaaatcatcgtcagcttgtca aaactccaactaaaatttctaaatttaaaaacaaaaaaaatcagagaata tacaacatgctccatctcaccaacacaagaaaaatggtttctttttttgt ttcatgtgaaaaaagtgagggaaatacccaaaagacacgctgggGATACG TATCCCCAAGCCTTAtgggattcaaattatgatgTTCTTATGACGCAGAC TCTAAACTTTGGCAAACTacttttttcaagtcaaaaaaattattggagtg acaaaagtgattcacACCATAAATTCACACGCAgatgaaattctgcattt cagagatGAAAGTGCTGCTAaaatcatagtccgtataaaaaatcCTGGTC TGGAAGTTtattgttttgactttttgttagctttttcctctGTTAATAGt gaagttaagtaaatcggtaaaacgacgacgaacgaaaatttaacaggcta gtgagtttcaaccaatcaaattttgtattttcactagcctattacatttt tcgtccgtcgtcgtgattatcctggtatgcttaagGCTATgcttttttcg cgttggtgccaAAACTCgagaatattgtcggatttttcatgccaattttg aaatacatgcGACAACGAAGCTCgtttcaaagagacaataaaagataatC TCctgtcgtttatatgttcatgatgcaacttaatatttcaaaagtagTTA TTTAAtaagtttttgagttttgttcaaAATCATTCCAAATAAAATGCGCG AattttaatccccgcaaaagtttatcccattaaagtaaacaGAACGTGTA GTGGGCTATCTCCAAAATAaagatttcttgattttcaacaTTAGCGTAAG GGGATAAACTCTGGATTCGTGGACACTAATTCCCAAACAAACGCGCTAAT AAGCCAAAGGAAATGAATACTTAATGTGGGGTGAAAGTCCTACGatcaaa tttcctttctttttaagaACTGGTGGCgtattttaattaaaatttgattA ATTTCAGTTAAAATTAGTCCGTTATAGTTATATGACACCCAATTTATTTA TCTAGATGGTGTTTCCTTTTCacattttaaacattgaatgtTGAGAAATG TTGACGATTTTATTGCAAATTCTTTTGTTCgaaatgatgatgatgatgat gtttaaTCAGTATCACAGCTGTTTAAATTCATGAAATCcgatttttggtg ttttatgACAAAAACAAGGTAATAAAAAAGGGAACAGTTTTTTGTCTCAT TCTTTACTTTCTCCACACAACCAACAACACCATGAAGTCATTCACTATTT TCGCTTTCTTGGCTTTTGTAGCCTTTGCTTCCGCTGACTTCGCTTTCGAA GGTAAGATTCAGTCAAAACACGCGCGATGGTGTTTTTCACAAACTAAACC TTCAAGTCCAGATGACATACGAGGGCCACCAACGCTCAAATAGACCGACA TTATTTCATTCGAGCACCACAACACTAACAGAATATAAGGGGCTTACACC GAAACACTTTCAGACCTGAAGCACCCCCTTTTCACttcaaatgttttatt ttaactttcgcaaatttaattTTAGATATGTATGATGGTGGATCAGGTGA TGTCAGTGTAAGTCAGCTCTTCATAATTAAgcggaattaattttggcgaa cgttccctttttgttcaatattttagctggAAAAAGagtaaattgaaaga aaattaaatttagcgagaacttattttggcgaatgacctatAAATNAGGG GCTTGTACCGAAACACTTTCAGACCTGAAGCATCGCCCCCAGTTTACGTC ACCTTATTAGAGAAGTTAACTGAGGAAAATGCGCAAATAATATTTTGGAT CTTCTTTGTAGAACTTTTCACTTCAAGagcccccagcggaccctcaattc acgcaatcacacaATTTTTCCTCGAGTTTTACGCAATAACCCAATATTGG TGAAGAATACAACATGGGAACATGAATGGTGTAATAAATTATCATGGTAA TGTGATGACGTATTCCTTATTTCCTGTCTTGAAAATAGTAAATAAGAAAA ATTGAGCCAAATACAGTAAAAGTAATATCTGGTAATATCGATTAATTAAA AAACTGTTACTAATGGTATCATTTCCTTTTATAGATATTATTACCTCAAT TTTCGTTTGGAGTTTAgattaaaattcataaaatttaatCAGTTTGCCAG CTGTCAACCTCGTACCCAGGGCGATAAGCTTTCTGATATTAGATAGGACG CTTAGACGTAACAGTGAGCTTCCTATTTGCCTCTCATCTAGACTAGCAAC TATATTTTCCCGCGCGGCCGCTGACTGTTCGCCATGGAATCGAGGTTGGC CAGCTGTATCTATGTTTGAATGTTTTATGAAATGAAcccggggggcactc gatctgaaaacgaccatacgttcggcccaaaatttggcttctaaaatcgg acccttacagtgcagtgaatttccatgaaaaatcatacccttacagtgca ctttttcaaaatttctcgcccgtaagggcgaatttttgcacttttccaag aaaatgtggaatttttcctccaaaattgaccaattttgtgccaatttacc aaaaaattggccttttatcacaatttcctacccttacagtgcagatcagt gcagttttgtaatttcctacccttacagtgcagatcagtgcagttttgta atttcctacccttacagtgcagatcagtgcagttttgtaatttcctaccc ttacagtgcagatcagtgcagttttgtaatttcctacccttacagtgcag atcagtgcagttttgtaatttcctacccttacagtgcactagctgaacta tgaaaaaacctacccttaagggccgatcGGCTGGTAGGTCATTTTCCTtg agggcccccccccccctccccggggaaatgaatcattaaaaataaacata aaacaGCAATAAATCGTCTTCAAACACAAACATTTTCTCTCTGGtgaaat tctaaaaactttatcaCAGTTCAGCAACCATGTATTCGTTGAAAGTCTGC ATCTTTTTGGCTTTTGTTACCCTCGTCATTTCTCAGGTTAGGATGATATA TGCTCGTTGTATGTTAGTGTATACAGATACTTATTGTGCGTTTCTTTTTG GTTGTGGTAGTTGAAAAGCTGGACTGAAATTTCGATGAGCATGTTTCATT TTCTCGTTTTAGATTCCACTGATTCCAATGGCTCTGGTAACTTAACGGTG AGTTTTGAAGAGAAATTCTCCTTGCAAAGTGAAACTTCCGTCGATTAATG TTGGAATGACTAATAATCAAAATCGTTGAAGTTTGTGATGATTATTACGG ATATGTAGAAGAGAGTTTTCAGTTCGTTGAGCCCCCCTGAGCCGAACTTA CACACTTAAACCCTTACTTTATATCATTCATTGCTATTTTTTCTTGACAC TTATTAGTGCAGCGAGAAATCAAACGAGTGTTGGTCGAAAGCGAAACATC TTGCAGACCGAGTCACGTGTCAAATCGGACATGCCAAGTGTAAAGCCAAG TGCAAATATGAGGTAAATGTTAACAGCTCTCTAAATACAAGATTTTTATG AGTCCATTTGACAGTCATAACTCAAAAAAAGTTCGActttggtcaaattt tcaattgcAACATCGCCTGGCCGGCAAATTTTTGACCAAGAACGCAATCG ATACTATCTCGCACCTTTTTCCAAAGTTTCAAAACACGTATTTgttaaaa tgaaagtgaaacaTGGGTGTTATGGTGTATTCTAAAGGTAcattcttttt cttgtttttcagtGTGGTTTGGCCTATGATGCTTGCACCGGATTGACCGG AGCATTTATACACTGTTTGTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000593XLOC_000593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001043-exon-sc0000007-1491911889:961195..961455TCONS_00001043-exon-sc0000007-1491911889:961195..961455Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1510915933:961195..961455TCONS_00001043-exon-sc0000007-1510915933:961195..961455Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1575043694:961195..961455TCONS_00001043-exon-sc0000007-1575043694:961195..961455Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1491911889:969007..969041TCONS_00001043-exon-sc0000007-1491911889:969007..969041Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1510915933:969007..969041TCONS_00001043-exon-sc0000007-1510915933:969007..969041Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1575043694:969007..969041TCONS_00001043-exon-sc0000007-1575043694:969007..969041Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1491911889:969252..969356TCONS_00001043-exon-sc0000007-1491911889:969252..969356Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1510915933:969252..969356TCONS_00001043-exon-sc0000007-1510915933:969252..969356Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1575043694:969252..969356TCONS_00001043-exon-sc0000007-1575043694:969252..969356Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1491911889:969607..969670TCONS_00001043-exon-sc0000007-1491911889:969607..969670Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1510915933:969607..969670TCONS_00001043-exon-sc0000007-1510915933:969607..969670Clytia hemisphaericaexon
TCONS_00001043-exon-sc0000007-1575043694:969607..969670TCONS_00001043-exon-sc0000007-1575043694:969607..969670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:961195..969670 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.662753 0 2.0221 0.413577 0.333399 0 0 0 0 0.128627 0 0.551618 1.39222 2.12075 1.24989 2.90737 54.763 60.555 0.265367 0 0.272735 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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