TCONS_00001042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001042
Unique NameTCONS_00001042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001042 ID=TCONS_00001042|Name=TCONS_00001042|organism=Clytia hemisphaerica|type=transcript|length=1411bp
CTTTTGTAGATATTGATACCTCAATTTTCGTTTGGAGTTTAGATTAAAAT
CCATAAGATTTAATCAGTTTGCCAGCTGTATCTATgtttaaatttgattt
gaaatgaatcattgaaaataaacataaaacaGCAATAAATCGTCTTCATA
CACCGATTTTCTCTCTGgttaaattctaaaaactttatcaCAGTTCAGCA
ACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGT
CATTTCTCAAGCTTCCACTGATGTCAATGGCTCTGGTAACTTGACGTGCA
GCGTGAAATCAAACGAGTGTTGGTCGAAAGCGAAACATCTCCCAGACCGA
GTCACGTGTCAAATCGGACATGCTACGTGTAGAGCCAAGTGCAAATATGA
GtGTGGTTTGGCTTATGATGCTTGCATCGAAGGATTTATACCCTGTTtct
caaaatattcaatttgtTCTAaacaatgtgaaaaataaatgatAATAAAG
TTGACAAATGTAAATTATTATGTGTTCCATTTTTCTGTGTTTGGGTAGGA
TCAATCTTTTGCTGTGTCACGTTTTATACAACAAGGCTCAGATTCAAAAT
TGATGGGTGGTAGCCTTAAAAGCAGGATTCTCTTTTGCTCTCGTTTTTCG
AACTTAAAATAATATCTCATCAATCATTAGGGAGGGGTTGTTTGATGCAT
TTATTTCAAAGGTCCGctaaataaaataagaaaatgatgtAGAAGAAGAA
TTTTAATTACAGCTACAGATTTAATAATATCTTCAGCTAAGCATATATTT
GCTTTCactttattacataaaagaaggAAATTTCCATTTCTCGGTAAATT
GGATTTCATAACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAAT
CAAATTTCTGGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGATT
ATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTtgtGACAAAGTCTTC
AAGTTATGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACTGTGTCA
AATCCAAGATTCCAAATGCAAAGTGAAATGTTATTATAAGtgTGGGCTGG
AGCACGACTCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTATCAC
AACTGTACCAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAATATG
TTTATATAAATTTAATCTAATTTTATAATATTATCTTGGAGAAAAGATCG
ATTAGTACGGAAATTAACTTTATTTGCAAcaagcttttttgttttttatg
ctGATCTATAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTGTATG
GAGGGCATCTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAGCTAC
ACCAATCGGGC
Run BLAST on NCBI

protein sequence of TCONS_00001042-protein

>TCONS_00001042-protein ID=TCONS_00001042-protein|Name=TCONS_00001042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MASIKFLVFLTFLVLTTSKDYADAAIQSDSLICDKVFKLCWTQAKMGTDK
VLCQIQDSKCKVKCYYKCGLEHDSCTGSTFFCFAKYHNCTSKCGKINGIL
S
Run BLAST on NCBI

transcript from alignment at sc0000007:961195..965097+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001042 ID=TCONS_00001042|Name=TCONS_00001042|organism=Clytia hemisphaerica|type=transcript|length=3903bp|location=Sequence derived from alignment at sc0000007:961195..965097+ (Clytia hemisphaerica)
CTTTTGTAGATATTGATACCTCAATTTTCGTTTGGAGTTTAGATTAAAAT
CCATAAGATTTAATCAGTTTGCCAGCTGTATCTATgtttaaatttgattt
gaaatgaatcattgaaaataaacataaaacaGCAATAAATCGTCTTCATA
CACCGATTTTCTCTCTGgttaaattctaaaaactttatcaCAGTTCAGCA
ACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGT
CATTTCTCAAGGTTAGGATGATATATGCTCGTTGTATGGTAGTGTTAGGG
TATATCTGTTGTGTGTTCCTTTTTGGTTGAAATGGTGGACTGTTGATGAA
AATTTCGATGAGCATGTTTCATTTTCTCGTTTTAGCTTCCACTGATGTCA
ATGGCTCTGGTAACTTGACGGTGAGTTTTGAAGAGAAATTGTGCTTGCAA
AGTGAAACTTCCGTCGATTAATGTTGGAATGAGTAATAATCAAATCGTTG
AAGTTTATGATGATTATTACGGATATGTAGAAGAGAGTTTTCAGTTTGCT
GAGCCCCCTTGAGCCGAACTCACACACTTAAACCCTTACTTTATATCATT
CATTGCTATTTTTTCTTGACACTTTAGTGCAGCGTGAAATCAAACGAGTG
TTGGTCGAAAGCGAAACATCTCCCAGACCGAGTCACGTGTCAAATCGGAC
ATGCTACGTGTAGAGCCAAGTGCAAATATGAGGTAAAAGTTAACACATCT
CTAAATACAAGATTTTTATGCGTCCATTTGACAGTCATAACTCAAAAAAA
TTCGGCTTTGGGCAAATTTTCAATCGCAACCTCGCCTGGCCGGCAAATTT
TTGACAAAGAACGCAATCGATACTATCTCGCACATTTTTCCAAAGTTTCA
AAACACGTATTTGTTAAATTGGTACTCAAAATGAAAAGTGAAACATTTGT
GTTATGGTGTGttgtgcgcagatatgtaatttttgcgcagattatgtaat
ttctgcgcagatatgtaatttctgcgcagatatgtaattattttgcgcag
atatgtaatttctgcgcaaatatgtaattattttgcgcaactatgtaatt
tcgaactgcgcagatatgtaattaaacttctgcgcagatatgtaaaacac
gatctttaaaatcaatggtacCCCCTTGATAGCTTTTACCATTAAAACCA
AACTCCGAAAGCTAATAATTATTGGTTtaggagttatgaattgtgttctt
ataaagttgatgtttgtgtttgtgtttatgtttgctttgaaagaaccgat
caccgaaagctaatatctattggtttgagagttatgaattgtgttcttat
aaagttgatgtttgtgtttgtgtttatgtttgctttgaaagaaccgatca
ccgaaagctaatatctattggtttgagagttatgaattgtgttcttataa
agttgatgcttataagaaaaataaatatttccagCTTAAGCACCatccta
tgtttgctttgaaagaaccgatcaccgaaagctaatatctattggtttga
gagttatgaattgtattcttataaagttaatgcttataagaaaaataaat
ttttccaagcactatcctatgtttgctttgatagaaccaaacgccgaaag
ccaatatcactttgataaaaagatattgacttgtttcttataaagatgat
gcttataataaaaacaacaatcgcCAAATGTTTGCCTTAGTCCAAGAACA
ATGTTCaagatattacttcttgtatgtgaaaaattaatgttaaAATTGAG
TCAGTTTTtcaatctgcgcagaaatttaattacatatctgcgcagctcaa
aattacatagttgcgcaaaataattacatatttgcgcagaaattacatat
cttcGCAAAATAAtcacatatctgcgcagaaattacatatctgcgcataa
TATTGTGTATTCTAAAAGTacatttattttcttgtttttcagtGTGGTTT
GGCTTATGATGCTTGCATCGAAGGATTTATACCCTGTTtctcaaaatatt
caatttgtTCTAaacaatgtgaaaaataaatgatAATAAAGTTGACAAAT
GTAAATTATTATGTGTTCCATTTTTCTGTGTTTGGGTAGGATCAATCTTT
TGCTGTGTCACGTTTTATACAACAAGGCTCAGATTCAAAATTGATGGGTG
GTAGCCTTAAAAGCAGGATTCTCTTTTGCTCTCGTTTTTCGAACTTAAAA
TAATATCTCATCAATCATTAGGGAGGGGTTGTTTGATGCATTTATTTCAA
AGGTCCGctaaataaaataagaaaatgatgtAGAAGAAGAATTTTAATTA
CAGCTACAGATTTAATAATATCTTCAGCTAAGCATATATTTGCTTTCact
ttattacataaaagaaggAAATTTCCATTTCTCGGTAAATTGGATTTCAT
AACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAATCAAATTTCT
GGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGGTTGGTTGATCT
TGTCAGTAACCTTGATTAAAATTTTAGTTGTTTTGGGCGTACGGGGGTCG
CCAACACTGAAAATACCAGAACCTCGACacagacaacaacaacaaaaatt
gcaaaactcATTCTTTTATCACGGCCCTTACATCTTTAACACCGAAACAT
CGACAAAGAAAGACCTAATAGCGTTACACCGTCAAATTCGTACCCCACTC
TCATTCGGTGTATCTTGTTCTCATCTAacattactttcactttcactctc
ATTTTAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTGTAAG
TGAGGTTTGTTTTATTTCCAAATCTAATACTCTTTATTGTCTTTCCAACG
ATGTATCTTGTTTTGGTTGTATAAAGACTGCCAACGATGGAGTTACAGCC
GACCCTGCTTGTTCGTACTTTCTAATAATCGAATCTTTTTATAACtcgtg
tttctttttaattccttataaccttataattcTATAATATTTCCGTTATT
CGAACATATAaggcccgggggggtactaggattgatgggtgtcgggtatg
tgcgtgccagacctctggacccttacccttagagagactgaattttggtg
aaaaggtgacccttagagagactcagtgtagaaaaacccaacccttagag
agactttttcacaaaaaatttctataatggGCCAAAGAAATTATCGAATT
GATAAAACAtgttcttttttttactttagtgtGACAAAGTCTTCAAGTTA
TGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACTGTGTCAAATCCA
AGATTCCAAATGCAAAGTGAAATGTTATTATAAGGTTAGTTTACTTTATA
TATACAATTCCTTCCTATATTCATTCGCAATTCATACCAATCAATATTTC
TCACTGATGCACAGTATGTAACAGTTTTTCAAAGCTATTCCTCAATCATT
AAAAATACCCAATTAAAATTTCCCAATTAAGATTtagaattgaaattttg
aattcttatttctcttttttctttcattttagtgTGGGCTGGAGCACGAC
TCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTATCACAACTGTAC
CAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAATATGTTTATATA
AATTTAATCTAATTTTATAATATTATCTTGGAGAAAAGATCGATTAGTAC
GGAAATTAACTTTATTTGCAAcaagcttttttgttttttatgctGATCTA
TAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTGTATGGAGGGCAT
CTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAGCTACACCAATCG
GGC

Coding sequence (CDS) from alignment at sc0000007:961195..965097+

>TCONS_00001042 ID=TCONS_00001042|Name=TCONS_00001042|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000007:961195..965097+ (Clytia hemisphaerica)
ATGGCTTCAATCAAATTTCTGGTCTTCTTAACTTTCCTCGTGCTCACAAC
TTCAAAAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTtgtG
ACAAAGTCTTCAAGTTATGCTGGACACAGGCGAAGATGGGTACTGATAAA
GTACTGTGTCAAATCCAAGATTCCAAATGCAAAGTGAAATGTTATTATAA
GtgTGGGCTGGAGCACGACTCGTGCACTGGGAGTACTTTCTTCTGCTTTG
CAAAGTATCACAACTGTACCAGCAAATGTGGAAAAATTAATGGTATCTTG
TCGTGAATGGCTTCAATCAAATTTCTGGTCTTCTTAACTTTCCTCGTGCT
CACAACTTCAAAAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGA
TTtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGCGAAGATGGGTACT
GATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCAAAGTGAAATGTTA
TTATAAGtgTGGGCTGGAGCACGACTCGTGCACTGGGAGTACTTTCTTCT
GCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGAAAAATTAATGGT
ATCTTGTCGTGAATGGCTTCAATCAAATTTCTGGTCTTCTTAACTTTCCT
CGTGCTCACAACTTCAAAAGATTATGCTGATGCTGCCATTCAGTCTGACA
GCCTGATTtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGCGAAGATG
GGTACTGATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCAAAGTGAA
ATGTTATTATAAGtgTGGGCTGGAGCACGACTCGTGCACTGGGAGTACTT
TCTTCTGCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGAAAAATT
AATGGTATCTTGTCGTGAATGGCTTCAATCAAATTTCTGGTCTTCTTAAC
TTTCCTCGTGCTCACAACTTCAAAAGATTATGCTGATGCTGCCATTCAGT
CTGACAGCCTGATTtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGCG
AAGATGGGTACTGATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCAA
AGTGAAATGTTATTATAAGtgTGGGCTGGAGCACGACTCGTGCACTGGGA
GTACTTTCTTCTGCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGA
AAAATTAATGGTATCTTGTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000593XLOC_000593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001042-exon-sc0000007-1491911889:961195..961455TCONS_00001042-exon-sc0000007-1491911889:961195..961455Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:961195..961455TCONS_00001042-exon-sc0000007-1510915933:961195..961455Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:961195..961455TCONS_00001042-exon-sc0000007-1575043694:961195..961455Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:961580..961614TCONS_00001042-exon-sc0000007-1491911889:961580..961614Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:961580..961614TCONS_00001042-exon-sc0000007-1510915933:961580..961614Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:961580..961614TCONS_00001042-exon-sc0000007-1575043694:961580..961614Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:961822..961926TCONS_00001042-exon-sc0000007-1491911889:961822..961926Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:961822..961926TCONS_00001042-exon-sc0000007-1510915933:961822..961926Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:961822..961926TCONS_00001042-exon-sc0000007-1575043694:961822..961926Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:963187..963732TCONS_00001042-exon-sc0000007-1491911889:963187..963732Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:963187..963732TCONS_00001042-exon-sc0000007-1510915933:963187..963732Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:963187..963732TCONS_00001042-exon-sc0000007-1575043694:963187..963732Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:964002..964039TCONS_00001042-exon-sc0000007-1491911889:964002..964039Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:964002..964039TCONS_00001042-exon-sc0000007-1510915933:964002..964039Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:964002..964039TCONS_00001042-exon-sc0000007-1575043694:964002..964039Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:964474..964578TCONS_00001042-exon-sc0000007-1491911889:964474..964578Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:964474..964578TCONS_00001042-exon-sc0000007-1510915933:964474..964578Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:964474..964578TCONS_00001042-exon-sc0000007-1575043694:964474..964578Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:964777..965097TCONS_00001042-exon-sc0000007-1491911889:964777..965097Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:964777..965097TCONS_00001042-exon-sc0000007-1510915933:964777..965097Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:964777..965097TCONS_00001042-exon-sc0000007-1575043694:964777..965097Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001042-proteinTCONS_00001042-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:961195..965097 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.654574	0.643563	0.0786567	0.20695	0	0	0.223284	0.250843	1.39188	1.08768	1.10065	1.02209	3.44204	2.58362	0.787827	1.22765	3.85913	4.83509	15.5339	7.79744	30.5122	28.3518	11.1115	12.2167	24.2269	24.884	0.428653	0.40664	0.432828	0.432071
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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