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TCONS_00001042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001042
Unique NameTCONS_00001042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001042 ID=TCONS_00001042|Name=TCONS_00001042|organism=Clytia hemisphaerica|type=transcript|length=1411bp
CTTTTGTAGATATTGATACCTCAATTTTCGTTTGGAGTTTAGATTAAAAT
CCATAAGATTTAATCAGTTTGCCAGCTGTATCTATgtttaaatttgattt
gaaatgaatcattgaaaataaacataaaacaGCAATAAATCGTCTTCATA
CACCGATTTTCTCTCTGgttaaattctaaaaactttatcaCAGTTCAGCA
ACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGT
CATTTCTCAAGCTTCCACTGATGTCAATGGCTCTGGTAACTTGACGTGCA
GCGTGAAATCAAACGAGTGTTGGTCGAAAGCGAAACATCTCCCAGACCGA
GTCACGTGTCAAATCGGACATGCTACGTGTAGAGCCAAGTGCAAATATGA
GtGTGGTTTGGCTTATGATGCTTGCATCGAAGGATTTATACCCTGTTtct
caaaatattcaatttgtTCTAaacaatgtgaaaaataaatgatAATAAAG
TTGACAAATGTAAATTATTATGTGTTCCATTTTTCTGTGTTTGGGTAGGA
TCAATCTTTTGCTGTGTCACGTTTTATACAACAAGGCTCAGATTCAAAAT
TGATGGGTGGTAGCCTTAAAAGCAGGATTCTCTTTTGCTCTCGTTTTTCG
AACTTAAAATAATATCTCATCAATCATTAGGGAGGGGTTGTTTGATGCAT
TTATTTCAAAGGTCCGctaaataaaataagaaaatgatgtAGAAGAAGAA
TTTTAATTACAGCTACAGATTTAATAATATCTTCAGCTAAGCATATATTT
GCTTTCactttattacataaaagaaggAAATTTCCATTTCTCGGTAAATT
GGATTTCATAACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAAT
CAAATTTCTGGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGATT
ATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTtgtGACAAAGTCTTC
AAGTTATGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACTGTGTCA
AATCCAAGATTCCAAATGCAAAGTGAAATGTTATTATAAGtgTGGGCTGG
AGCACGACTCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTATCAC
AACTGTACCAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAATATG
TTTATATAAATTTAATCTAATTTTATAATATTATCTTGGAGAAAAGATCG
ATTAGTACGGAAATTAACTTTATTTGCAAcaagcttttttgttttttatg
ctGATCTATAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTGTATG
GAGGGCATCTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAGCTAC
ACCAATCGGGC
Run BLAST on NCBI

protein sequence of TCONS_00001042-protein

>TCONS_00001042-protein ID=TCONS_00001042-protein|Name=TCONS_00001042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MASIKFLVFLTFLVLTTSKDYADAAIQSDSLICDKVFKLCWTQAKMGTDK
VLCQIQDSKCKVKCYYKCGLEHDSCTGSTFFCFAKYHNCTSKCGKINGIL
S
Run BLAST on NCBI

transcript from alignment at sc0000007:961195..965097+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001042 ID=TCONS_00001042|Name=TCONS_00001042|organism=Clytia hemisphaerica|type=transcript|length=3903bp|location=Sequence derived from alignment at sc0000007:961195..965097+ (Clytia hemisphaerica)
CTTTTGTAGATATTGATACCTCAATTTTCGTTTGGAGTTTAGATTAAAAT CCATAAGATTTAATCAGTTTGCCAGCTGTATCTATgtttaaatttgattt gaaatgaatcattgaaaataaacataaaacaGCAATAAATCGTCTTCATA CACCGATTTTCTCTCTGgttaaattctaaaaactttatcaCAGTTCAGCA ACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGT CATTTCTCAAGGTTAGGATGATATATGCTCGTTGTATGGTAGTGTTAGGG TATATCTGTTGTGTGTTCCTTTTTGGTTGAAATGGTGGACTGTTGATGAA AATTTCGATGAGCATGTTTCATTTTCTCGTTTTAGCTTCCACTGATGTCA ATGGCTCTGGTAACTTGACGGTGAGTTTTGAAGAGAAATTGTGCTTGCAA AGTGAAACTTCCGTCGATTAATGTTGGAATGAGTAATAATCAAATCGTTG AAGTTTATGATGATTATTACGGATATGTAGAAGAGAGTTTTCAGTTTGCT GAGCCCCCTTGAGCCGAACTCACACACTTAAACCCTTACTTTATATCATT CATTGCTATTTTTTCTTGACACTTTAGTGCAGCGTGAAATCAAACGAGTG TTGGTCGAAAGCGAAACATCTCCCAGACCGAGTCACGTGTCAAATCGGAC ATGCTACGTGTAGAGCCAAGTGCAAATATGAGGTAAAAGTTAACACATCT CTAAATACAAGATTTTTATGCGTCCATTTGACAGTCATAACTCAAAAAAA TTCGGCTTTGGGCAAATTTTCAATCGCAACCTCGCCTGGCCGGCAAATTT TTGACAAAGAACGCAATCGATACTATCTCGCACATTTTTCCAAAGTTTCA AAACACGTATTTGTTAAATTGGTACTCAAAATGAAAAGTGAAACATTTGT GTTATGGTGTGttgtgcgcagatatgtaatttttgcgcagattatgtaat ttctgcgcagatatgtaatttctgcgcagatatgtaattattttgcgcag atatgtaatttctgcgcaaatatgtaattattttgcgcaactatgtaatt tcgaactgcgcagatatgtaattaaacttctgcgcagatatgtaaaacac gatctttaaaatcaatggtacCCCCTTGATAGCTTTTACCATTAAAACCA AACTCCGAAAGCTAATAATTATTGGTTtaggagttatgaattgtgttctt ataaagttgatgtttgtgtttgtgtttatgtttgctttgaaagaaccgat caccgaaagctaatatctattggtttgagagttatgaattgtgttcttat aaagttgatgtttgtgtttgtgtttatgtttgctttgaaagaaccgatca ccgaaagctaatatctattggtttgagagttatgaattgtgttcttataa agttgatgcttataagaaaaataaatatttccagCTTAAGCACCatccta tgtttgctttgaaagaaccgatcaccgaaagctaatatctattggtttga gagttatgaattgtattcttataaagttaatgcttataagaaaaataaat ttttccaagcactatcctatgtttgctttgatagaaccaaacgccgaaag ccaatatcactttgataaaaagatattgacttgtttcttataaagatgat gcttataataaaaacaacaatcgcCAAATGTTTGCCTTAGTCCAAGAACA ATGTTCaagatattacttcttgtatgtgaaaaattaatgttaaAATTGAG TCAGTTTTtcaatctgcgcagaaatttaattacatatctgcgcagctcaa aattacatagttgcgcaaaataattacatatttgcgcagaaattacatat cttcGCAAAATAAtcacatatctgcgcagaaattacatatctgcgcataa TATTGTGTATTCTAAAAGTacatttattttcttgtttttcagtGTGGTTT GGCTTATGATGCTTGCATCGAAGGATTTATACCCTGTTtctcaaaatatt caatttgtTCTAaacaatgtgaaaaataaatgatAATAAAGTTGACAAAT GTAAATTATTATGTGTTCCATTTTTCTGTGTTTGGGTAGGATCAATCTTT TGCTGTGTCACGTTTTATACAACAAGGCTCAGATTCAAAATTGATGGGTG GTAGCCTTAAAAGCAGGATTCTCTTTTGCTCTCGTTTTTCGAACTTAAAA TAATATCTCATCAATCATTAGGGAGGGGTTGTTTGATGCATTTATTTCAA AGGTCCGctaaataaaataagaaaatgatgtAGAAGAAGAATTTTAATTA CAGCTACAGATTTAATAATATCTTCAGCTAAGCATATATTTGCTTTCact ttattacataaaagaaggAAATTTCCATTTCTCGGTAAATTGGATTTCAT AACTTCCTCAAGGCTTATTCAGGTTCCATCATGGCTTCAATCAAATTTCT GGTCTTCTTAACTTTCCTCGTGCTCACAACTTCAAAAGGTTGGTTGATCT TGTCAGTAACCTTGATTAAAATTTTAGTTGTTTTGGGCGTACGGGGGTCG CCAACACTGAAAATACCAGAACCTCGACacagacaacaacaacaaaaatt gcaaaactcATTCTTTTATCACGGCCCTTACATCTTTAACACCGAAACAT CGACAAAGAAAGACCTAATAGCGTTACACCGTCAAATTCGTACCCCACTC TCATTCGGTGTATCTTGTTCTCATCTAacattactttcactttcactctc ATTTTAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTGTAAG TGAGGTTTGTTTTATTTCCAAATCTAATACTCTTTATTGTCTTTCCAACG ATGTATCTTGTTTTGGTTGTATAAAGACTGCCAACGATGGAGTTACAGCC GACCCTGCTTGTTCGTACTTTCTAATAATCGAATCTTTTTATAACtcgtg tttctttttaattccttataaccttataattcTATAATATTTCCGTTATT CGAACATATAaggcccgggggggtactaggattgatgggtgtcgggtatg tgcgtgccagacctctggacccttacccttagagagactgaattttggtg aaaaggtgacccttagagagactcagtgtagaaaaacccaacccttagag agactttttcacaaaaaatttctataatggGCCAAAGAAATTATCGAATT GATAAAACAtgttcttttttttactttagtgtGACAAAGTCTTCAAGTTA TGCTGGACACAGGCGAAGATGGGTACTGATAAAGTACTGTGTCAAATCCA AGATTCCAAATGCAAAGTGAAATGTTATTATAAGGTTAGTTTACTTTATA TATACAATTCCTTCCTATATTCATTCGCAATTCATACCAATCAATATTTC TCACTGATGCACAGTATGTAACAGTTTTTCAAAGCTATTCCTCAATCATT AAAAATACCCAATTAAAATTTCCCAATTAAGATTtagaattgaaattttg aattcttatttctcttttttctttcattttagtgTGGGCTGGAGCACGAC TCGTGCACTGGGAGTACTTTCTTCTGCTTTGCAAAGTATCACAACTGTAC CAGCAAATGTGGAAAAATTAATGGTATCTTGTCGTGAATATGTTTATATA AATTTAATCTAATTTTATAATATTATCTTGGAGAAAAGATCGATTAGTAC GGAAATTAACTTTATTTGCAAcaagcttttttgttttttatgctGATCTA TAATTTAGGGGGTAGGCAATCTAATATCAATCCATGTGTATGGAGGGCAT CTGGTCAAATTGGTGCTTTGTTCCAAATTGCAGAATAGCTACACCAATCG GGC

Coding sequence (CDS) from alignment at sc0000007:961195..965097+

>TCONS_00001042 ID=TCONS_00001042|Name=TCONS_00001042|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000007:961195..965097+ (Clytia hemisphaerica)
ATGGCTTCAATCAAATTTCTGGTCTTCTTAACTTTCCTCGTGCTCACAAC
TTCAAAAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGATTtgtG
ACAAAGTCTTCAAGTTATGCTGGACACAGGCGAAGATGGGTACTGATAAA
GTACTGTGTCAAATCCAAGATTCCAAATGCAAAGTGAAATGTTATTATAA
GtgTGGGCTGGAGCACGACTCGTGCACTGGGAGTACTTTCTTCTGCTTTG
CAAAGTATCACAACTGTACCAGCAAATGTGGAAAAATTAATGGTATCTTG
TCGTGAATGGCTTCAATCAAATTTCTGGTCTTCTTAACTTTCCTCGTGCT
CACAACTTCAAAAGATTATGCTGATGCTGCCATTCAGTCTGACAGCCTGA
TTtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGCGAAGATGGGTACT
GATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCAAAGTGAAATGTTA
TTATAAGtgTGGGCTGGAGCACGACTCGTGCACTGGGAGTACTTTCTTCT
GCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGAAAAATTAATGGT
ATCTTGTCGTGAATGGCTTCAATCAAATTTCTGGTCTTCTTAACTTTCCT
CGTGCTCACAACTTCAAAAGATTATGCTGATGCTGCCATTCAGTCTGACA
GCCTGATTtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGCGAAGATG
GGTACTGATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCAAAGTGAA
ATGTTATTATAAGtgTGGGCTGGAGCACGACTCGTGCACTGGGAGTACTT
TCTTCTGCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGAAAAATT
AATGGTATCTTGTCGTGAATGGCTTCAATCAAATTTCTGGTCTTCTTAAC
TTTCCTCGTGCTCACAACTTCAAAAGATTATGCTGATGCTGCCATTCAGT
CTGACAGCCTGATTtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGCG
AAGATGGGTACTGATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCAA
AGTGAAATGTTATTATAAGtgTGGGCTGGAGCACGACTCGTGCACTGGGA
GTACTTTCTTCTGCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGA
AAAATTAATGGTATCTTGTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000593XLOC_000593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001042-exon-sc0000007-1491911889:961195..961455TCONS_00001042-exon-sc0000007-1491911889:961195..961455Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:961195..961455TCONS_00001042-exon-sc0000007-1510915933:961195..961455Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:961195..961455TCONS_00001042-exon-sc0000007-1575043694:961195..961455Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:961580..961614TCONS_00001042-exon-sc0000007-1491911889:961580..961614Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:961580..961614TCONS_00001042-exon-sc0000007-1510915933:961580..961614Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:961580..961614TCONS_00001042-exon-sc0000007-1575043694:961580..961614Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:961822..961926TCONS_00001042-exon-sc0000007-1491911889:961822..961926Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:961822..961926TCONS_00001042-exon-sc0000007-1510915933:961822..961926Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:961822..961926TCONS_00001042-exon-sc0000007-1575043694:961822..961926Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:963187..963732TCONS_00001042-exon-sc0000007-1491911889:963187..963732Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:963187..963732TCONS_00001042-exon-sc0000007-1510915933:963187..963732Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:963187..963732TCONS_00001042-exon-sc0000007-1575043694:963187..963732Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:964002..964039TCONS_00001042-exon-sc0000007-1491911889:964002..964039Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:964002..964039TCONS_00001042-exon-sc0000007-1510915933:964002..964039Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:964002..964039TCONS_00001042-exon-sc0000007-1575043694:964002..964039Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:964474..964578TCONS_00001042-exon-sc0000007-1491911889:964474..964578Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:964474..964578TCONS_00001042-exon-sc0000007-1510915933:964474..964578Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:964474..964578TCONS_00001042-exon-sc0000007-1575043694:964474..964578Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1491911889:964777..965097TCONS_00001042-exon-sc0000007-1491911889:964777..965097Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1510915933:964777..965097TCONS_00001042-exon-sc0000007-1510915933:964777..965097Clytia hemisphaericaexon
TCONS_00001042-exon-sc0000007-1575043694:964777..965097TCONS_00001042-exon-sc0000007-1575043694:964777..965097Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001042-proteinTCONS_00001042-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:961195..965097 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.654574 0.643563 0.0786567 0.20695 0 0 0.223284 0.250843 1.39188 1.08768 1.10065 1.02209 3.44204 2.58362 0.787827 1.22765 3.85913 4.83509 15.5339 7.79744 30.5122 28.3518 11.1115 12.2167 24.2269 24.884 0.428653 0.40664 0.432828 0.432071
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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