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TCONS_00001041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001041
Unique NameTCONS_00001041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001041 ID=TCONS_00001041|Name=TCONS_00001041|organism=Clytia hemisphaerica|type=transcript|length=230bp
GTTTGATTAAAAAACGGTTACTAATGCTTCCACTGATGTCAATGGCTCTG
GTAACTTGACGTGCAGCGTGAAATCAAACGAGTGTTGGTCGAAAGCGAAA
CATCTCCCAGACCGAGTCACGTGTCAAATCGGACATGCTACGTGTAGAGC
CAAGTGCAAATATGAGtGTGGTTTGGCCTATGATGCTTGCACCGGATTGA
CCGGAGCATTTATACACTGTTTGTCAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000007:961159..969670+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001041 ID=TCONS_00001041|Name=TCONS_00001041|organism=Clytia hemisphaerica|type=transcript|length=8512bp|location=Sequence derived from alignment at sc0000007:961159..969670+ (Clytia hemisphaerica)
GTTTGATTAAAAAACGGTTACTAATGGTATAATTTACTTTTGTAGATATT GATACCTCAATTTTCGTTTGGAGTTTAGATTAAAATCCATAAGATTTAAT CAGTTTGCCAGCTGTATCTATgtttaaatttgatttgaaatgaatcattg aaaataaacataaaacaGCAATAAATCGTCTTCATACACCGATTTTCTCT CTGgttaaattctaaaaactttatcaCAGTTCAGCAACCATGTATTCGTT GAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGTCATTTCTCAAGGTT AGGATGATATATGCTCGTTGTATGGTAGTGTTAGGGTATATCTGTTGTGT GTTCCTTTTTGGTTGAAATGGTGGACTGTTGATGAAAATTTCGATGAGCA TGTTTCATTTTCTCGTTTTAGCTTCCACTGATGTCAATGGCTCTGGTAAC TTGACGGTGAGTTTTGAAGAGAAATTGTGCTTGCAAAGTGAAACTTCCGT CGATTAATGTTGGAATGAGTAATAATCAAATCGTTGAAGTTTATGATGAT TATTACGGATATGTAGAAGAGAGTTTTCAGTTTGCTGAGCCCCCTTGAGC CGAACTCACACACTTAAACCCTTACTTTATATCATTCATTGCTATTTTTT CTTGACACTTTAGTGCAGCGTGAAATCAAACGAGTGTTGGTCGAAAGCGA AACATCTCCCAGACCGAGTCACGTGTCAAATCGGACATGCTACGTGTAGA GCCAAGTGCAAATATGAGGTAAAAGTTAACACATCTCTAAATACAAGATT TTTATGCGTCCATTTGACAGTCATAACTCAAAAAAATTCGGCTTTGGGCA AATTTTCAATCGCAACCTCGCCTGGCCGGCAAATTTTTGACAAAGAACGC AATCGATACTATCTCGCACATTTTTCCAAAGTTTCAAAACACGTATTTGT TAAATTGGTACTCAAAATGAAAAGTGAAACATTTGTGTTATGGTGTGttg tgcgcagatatgtaatttttgcgcagattatgtaatttctgcgcagatat gtaatttctgcgcagatatgtaattattttgcgcagatatgtaatttctg cgcaaatatgtaattattttgcgcaactatgtaatttcgaactgcgcaga tatgtaattaaacttctgcgcagatatgtaaaacacgatctttaaaatca atggtacCCCCTTGATAGCTTTTACCATTAAAACCAAACTCCGAAAGCTA ATAATTATTGGTTtaggagttatgaattgtgttcttataaagttgatgtt tgtgtttgtgtttatgtttgctttgaaagaaccgatcaccgaaagctaat atctattggtttgagagttatgaattgtgttcttataaagttgatgtttg tgtttgtgtttatgtttgctttgaaagaaccgatcaccgaaagctaatat ctattggtttgagagttatgaattgtgttcttataaagttgatgcttata agaaaaataaatatttccagCTTAAGCACCatcctatgtttgctttgaaa gaaccgatcaccgaaagctaatatctattggtttgagagttatgaattgt attcttataaagttaatgcttataagaaaaataaatttttccaagcacta tcctatgtttgctttgatagaaccaaacgccgaaagccaatatcactttg ataaaaagatattgacttgtttcttataaagatgatgcttataataaaaa caacaatcgcCAAATGTTTGCCTTAGTCCAAGAACAATGTTCaagatatt acttcttgtatgtgaaaaattaatgttaaAATTGAGTCAGTTTTtcaatc tgcgcagaaatttaattacatatctgcgcagctcaaaattacatagttgc gcaaaataattacatatttgcgcagaaattacatatcttcGCAAAATAAt cacatatctgcgcagaaattacatatctgcgcataaTATTGTGTATTCTA AAAGTacatttattttcttgtttttcagtGTGGTTTGGCTTATGATGCTT GCATCGAAGGATTTATACCCTGTTtctcaaaatattcaatttgtTCTAaa caatgtgaaaaataaatgatAATAAAGTTGACAAATGTAAATTATTATGT GTTCCATTTTTCTGTGTTTGGGTAGGATCAATCTTTTGCTGTGTCACGTT TTATACAACAAGGCTCAGATTCAAAATTGATGGGTGGTAGCCTTAAAAGC AGGATTCTCTTTTGCTCTCGTTTTTCGAACTTAAAATAATATCTCATCAA TCATTAGGGAGGGGTTGTTTGATGCATTTATTTCAAAGGTCCGctaaata aaataagaaaatgatgtAGAAGAAGAATTTTAATTACAGCTACAGATTTA ATAATATCTTCAGCTAAGCATATATTTGCTTTCactttattacataaaag aaggAAATTTCCATTTCTCGGTAAATTGGATTTCATAACTTCCTCAAGGC TTATTCAGGTTCCATCATGGCTTCAATCAAATTTCTGGTCTTCTTAACTT TCCTCGTGCTCACAACTTCAAAAGGTTGGTTGATCTTGTCAGTAACCTTG ATTAAAATTTTAGTTGTTTTGGGCGTACGGGGGTCGCCAACACTGAAAAT ACCAGAACCTCGACacagacaacaacaacaaaaattgcaaaactcATTCT TTTATCACGGCCCTTACATCTTTAACACCGAAACATCGACAAAGAAAGAC CTAATAGCGTTACACCGTCAAATTCGTACCCCACTCTCATTCGGTGTATC TTGTTCTCATCTAacattactttcactttcactctcATTTTAGATTATGC TGATGCTGCCATTCAGTCTGACAGCCTGATTGTAAGTGAGGTTTGTTTTA TTTCCAAATCTAATACTCTTTATTGTCTTTCCAACGATGTATCTTGTTTT GGTTGTATAAAGACTGCCAACGATGGAGTTACAGCCGACCCTGCTTGTTC GTACTTTCTAATAATCGAATCTTTTTATAACtcgtgtttctttttaattc cttataaccttataattcTATAATATTTCCGTTATTCGAACATATAaggc ccgggggggtactaggattgatgggtgtcgggtatgtgcgtgccagacct ctggacccttacccttagagagactgaattttggtgaaaaggtgaccctt agagagactcagtgtagaaaaacccaacccttagagagactttttcacaa aaaatttctataatggGCCAAAGAAATTATCGAATTGATAAAACAtgttc ttttttttactttagtgtGACAAAGTCTTCAAGTTATGCTGGACACAGGC GAAGATGGGTACTGATAAAGTACTGTGTCAAATCCAAGATTCCAAATGCA AAGTGAAATGTTATTATAAGGTTAGTTTACTTTATATATACAATTCCTTC CTATATTCATTCGCAATTCATACCAATCAATATTTCTCACTGATGCACAG TATGTAACAGTTTTTCAAAGCTATTCCTCAATCATTAAAAATACCCAATT AAAATTTCCCAATTAAGATTtagaattgaaattttgaattcttatttctc ttttttctttcattttagtgTGGGCTGGAGCACGACTCGTGCACTGGGAG TACTTTCTTCTGCTTTGCAAAGTATCACAACTGTACCAGCAAATGTGGAA AAATTAATGGTATCTTGTCGTGAATATGTTTATATAAATTTAATCTAATT TTATAATATTATCTTGGAGAAAAGATCGATTAGTACGGAAATTAACTTTA TTTGCAAcaagcttttttgttttttatgctGATCTATAATTTAGGGGGTA GGCAATCTAATATCAATCCATGTGTATGGAGGGCATCTGGTCAAATTGGT GCTTTGTTCCAAATTGCAGAATAGCTACACCAATCGGGCCTACTCTTTTT CTAGATATGGATGTAAAGGGAAAGAAAATATTGCCTGACATTTAAAAGCA TTATCTTCCGTAAAAAATTTCTGCACGTGTCTTCAGCGTCCAAAATATTC GAAGTCTGCCAATGTTCTTGATATTGAAGTTTAAAACTAAAAATGCCCTT GACATGTTTTCTTCTCGCATATTCTTCGGATTTTTATGCAATTTCCTTTC CTGGGttttttagagtccacaaagtcttataaaaatattttgatcatcAA AGCCTTAATGTTCGTTAGTTCGTTCTAATacttaatgggataaattttcg tggGGACTAAATTTCgtggttgagctcatccgcgaaattttaagtttttg cgGGGTCTTAAATACACGGCCCTTCACACACATTATTGGTAGATTATATT TTCATGATTTGATATGCATTATTAGCTCTTCTTTGATGCAACCataaaca tataaacgactggacatcaaacttctttgtttttttttgtataaagcgct gctagcttcgttgccgcctcgttaaaaacctaaaatgaaacaataaattt tgatgatatacctcttTGAAATACCTTGCTAATAACGTCAAAACCttgac aaaagtctctgttgttctacttttctcaagtcttttatctacatcataac aaagataacagaggcaaaatcatcgtcagcttgtcaaaactccaactaaa atttctaaatttaaaaacaaaaaaaatcagagaatatacaacatgctcca tctcaccaacacaagaaaaatggtttctttttttgtttcatgtgaaaaaa gtgagggaaatacccaaaagacacgctgggGATACGTATCCCCAAGCCTT AtgggattcaaattatgatgTTCTTATGACGCAGACTCTAAACTTTGGCA AACTacttttttcaagtcaaaaaaattattggagtgacaaaagtgattca cACCATAAATTCACACGCAgatgaaattctgcatttcagagatGAAAGTG CTGCTAaaatcatagtccgtataaaaaatcCTGGTCTGGAAGTTtattgt tttgactttttgttagctttttcctctGTTAATAGtgaagttaagtaaat cggtaaaacgacgacgaacgaaaatttaacaggctagtgagtttcaacca atcaaattttgtattttcactagcctattacatttttcgtccgtcgtcgt gattatcctggtatgcttaagGCTATgcttttttcgcgttggtgccaAAA CTCgagaatattgtcggatttttcatgccaattttgaaatacatgcGACA ACGAAGCTCgtttcaaagagacaataaaagataatCTCctgtcgtttata tgttcatgatgcaacttaatatttcaaaagtagTTATTTAAtaagttttt gagttttgttcaaAATCATTCCAAATAAAATGCGCGAattttaatccccg caaaagtttatcccattaaagtaaacaGAACGTGTAGTGGGCTATCTCCA AAATAaagatttcttgattttcaacaTTAGCGTAAGGGGATAAACTCTGG ATTCGTGGACACTAATTCCCAAACAAACGCGCTAATAAGCCAAAGGAAAT GAATACTTAATGTGGGGTGAAAGTCCTACGatcaaatttcctttcttttt aagaACTGGTGGCgtattttaattaaaatttgattAATTTCAGTTAAAAT TAGTCCGTTATAGTTATATGACACCCAATTTATTTATCTAGATGGTGTTT CCTTTTCacattttaaacattgaatgtTGAGAAATGTTGACGATTTTATT GCAAATTCTTTTGTTCgaaatgatgatgatgatgatgtttaaTCAGTATC ACAGCTGTTTAAATTCATGAAATCcgatttttggtgttttatgACAAAAA CAAGGTAATAAAAAAGGGAACAGTTTTTTGTCTCATTCTTTACTTTCTCC ACACAACCAACAACACCATGAAGTCATTCACTATTTTCGCTTTCTTGGCT TTTGTAGCCTTTGCTTCCGCTGACTTCGCTTTCGAAGGTAAGATTCAGTC AAAACACGCGCGATGGTGTTTTTCACAAACTAAACCTTCAAGTCCAGATG ACATACGAGGGCCACCAACGCTCAAATAGACCGACATTATTTCATTCGAG CACCACAACACTAACAGAATATAAGGGGCTTACACCGAAACACTTTCAGA CCTGAAGCACCCCCTTTTCACttcaaatgttttattttaactttcgcaaa tttaattTTAGATATGTATGATGGTGGATCAGGTGATGTCAGTGTAAGTC AGCTCTTCATAATTAAgcggaattaattttggcgaacgttccctttttgt tcaatattttagctggAAAAAGagtaaattgaaagaaaattaaatttagc gagaacttattttggcgaatgacctatAAATNAGGGGCTTGTACCGAAAC ACTTTCAGACCTGAAGCATCGCCCCCAGTTTACGTCACCTTATTAGAGAA GTTAACTGAGGAAAATGCGCAAATAATATTTTGGATCTTCTTTGTAGAAC TTTTCACTTCAAGagcccccagcggaccctcaattcacgcaatcacacaA TTTTTCCTCGAGTTTTACGCAATAACCCAATATTGGTGAAGAATACAACA TGGGAACATGAATGGTGTAATAAATTATCATGGTAATGTGATGACGTATT CCTTATTTCCTGTCTTGAAAATAGTAAATAAGAAAAATTGAGCCAAATAC AGTAAAAGTAATATCTGGTAATATCGATTAATTAAAAAACTGTTACTAAT GGTATCATTTCCTTTTATAGATATTATTACCTCAATTTTCGTTTGGAGTT TAgattaaaattcataaaatttaatCAGTTTGCCAGCTGTCAACCTCGTA CCCAGGGCGATAAGCTTTCTGATATTAGATAGGACGCTTAGACGTAACAG TGAGCTTCCTATTTGCCTCTCATCTAGACTAGCAACTATATTTTCCCGCG CGGCCGCTGACTGTTCGCCATGGAATCGAGGTTGGCCAGCTGTATCTATG TTTGAATGTTTTATGAAATGAAcccggggggcactcgatctgaaaacgac catacgttcggcccaaaatttggcttctaaaatcggacccttacagtgca gtgaatttccatgaaaaatcatacccttacagtgcactttttcaaaattt ctcgcccgtaagggcgaatttttgcacttttccaagaaaatgtggaattt ttcctccaaaattgaccaattttgtgccaatttaccaaaaaattggcctt ttatcacaatttcctacccttacagtgcagatcagtgcagttttgtaatt tcctacccttacagtgcagatcagtgcagttttgtaatttcctaccctta cagtgcagatcagtgcagttttgtaatttcctacccttacagtgcagatc agtgcagttttgtaatttcctacccttacagtgcagatcagtgcagtttt gtaatttcctacccttacagtgcactagctgaactatgaaaaaacctacc cttaagggccgatcGGCTGGTAGGTCATTTTCCTtgagggcccccccccc cctccccggggaaatgaatcattaaaaataaacataaaacaGCAATAAAT CGTCTTCAAACACAAACATTTTCTCTCTGGtgaaattctaaaaactttat caCAGTTCAGCAACCATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTT TGTTACCCTCGTCATTTCTCAGGTTAGGATGATATATGCTCGTTGTATGT TAGTGTATACAGATACTTATTGTGCGTTTCTTTTTGGTTGTGGTAGTTGA AAAGCTGGACTGAAATTTCGATGAGCATGTTTCATTTTCTCGTTTTAGAT TCCACTGATTCCAATGGCTCTGGTAACTTAACGGTGAGTTTTGAAGAGAA ATTCTCCTTGCAAAGTGAAACTTCCGTCGATTAATGTTGGAATGACTAAT AATCAAAATCGTTGAAGTTTGTGATGATTATTACGGATATGTAGAAGAGA GTTTTCAGTTCGTTGAGCCCCCCTGAGCCGAACTTACACACTTAAACCCT TACTTTATATCATTCATTGCTATTTTTTCTTGACACTTATTAGTGCAGCG AGAAATCAAACGAGTGTTGGTCGAAAGCGAAACATCTTGCAGACCGAGTC ACGTGTCAAATCGGACATGCCAAGTGTAAAGCCAAGTGCAAATATGAGGT AAATGTTAACAGCTCTCTAAATACAAGATTTTTATGAGTCCATTTGACAG TCATAACTCAAAAAAAGTTCGActttggtcaaattttcaattgcAACATC GCCTGGCCGGCAAATTTTTGACCAAGAACGCAATCGATACTATCTCGCAC CTTTTTCCAAAGTTTCAAAACACGTATTTgttaaaatgaaagtgaaacaT GGGTGTTATGGTGTATTCTAAAGGTAcattctttttcttgtttttcagtG TGGTTTGGCCTATGATGCTTGCACCGGATTGACCGGAGCATTTATACACT GTTTGTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000593XLOC_000593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001041-exon-sc0000007-1491911889:961159..961184TCONS_00001041-exon-sc0000007-1491911889:961159..961184Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1510915933:961159..961184TCONS_00001041-exon-sc0000007-1510915933:961159..961184Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1575043694:961159..961184TCONS_00001041-exon-sc0000007-1575043694:961159..961184Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1491911889:961580..961614TCONS_00001041-exon-sc0000007-1491911889:961580..961614Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1510915933:961580..961614TCONS_00001041-exon-sc0000007-1510915933:961580..961614Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1575043694:961580..961614TCONS_00001041-exon-sc0000007-1575043694:961580..961614Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1491911889:961822..961926TCONS_00001041-exon-sc0000007-1491911889:961822..961926Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1510915933:961822..961926TCONS_00001041-exon-sc0000007-1510915933:961822..961926Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1575043694:961822..961926TCONS_00001041-exon-sc0000007-1575043694:961822..961926Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1491911889:969607..969670TCONS_00001041-exon-sc0000007-1491911889:969607..969670Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1510915933:969607..969670TCONS_00001041-exon-sc0000007-1510915933:969607..969670Clytia hemisphaericaexon
TCONS_00001041-exon-sc0000007-1575043694:969607..969670TCONS_00001041-exon-sc0000007-1575043694:969607..969670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:961159..969670 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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