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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001038 ID=TCONS_00001038|Name=TCONS_00001038|organism=Clytia hemisphaerica|type=transcript|length=639bp CTTGAAATATGTTTTAAATGGCCTGGTTATATAAATGAGTTGTAAACGAA AACGATGGTCCACTGAGAAACTTTCTAACAAAAGGGAATTTCATCATCAC TACTATCAGAATGAAGACTTGTGTTCTTTTGCTTTTGGCTTTCTGTGTAG CATTGGCTATTGCTGATTTTAGCTATGAAGaaaatgaCGATGGTTCTGGA AGTGAAGAATTAACATGCCGTCAGAAATTACGTCAATGTTTGAAAGGTGC TCGAGGAGGGTGGAAGCGTAACCAATGCCGCAATCGATTCAACTATTGTC AATGGATGGAAAACGCTGGCAAAGTGGAAATCTACAACAAGTGTATAAAT GATTGCAGTGACGCTCGCAACAGTTGCGAAGACGATCAATTCAAATGTAA CATGGACGTATTCAAATGCAAAATGGCTTGTTAAAACTATATACTTTAGA AAAATACGAATCTTTGATAAAACTGAAAAAAGTATCATCCTTATTAATAT TGATATTAATTGGCCCAGCGTGCAGCGCAATCGGCCTTTAAAACACAACT GGtcgaaaaaaattgactttgtcggggcctatgCCGTGCAATTATCAATC GACGATTCCAGGCAAAAATTGAACTAcctgactttttat Run BLAST on NCBI protein sequence of TCONS_00001038-protein >TCONS_00001038-protein ID=TCONS_00001038-protein|Name=TCONS_00001038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MKTCVLLLLAFCVALAIADFSYEENDDGSGSEELTCRQKLRQCLKGARGG WKRNQCRNRFNYCQWMENAGKVEIYNKCINDCSDARNSCEDDQFKCNMDV FKCKMAC Run BLAST on NCBI transcript from alignment at sc0000007:940875..942695+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001038 ID=TCONS_00001038|Name=TCONS_00001038|organism=Clytia hemisphaerica|type=transcript|length=1821bp|location=Sequence derived from alignment at sc0000007:940875..942695+ (Clytia hemisphaerica) CTTGAAATATGTTTTAAATGGCCTGGTTATATAAATGAGTTGTAAACGAA
AACGATGGTCCACTGAGAAACTTTCTAACAAAAGGGAATTTCATCATCAC
TACTATCAGAATGAAGACTTGTGTTCTTTTGCTTTTGGCTTTCTGTGTAG
CATTGGCTATTGCTGATTTTAGCTATGAAGGtaactttatttttcaaaat
gatattcAAGCATACTAGATCTGCAAGAAATGGAGCATTTTATCTGATTG
ATTACTTTAAAAATATGCGAGATGTCTAAGGAAAAAAAATGGAGACATGT
TCGTGTAGGCGCGTTCAACGTGTTACcaatttcaatatatttttcttttt
cttagaaaatgaCGATGGTTCTGGAAGTGAAGAATTAACAGTAAGTCGTA
TTCACTTTGTCCTGCTTTTTAATGAATCGGTAGTTATAACTAGCCCTCTG
TACCAATGTAGGATATAGTCAAGTTTCGCGAGGAGAAAACGTACTTTTGA
CAGGAAACTATTTTTCTCAACTTGCAGTGCCGTCAGAAATTACGTCAATG
TTTGAAAGGTGCTCGAGGAGGGTGGAAGCGTAACCAATGCCGCAATCGAT
TCAACTATTGTCAATGGATGGAAAACGCTGGCAAAGTGGAAATCTACAAC
AAGTGTATAAATGATGTGAGTATGACGTAATGCTTAATTTTTTGCACTGG
GCactttaggcaaaaatgggCGCGGACCGTAAAgatcgggtttttcacct
ttcaaagtctctctaagggtcgcaaaaatcagaagAATTTAAATTAGTCT
TTCTAAGGGTCGGATAATTtccgatttttaaggaaatatttttgatttaa
agtgaaaaaattgtaacaaagtatctctaagggtagggaatttttcaaaa
atggaagaaaatttcccaaaaaagtctAAGAGTtaccttttcaaaaaaaa
tcagtctAAGGGTCGGTTCTTGGAGGTCCCATCCGTGCATACCCCTCACC
TGCCAACCCTACTACCCCCCTGGGTTTCTAGTTTAAaggtttaaaggttt
tatttttgcataagtgttcctgtttcatatcagacacatatcaggacagt
gtctccctGTTGTTATcttgtgctgaataaacaaaaaaaatttcctcttt
ttgaccaatcttgctccacatccgtatcaattcaatgtgaaaaagctttt
aaattaaaattgatgagtaagcaaacgatatcacttttatttaaagacaa
aaccttcaatttcaatatacttgcGATACCTGTATTTGTTAGAGGATGAA
AGCAACCAAATATTTGACCTTTTCGGTAGAGTTATTCCCAGTCCTATAAC
AATTGtaaagaatttattttcaaaaatatgtgaGCCTTTTTTTAGATTTG
AGGGGGCGTCAATAAACTTCTGCTACCTCAATACTCAATGAAGAACAAAA
GGAGGCAATGATCGCCAGGAAGGATTGATTAGTTCATTTTTTAGTTGACG
AGTTGTTAACATGTGTATTTCTTTCGTTTTTACAGTGCAGTGACGCTCGC
AACAGTTGCGAAGACGATCAATTCAAATGTAACATGGACGTATTCAAATG
CAAAATGGCTTGTTAAAACTATATACTTTAGAAAAATACGAATCTTTGAT
AAAACTGAAAAAAGTATCATCCTTATTAATATTGATATTAATTGGCCCAG
CGTGCAGCGCAATCGGCCTTTAAAACACAACTGGtcgaaaaaaattgact
ttgtcggggcctatgCCGTGCAATTATCAATCGACGATTCCAGGCAAAAA
TTGAACTAcctgactttttat Coding sequence (CDS) from alignment at sc0000007:940875..942695+ >TCONS_00001038 ID=TCONS_00001038|Name=TCONS_00001038|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000007:940875..942695+ (Clytia hemisphaerica) ATGAAGACTTGTGTTCTTTTGCTTTTGGCTTTCTGTGTAGCATTGGCTAT TGCTGATTTTAGCTATGAAGaaaatgaCGATGGTTCTGGAAGTGAAGAAT TAACATGCCGTCAGAAATTACGTCAATGTTTGAAAGGTGCTCGAGGAGGG TGGAAGCGTAACCAATGCCGCAATCGATTCAACTATTGTCAATGGATGGA AAACGCTGGCAAAGTGGAAATCTACAACAAGTGTATAAATGATTGCAGTG ACGCTCGCAACAGTTGCGAAGACGATCAATTCAAATGTAACATGGACGTA TTCAAATGCAAAATGGCTTGTTAAATGAAGACTTGTGTTCTTTTGCTTTT GGCTTTCTGTGTAGCATTGGCTATTGCTGATTTTAGCTATGAAGaaaatg aCGATGGTTCTGGAAGTGAAGAATTAACATGCCGTCAGAAATTACGTCAA TGTTTGAAAGGTGCTCGAGGAGGGTGGAAGCGTAACCAATGCCGCAATCG ATTCAACTATTGTCAATGGATGGAAAACGCTGGCAAAGTGGAAATCTACA ACAAGTGTATAAATGATTGCAGTGACGCTCGCAACAGTTGCGAAGACGAT CAATTCAAATGTAACATGGACGTATTCAAATGCAAAATGGCTTGTTAAAT GAAGACTTGTGTTCTTTTGCTTTTGGCTTTCTGTGTAGCATTGGCTATTG CTGATTTTAGCTATGAAGaaaatgaCGATGGTTCTGGAAGTGAAGAATTA ACATGCCGTCAGAAATTACGTCAATGTTTGAAAGGTGCTCGAGGAGGGTG GAAGCGTAACCAATGCCGCAATCGATTCAACTATTGTCAATGGATGGAAA ACGCTGGCAAAGTGGAAATCTACAACAAGTGTATAAATGATTGCAGTGAC GCTCGCAACAGTTGCGAAGACGATCAATTCAAATGTAACATGGACGTATT CAAATGCAAAATGGCTTGTTAAATGAAGACTTGTGTTCTTTTGCTTTTGG CTTTCTGTGTAGCATTGGCTATTGCTGATTTTAGCTATGAAGaaaatgaC GATGGTTCTGGAAGTGAAGAATTAACATGCCGTCAGAAATTACGTCAATG TTTGAAAGGTGCTCGAGGAGGGTGGAAGCGTAACCAATGCCGCAATCGAT TCAACTATTGTCAATGGATGGAAAACGCTGGCAAAGTGGAAATCTACAAC AAGTGTATAAATGATTGCAGTGACGCTCGCAACAGTTGCGAAGACGATCA ATTCAAATGTAACATGGACGTATTCAAATGCAAAATGGCTTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001038-exon-sc0000007-1491911889:940875..941054 | TCONS_00001038-exon-sc0000007-1491911889:940875..941054 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1510915933:940875..941054 | TCONS_00001038-exon-sc0000007-1510915933:940875..941054 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1575043694:940875..941054 | TCONS_00001038-exon-sc0000007-1575043694:940875..941054 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1491911889:941230..941264 | TCONS_00001038-exon-sc0000007-1491911889:941230..941264 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1510915933:941230..941264 | TCONS_00001038-exon-sc0000007-1510915933:941230..941264 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1575043694:941230..941264 | TCONS_00001038-exon-sc0000007-1575043694:941230..941264 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1491911889:941402..941539 | TCONS_00001038-exon-sc0000007-1491911889:941402..941539 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1510915933:941402..941539 | TCONS_00001038-exon-sc0000007-1510915933:941402..941539 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1575043694:941402..941539 | TCONS_00001038-exon-sc0000007-1575043694:941402..941539 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1491911889:942410..942695 | TCONS_00001038-exon-sc0000007-1491911889:942410..942695 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1510915933:942410..942695 | TCONS_00001038-exon-sc0000007-1510915933:942410..942695 | Clytia hemisphaerica | exon |
TCONS_00001038-exon-sc0000007-1575043694:942410..942695 | TCONS_00001038-exon-sc0000007-1575043694:942410..942695 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000007 | supercontig | sc0000007:940875..942695 + |
Blast
The following BLAST results are available for this feature:
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