TCONS_00001038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001038
Unique NameTCONS_00001038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001038 ID=TCONS_00001038|Name=TCONS_00001038|organism=Clytia hemisphaerica|type=transcript|length=639bp
CTTGAAATATGTTTTAAATGGCCTGGTTATATAAATGAGTTGTAAACGAA
AACGATGGTCCACTGAGAAACTTTCTAACAAAAGGGAATTTCATCATCAC
TACTATCAGAATGAAGACTTGTGTTCTTTTGCTTTTGGCTTTCTGTGTAG
CATTGGCTATTGCTGATTTTAGCTATGAAGaaaatgaCGATGGTTCTGGA
AGTGAAGAATTAACATGCCGTCAGAAATTACGTCAATGTTTGAAAGGTGC
TCGAGGAGGGTGGAAGCGTAACCAATGCCGCAATCGATTCAACTATTGTC
AATGGATGGAAAACGCTGGCAAAGTGGAAATCTACAACAAGTGTATAAAT
GATTGCAGTGACGCTCGCAACAGTTGCGAAGACGATCAATTCAAATGTAA
CATGGACGTATTCAAATGCAAAATGGCTTGTTAAAACTATATACTTTAGA
AAAATACGAATCTTTGATAAAACTGAAAAAAGTATCATCCTTATTAATAT
TGATATTAATTGGCCCAGCGTGCAGCGCAATCGGCCTTTAAAACACAACT
GGtcgaaaaaaattgactttgtcggggcctatgCCGTGCAATTATCAATC
GACGATTCCAGGCAAAAATTGAACTAcctgactttttat
Run BLAST on NCBI

protein sequence of TCONS_00001038-protein

>TCONS_00001038-protein ID=TCONS_00001038-protein|Name=TCONS_00001038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MKTCVLLLLAFCVALAIADFSYEENDDGSGSEELTCRQKLRQCLKGARGG
WKRNQCRNRFNYCQWMENAGKVEIYNKCINDCSDARNSCEDDQFKCNMDV
FKCKMAC
Run BLAST on NCBI

transcript from alignment at sc0000007:940875..942695+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001038 ID=TCONS_00001038|Name=TCONS_00001038|organism=Clytia hemisphaerica|type=transcript|length=1821bp|location=Sequence derived from alignment at sc0000007:940875..942695+ (Clytia hemisphaerica)
CTTGAAATATGTTTTAAATGGCCTGGTTATATAAATGAGTTGTAAACGAA
AACGATGGTCCACTGAGAAACTTTCTAACAAAAGGGAATTTCATCATCAC
TACTATCAGAATGAAGACTTGTGTTCTTTTGCTTTTGGCTTTCTGTGTAG
CATTGGCTATTGCTGATTTTAGCTATGAAGGtaactttatttttcaaaat
gatattcAAGCATACTAGATCTGCAAGAAATGGAGCATTTTATCTGATTG
ATTACTTTAAAAATATGCGAGATGTCTAAGGAAAAAAAATGGAGACATGT
TCGTGTAGGCGCGTTCAACGTGTTACcaatttcaatatatttttcttttt
cttagaaaatgaCGATGGTTCTGGAAGTGAAGAATTAACAGTAAGTCGTA
TTCACTTTGTCCTGCTTTTTAATGAATCGGTAGTTATAACTAGCCCTCTG
TACCAATGTAGGATATAGTCAAGTTTCGCGAGGAGAAAACGTACTTTTGA
CAGGAAACTATTTTTCTCAACTTGCAGTGCCGTCAGAAATTACGTCAATG
TTTGAAAGGTGCTCGAGGAGGGTGGAAGCGTAACCAATGCCGCAATCGAT
TCAACTATTGTCAATGGATGGAAAACGCTGGCAAAGTGGAAATCTACAAC
AAGTGTATAAATGATGTGAGTATGACGTAATGCTTAATTTTTTGCACTGG
GCactttaggcaaaaatgggCGCGGACCGTAAAgatcgggtttttcacct
ttcaaagtctctctaagggtcgcaaaaatcagaagAATTTAAATTAGTCT
TTCTAAGGGTCGGATAATTtccgatttttaaggaaatatttttgatttaa
agtgaaaaaattgtaacaaagtatctctaagggtagggaatttttcaaaa
atggaagaaaatttcccaaaaaagtctAAGAGTtaccttttcaaaaaaaa
tcagtctAAGGGTCGGTTCTTGGAGGTCCCATCCGTGCATACCCCTCACC
TGCCAACCCTACTACCCCCCTGGGTTTCTAGTTTAAaggtttaaaggttt
tatttttgcataagtgttcctgtttcatatcagacacatatcaggacagt
gtctccctGTTGTTATcttgtgctgaataaacaaaaaaaatttcctcttt
ttgaccaatcttgctccacatccgtatcaattcaatgtgaaaaagctttt
aaattaaaattgatgagtaagcaaacgatatcacttttatttaaagacaa
aaccttcaatttcaatatacttgcGATACCTGTATTTGTTAGAGGATGAA
AGCAACCAAATATTTGACCTTTTCGGTAGAGTTATTCCCAGTCCTATAAC
AATTGtaaagaatttattttcaaaaatatgtgaGCCTTTTTTTAGATTTG
AGGGGGCGTCAATAAACTTCTGCTACCTCAATACTCAATGAAGAACAAAA
GGAGGCAATGATCGCCAGGAAGGATTGATTAGTTCATTTTTTAGTTGACG
AGTTGTTAACATGTGTATTTCTTTCGTTTTTACAGTGCAGTGACGCTCGC
AACAGTTGCGAAGACGATCAATTCAAATGTAACATGGACGTATTCAAATG
CAAAATGGCTTGTTAAAACTATATACTTTAGAAAAATACGAATCTTTGAT
AAAACTGAAAAAAGTATCATCCTTATTAATATTGATATTAATTGGCCCAG
CGTGCAGCGCAATCGGCCTTTAAAACACAACTGGtcgaaaaaaattgact
ttgtcggggcctatgCCGTGCAATTATCAATCGACGATTCCAGGCAAAAA
TTGAACTAcctgactttttat

Coding sequence (CDS) from alignment at sc0000007:940875..942695+

>TCONS_00001038 ID=TCONS_00001038|Name=TCONS_00001038|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000007:940875..942695+ (Clytia hemisphaerica)
ATGAAGACTTGTGTTCTTTTGCTTTTGGCTTTCTGTGTAGCATTGGCTAT
TGCTGATTTTAGCTATGAAGaaaatgaCGATGGTTCTGGAAGTGAAGAAT
TAACATGCCGTCAGAAATTACGTCAATGTTTGAAAGGTGCTCGAGGAGGG
TGGAAGCGTAACCAATGCCGCAATCGATTCAACTATTGTCAATGGATGGA
AAACGCTGGCAAAGTGGAAATCTACAACAAGTGTATAAATGATTGCAGTG
ACGCTCGCAACAGTTGCGAAGACGATCAATTCAAATGTAACATGGACGTA
TTCAAATGCAAAATGGCTTGTTAAATGAAGACTTGTGTTCTTTTGCTTTT
GGCTTTCTGTGTAGCATTGGCTATTGCTGATTTTAGCTATGAAGaaaatg
aCGATGGTTCTGGAAGTGAAGAATTAACATGCCGTCAGAAATTACGTCAA
TGTTTGAAAGGTGCTCGAGGAGGGTGGAAGCGTAACCAATGCCGCAATCG
ATTCAACTATTGTCAATGGATGGAAAACGCTGGCAAAGTGGAAATCTACA
ACAAGTGTATAAATGATTGCAGTGACGCTCGCAACAGTTGCGAAGACGAT
CAATTCAAATGTAACATGGACGTATTCAAATGCAAAATGGCTTGTTAAAT
GAAGACTTGTGTTCTTTTGCTTTTGGCTTTCTGTGTAGCATTGGCTATTG
CTGATTTTAGCTATGAAGaaaatgaCGATGGTTCTGGAAGTGAAGAATTA
ACATGCCGTCAGAAATTACGTCAATGTTTGAAAGGTGCTCGAGGAGGGTG
GAAGCGTAACCAATGCCGCAATCGATTCAACTATTGTCAATGGATGGAAA
ACGCTGGCAAAGTGGAAATCTACAACAAGTGTATAAATGATTGCAGTGAC
GCTCGCAACAGTTGCGAAGACGATCAATTCAAATGTAACATGGACGTATT
CAAATGCAAAATGGCTTGTTAAATGAAGACTTGTGTTCTTTTGCTTTTGG
CTTTCTGTGTAGCATTGGCTATTGCTGATTTTAGCTATGAAGaaaatgaC
GATGGTTCTGGAAGTGAAGAATTAACATGCCGTCAGAAATTACGTCAATG
TTTGAAAGGTGCTCGAGGAGGGTGGAAGCGTAACCAATGCCGCAATCGAT
TCAACTATTGTCAATGGATGGAAAACGCTGGCAAAGTGGAAATCTACAAC
AAGTGTATAAATGATTGCAGTGACGCTCGCAACAGTTGCGAAGACGATCA
ATTCAAATGTAACATGGACGTATTCAAATGCAAAATGGCTTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000591XLOC_000591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001038-exon-sc0000007-1491911889:940875..941054TCONS_00001038-exon-sc0000007-1491911889:940875..941054Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1510915933:940875..941054TCONS_00001038-exon-sc0000007-1510915933:940875..941054Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1575043694:940875..941054TCONS_00001038-exon-sc0000007-1575043694:940875..941054Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1491911889:941230..941264TCONS_00001038-exon-sc0000007-1491911889:941230..941264Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1510915933:941230..941264TCONS_00001038-exon-sc0000007-1510915933:941230..941264Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1575043694:941230..941264TCONS_00001038-exon-sc0000007-1575043694:941230..941264Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1491911889:941402..941539TCONS_00001038-exon-sc0000007-1491911889:941402..941539Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1510915933:941402..941539TCONS_00001038-exon-sc0000007-1510915933:941402..941539Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1575043694:941402..941539TCONS_00001038-exon-sc0000007-1575043694:941402..941539Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1491911889:942410..942695TCONS_00001038-exon-sc0000007-1491911889:942410..942695Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1510915933:942410..942695TCONS_00001038-exon-sc0000007-1510915933:942410..942695Clytia hemisphaericaexon
TCONS_00001038-exon-sc0000007-1575043694:942410..942695TCONS_00001038-exon-sc0000007-1575043694:942410..942695Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001038-proteinTCONS_00001038-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:940875..942695 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247519	0.48274	0.280254	0.0913949	0	0.175845	0.106075	0	0.0695265	0	0	0.109898	35.7219	32.8237	0.843297	0.502771	40.0114	50.0251	137.085	90.1261	391.281	351.59	14.663	16.169	36.9393	39.2131	0.226265	0.120738	0	0.0933011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top