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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001042 ID=TCONS_00001042|Name=TCONS_00001042|organism=Clytia hemisphaerica|type=transcript|length=1411bp CTTTTGTAGATATTGATACCTCAATTTTCGTTTGGAGTTTAGATTAAAAT CCATAAGATTTAATCAGTTTGCCAGCTGTATCTATgtttaaatttgattt gaaatgaatcattgaaaataaacataaaacaGCAATAAATCGTCTTCATA CACCGATTTTCTCTCTGgttaaattctaaaaactttatcaCAGTTCAGCA ACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGT CATTTCTCAAGCTTCCACTGATGTCAATGGCTCTGGTAACTTGACGTGCA GCGTGAAATCAAACGAGTGTTGGTCGAAAGCGAAACATCTCCCAGACCGA GTCACGTGTCAAATCGGACATGCTACGTGTAGAGCCAAGTGCAAATATGA GtGTGGTTTGGCTTATGATGCTTGCATCGAAGGATTTATACCCTGTTtct caaaatattcaatttgtTCTAaacaatgtgaaaaataaatgatAATAAAG TTGACAAATGTAAATTATTATGTGTTCCATTTTTCTGTGTTTGGGTAGGA TCAATCTTTTGCTGTGTCACGTTTTATACAACAAGGCTCAGATTCAAAAT TGATGGGTGGTAGCCTTAAAAGCAGGATTCTCTTTTGCTCTCGTTTTTCG AACTTAAAATAATATCTCATCAATCATTAGGGAGGGGTTGTTTGATGCAT TTATTTCAAAGGTCCGctaaataaaataagaaaatgatgtAGAAGAAGAA TTTTAATTACAGCTACAGATTTAATAATATCTTCAGCTAAGCATATATTT GCTTTCactttattacataaaagaaggAAATTTCCATTTCTCGGTAAATT GGATTTCATAACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAAT CAAATTTCTGGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGATT ATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTtgtGACAAAGTCTTC AAGTTATGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACTGTGTCA AATCCAAGATTCCAAATGCAAAGTGAAATGTTATTATAAGtgTGGGCTGG AGCACGACTCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTATCAC AACTGTACCAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAATATG TTTATATAAATTTAATCTAATTTTATAATATTATCTTGGAGAAAAGATCG ATTAGTACGGAAATTAACTTTATTTGCAAcaagcttttttgttttttatg ctGATCTATAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTGTATG GAGGGCATCTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAGCTAC ACCAATCGGGC Run BLAST on NCBI protein sequence of TCONS_00001042-protein >TCONS_00001042-protein ID=TCONS_00001042-protein|Name=TCONS_00001042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MASIKFLVFLTFLVLTTSKDYADAAIQSDSLICDKVFKLCWTQAKMGTDK VLCQIQDSKCKVKCYYKCGLEHDSCTGSTFFCFAKYHNCTSKCGKINGIL S Run BLAST on NCBI transcript from alignment at sc0000007:961195..965097+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001042 ID=TCONS_00001042|Name=TCONS_00001042|organism=Clytia hemisphaerica|type=transcript|length=3903bp|location=Sequence derived from alignment at sc0000007:961195..965097+ (Clytia hemisphaerica) CTTTTGTAGATATTGATACCTCAATTTTCGTTTGGAGTTTAGATTAAAAT
CCATAAGATTTAATCAGTTTGCCAGCTGTATCTATgtttaaatttgattt
gaaatgaatcattgaaaataaacataaaacaGCAATAAATCGTCTTCATA
CACCGATTTTCTCTCTGgttaaattctaaaaactttatcaCAGTTCAGCA
ACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGT
CATTTCTCAAGGTTAGGATGATATATGCTCGTTGTATGGTAGTGTTAGGG
TATATCTGTTGTGTGTTCCTTTTTGGTTGAAATGGTGGACTGTTGATGAA
AATTTCGATGAGCATGTTTCATTTTCTCGTTTTAGCTTCCACTGATGTCA
ATGGCTCTGGTAACTTGACGGTGAGTTTTGAAGAGAAATTGTGCTTGCAA
AGTGAAACTTCCGTCGATTAATGTTGGAATGAGTAATAATCAAATCGTTG
AAGTTTATGATGATTATTACGGATATGTAGAAGAGAGTTTTCAGTTTGCT
GAGCCCCCTTGAGCCGAACTCACACACTTAAACCCTTACTTTATATCATT
CATTGCTATTTTTTCTTGACACTTTAGTGCAGCGTGAAATCAAACGAGTG
TTGGTCGAAAGCGAAACATCTCCCAGACCGAGTCACGTGTCAAATCGGAC
ATGCTACGTGTAGAGCCAAGTGCAAATATGAGGTAAAAGTTAACACATCT
CTAAATACAAGATTTTTATGCGTCCATTTGACAGTCATAACTCAAAAAAA
TTCGGCTTTGGGCAAATTTTCAATCGCAACCTCGCCTGGCCGGCAAATTT
TTGACAAAGAACGCAATCGATACTATCTCGCACATTTTTCCAAAGTTTCA
AAACACGTATTTGTTAAATTGGTACTCAAAATGAAAAGTGAAACATTTGT
GTTATGGTGTGttgtgcgcagatatgtaatttttgcgcagattatgtaat
ttctgcgcagatatgtaatttctgcgcagatatgtaattattttgcgcag
atatgtaatttctgcgcaaatatgtaattattttgcgcaactatgtaatt
tcgaactgcgcagatatgtaattaaacttctgcgcagatatgtaaaacac
gatctttaaaatcaatggtacCCCCTTGATAGCTTTTACCATTAAAACCA
AACTCCGAAAGCTAATAATTATTGGTTtaggagttatgaattgtgttctt
ataaagttgatgtttgtgtttgtgtttatgtttgctttgaaagaaccgat
caccgaaagctaatatctattggtttgagagttatgaattgtgttcttat
aaagttgatgtttgtgtttgtgtttatgtttgctttgaaagaaccgatca
ccgaaagctaatatctattggtttgagagttatgaattgtgttcttataa
agttgatgcttataagaaaaataaatatttccagCTTAAGCACCatccta
tgtttgctttgaaagaaccgatcaccgaaagctaatatctattggtttga
gagttatgaattgtattcttataaagttaatgcttataagaaaaataaat
ttttccaagcactatcctatgtttgctttgatagaaccaaacgccgaaag
ccaatatcactttgataaaaagatattgacttgtttcttataaagatgat
gcttataataaaaacaacaatcgcCAAATGTTTGCCTTAGTCCAAGAACA
ATGTTCaagatattacttcttgtatgtgaaaaattaatgttaaAATTGAG
TCAGTTTTtcaatctgcgcagaaatttaattacatatctgcgcagctcaa
aattacatagttgcgcaaaataattacatatttgcgcagaaattacatat
cttcGCAAAATAAtcacatatctgcgcagaaattacatatctgcgcataa
TATTGTGTATTCTAAAAGTacatttattttcttgtttttcagtGTGGTTT
GGCTTATGATGCTTGCATCGAAGGATTTATACCCTGTTtctcaaaatatt
caatttgtTCTAaacaatgtgaaaaataaatgatAATAAAGTTGACAAAT
GTAAATTATTATGTGTTCCATTTTTCTGTGTTTGGGTAGGATCAATCTTT
TGCTGTGTCACGTTTTATACAACAAGGCTCAGATTCAAAATTGATGGGTG
GTAGCCTTAAAAGCAGGATTCTCTTTTGCTCTCGTTTTTCGAACTTAAAA
TAATATCTCATCAATCATTAGGGAGGGGTTGTTTGATGCATTTATTTCAA
AGGTCCGctaaataaaataagaaaatgatgtAGAAGAAGAATTTTAATTA
CAGCTACAGATTTAATAATATCTTCAGCTAAGCATATATTTGCTTTCact
ttattacataaaagaaggAAATTTCCATTTCTCGGTAAATTGGATTTCAT
AACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAATCAAATTTCT
GGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGGTTGGTTGATCT
TGTCAGTAACCTTGATTAAAATTTTAGTTGTTTTGGGCGTACGGGGGTCG
CCAACACTGAAAATACCAGAACCTCGACacagacaacaacaacaaaaatt
gcaaaactcATTCTTTTATCACGGCCCTTACATCTTTAACACCGAAACAT
CGACAAAGAAAGACCTAATAGCGTTACACCGTCAAATTCGTACCCCACTC
TCATTCGGTGTATCTTGTTCTCATCTAacattactttcactttcactctc
ATTTTAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTGTAAG
TGAGGTTTGTTTTATTTCCAAATCTAATACTCTTTATTGTCTTTCCAACG
ATGTATCTTGTTTTGGTTGTATAAAGACTGCCAACGATGGAGTTACAGCC
GACCCTGCTTGTTCGTACTTTCTAATAATCGAATCTTTTTATAACtcgtg
tttctttttaattccttataaccttataattcTATAATATTTCCGTTATT
CGAACATATAaggcccgggggggtactaggattgatgggtgtcgggtatg
tgcgtgccagacctctggacccttacccttagagagactgaattttggtg
aaaaggtgacccttagagagactcagtgtagaaaaacccaacccttagag
agactttttcacaaaaaatttctataatggGCCAAAGAAATTATCGAATT
GATAAAACAtgttcttttttttactttagtgtGACAAAGTCTTCAAGTTA
TGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACTGTGTCAAATCCA
AGATTCCAAATGCAAAGTGAAATGTTATTATAAGGTTAGTTTACTTTATA
TATACAATTCCTTCCTATATTCATTCGCAATTCATACCAATCAATATTTC
TCACTGATGCACAGTATGTAACAGTTTTTCAAAGCTATTCCTCAATCATT
AAAAATACCCAATTAAAATTTCCCAATTAAGATTtagaattgaaattttg
aattcttatttctcttttttctttcattttagtgTGGGCTGGAGCACGAC
TCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTATCACAACTGTAC
CAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAATATGTTTATATA
AATTTAATCTAATTTTATAATATTATCTTGGAGAAAAGATCGATTAGTAC
GGAAATTAACTTTATTTGCAAcaagcttttttgttttttatgctGATCTA
TAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTGTATGGAGGGCAT
CTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAGCTACACCAATCG
GGC Coding sequence (CDS) from alignment at sc0000007:961195..965097+ >TCONS_00001042 ID=TCONS_00001042|Name=TCONS_00001042|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000007:961195..965097+ (Clytia hemisphaerica) ATGGCTTCAATCAAATTTCTGGTCTTCTTAACTTTCCTCGTGCTCACAAC TTCAAAAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTtgtG ACAAAGTCTTCAAGTTATGCTGGACACAGGCGAAGATGGGTACTGATAAA GTACTGTGTCAAATCCAAGATTCCAAATGCAAAGTGAAATGTTATTATAA GtgTGGGCTGGAGCACGACTCGTGCACTGGGAGTACTTTCTTCTGCTTTG CAAAGTATCACAACTGTACCAGCAAATGTGGAAAAATTAATGGTATCTTG TCGTGAATGGCTTCAATCAAATTTCTGGTCTTCTTAACTTTCCTCGTGCT CACAACTTCAAAAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGA TTtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGCGAAGATGGGTACT GATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCAAAGTGAAATGTTA TTATAAGtgTGGGCTGGAGCACGACTCGTGCACTGGGAGTACTTTCTTCT GCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGAAAAATTAATGGT ATCTTGTCGTGAATGGCTTCAATCAAATTTCTGGTCTTCTTAACTTTCCT CGTGCTCACAACTTCAAAAGATTATGCTGATGCTGCCATTCAGTCTGACA GCCTGATTtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGCGAAGATG GGTACTGATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCAAAGTGAA ATGTTATTATAAGtgTGGGCTGGAGCACGACTCGTGCACTGGGAGTACTT TCTTCTGCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGAAAAATT AATGGTATCTTGTCGTGAATGGCTTCAATCAAATTTCTGGTCTTCTTAAC TTTCCTCGTGCTCACAACTTCAAAAGATTATGCTGATGCTGCCATTCAGT CTGACAGCCTGATTtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGCG AAGATGGGTACTGATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCAA AGTGAAATGTTATTATAAGtgTGGGCTGGAGCACGACTCGTGCACTGGGA GTACTTTCTTCTGCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGA AAAATTAATGGTATCTTGTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001042-exon-sc0000007-1491911889:961195..961455 | TCONS_00001042-exon-sc0000007-1491911889:961195..961455 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1510915933:961195..961455 | TCONS_00001042-exon-sc0000007-1510915933:961195..961455 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1575043694:961195..961455 | TCONS_00001042-exon-sc0000007-1575043694:961195..961455 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1491911889:961580..961614 | TCONS_00001042-exon-sc0000007-1491911889:961580..961614 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1510915933:961580..961614 | TCONS_00001042-exon-sc0000007-1510915933:961580..961614 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1575043694:961580..961614 | TCONS_00001042-exon-sc0000007-1575043694:961580..961614 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1491911889:961822..961926 | TCONS_00001042-exon-sc0000007-1491911889:961822..961926 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1510915933:961822..961926 | TCONS_00001042-exon-sc0000007-1510915933:961822..961926 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1575043694:961822..961926 | TCONS_00001042-exon-sc0000007-1575043694:961822..961926 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1491911889:963187..963732 | TCONS_00001042-exon-sc0000007-1491911889:963187..963732 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1510915933:963187..963732 | TCONS_00001042-exon-sc0000007-1510915933:963187..963732 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1575043694:963187..963732 | TCONS_00001042-exon-sc0000007-1575043694:963187..963732 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1491911889:964002..964039 | TCONS_00001042-exon-sc0000007-1491911889:964002..964039 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1510915933:964002..964039 | TCONS_00001042-exon-sc0000007-1510915933:964002..964039 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1575043694:964002..964039 | TCONS_00001042-exon-sc0000007-1575043694:964002..964039 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1491911889:964474..964578 | TCONS_00001042-exon-sc0000007-1491911889:964474..964578 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1510915933:964474..964578 | TCONS_00001042-exon-sc0000007-1510915933:964474..964578 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1575043694:964474..964578 | TCONS_00001042-exon-sc0000007-1575043694:964474..964578 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1491911889:964777..965097 | TCONS_00001042-exon-sc0000007-1491911889:964777..965097 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1510915933:964777..965097 | TCONS_00001042-exon-sc0000007-1510915933:964777..965097 | Clytia hemisphaerica | exon |
TCONS_00001042-exon-sc0000007-1575043694:964777..965097 | TCONS_00001042-exon-sc0000007-1575043694:964777..965097 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000007 | supercontig | sc0000007:961195..965097 + |
Blast
The following BLAST results are available for this feature:
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