TCONS_00001037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001037
Unique NameTCONS_00001037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001037 ID=TCONS_00001037|Name=TCONS_00001037|organism=Clytia hemisphaerica|type=transcript|length=1299bp
ACAAAAGCATCCATTCGCAAGTAATCCTGGACTGTTCAGAGCATTAAATA
CTAGTTTCATTTTAGTTCAATTTCCGACATATTTATGTTCCGGCTTCAAC
GCTATGGTTTACATTGTCAAAGATAAAAGGATCAAGAAATATTACGGAat
tatGTTATTACGGTGtagaatctgaaggtctttaaTCAGTAAAACGAGGA
AAGGTTTAGAACTATACAGTATAccaaaaattttcaatcgatcttGATGG
ATTAGCAAACAAAAAGCCAGCCTCTCATGTGACATATCGACCGAAAGTGG
ATTCGAATAATGTTGGCATGCCATGAGaagaattttggaaaattgtcatc
attttactttattgataaaaataagaGCCAATAGATTTATTCAAAATGTT
AGAATTGTTTAAACTTGGTTAAAAACTATTTACAATACTCCGCTCTTGAC
ATTTAAAATACCTCAAAGATTTGCAAATATATCTTTCTCTCCACCTCCAC
AGGAACTTCAAAGTAGATTTGATATTCGAAAGTTCATCTTCGTTAATATC
GTTCGATATCTCATCGTTCTTTACTTCTCGATTTTTGTTCAGTTTACAAC
AGAATAATTTGGCTGTGATGCATTTGAATAGTTTGTTTTGTGTATTGACA
TTCTGGTTATTGATGCAGATATCATAAATAAAATTACAACCTATTCCACA
AGCATGAGTATTGTCGAGTATATAGAAGATAACAGTGATCAAAATAAGCA
GTCTTTGTCGTTTTGGCTTCATCGTCGTAAATATTACCACATTTCACAGT
CAGCAGATCGACTCCAGTAAAAAGTCCTCAAACCTTTTTTTATCCAAAGG
GTAGCAATTTTATCAAAGTCGTTTATTTAGTTTGAACTCTACAATTTTTT
ATCACGAAAAGACTAGCCTTGACAGCTTCTTAACACCAAGTACATCACAA
CACATCATTTCACCTTTTGACTATGTATTTATCCTCCTTCTTGTTACAAG
TGCACTGTTTGTTTTTAAAGTATCTTGATATCCTTTTTGCATCACATCTA
TTTTGTTGCTCTGatgtgtttgtttatttttataccATCACTTAATAAAA
CGATCACTTTCCGGTTGCGAAAACGCAACTTCTCGCCATTCATATATGAA
GTGTTTCCTGTAACCACGTCAACCACACGCTTTTAGACGGTGGTTGGTCA
CGGTTTGTGGAAGAGCAGAATCAGCTTTTCTCGGAACGGGCCGGAAGAAT
TACACAAATAATAATGTGGACGAGATTTTGGAAATTAGGTCCTCTGTCG
Run BLAST on NCBI

transcript from alignment at sc0000007:893153..895691+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001037 ID=TCONS_00001037|Name=TCONS_00001037|organism=Clytia hemisphaerica|type=transcript|length=2539bp|location=Sequence derived from alignment at sc0000007:893153..895691+ (Clytia hemisphaerica)
ACAAAAGCATCCATTCGCAAGTAATCCTGGACTGTTCAGAGCATTAAATA CTAGTTTCATTTTAGTTCAATTTCCGACATATTTATGTTCCGGCTTCAAC GCTATGGTTTACATTGTCAAAGATAAAAGGATCAAGAAATATTACGGAat tatgttattattattattattattattatacagtaTACAAGTTCACAGGC CCGAGGTGGGCCTCTACGAACCGGTTTGATTACAATTCTAATTTGTTAAA TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNGCATTCCATGTAGGGATTGTTCTATAGTAGAATGACT TTGTTTGCGCTCCTCGAAGACCATCAGCAGCAAAGTTTGGAACGAATTCG TGATCGTGAAATCTGACTGGACGAGTTCTTTTAACTAGCTTGTCCCGAGT TGTTTTCGGATCATAAAAATGGATATGCTTATACATTTGGACCATATCGC AGAAAAGTCTTCTAAACTCAAGAGATGGAAGCTTGAGTCTTTGTAAACGC TCCTCATAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGTACGCTTCCTTGAGGAAT TCCACTTATGACATGGTCAGTAGTTGATTTAGCTGAGTTAACCTTGACTA GTTGCTTGCGGTCTGATAAAAATGCTATAATCCATTTTAACAGGTTATTA CGGTGtagaatctgaaggtctttaaTCAGTAAAACGAGGAAAGGTTTAGA ACTATACAGTATAccaaaaattttcaatcgatcttGATGGATTAGCAAAC AAAAAGCCAGCCTCTCATGTGACATATCGACCGAAAGTGGATTCGAATAA TGTTGGCATGCCATGAGaagaattttggaaaattgtcatcattttacttt attgataaaaataagaGCCAATAGATTTATTCAAAATGTTAGAATTGTTT AAACTTGGTTAAAAACTATTTACAATACTCCGCTCTTGACATTTAAAATA CCTCAAAGATTTGCAAATATATCTTTCTCTCCACCTCCACAGGAACTTCA AAGTAGATTTGATATTCGAAAGTTCATCTTCGTTAATATCGTTCGATATC TCATCGTTCTTTACTTCTCGATTTTTGTTCAGTTTACAACAGAATAATTT GGCTGTGATGCATTTGAATAGTTTGTTTTGTGTATTGACATTCTGGTTAT TGATGCAGATATCATAAATAAAATTACAACCTATTCCACAAGCATGAGTA TTGTCGAGTATATAGAAGATAACAGTGATCAAAATAAGCAGTCTTTGTCG TTTTGGCTTCATCGTCGTAAATATTACCACATTTCACAGTCAGCAGATCG ACTCCAGTAAAAAGTCCTCAAACCTTTTTTTATCCAAAGGGTAGCAATTT TATCAAAGTCGTTTATTTAGTTTGAACTCTACAATTTTTTATCACGAAAA GACTAGCCTTGACAGCTTCTTAACACCAAGTACATCACAACACATCATTT CACCTTTTGACTATGTATTTATCCTCCTTCTTGTTACAAGTGCACTGTTT GTTTTTAAAGTATCTTGATATCCTTTTTGCATCACATCTATTTTGTTGCT CTGatgtgtttgtttatttttataccATCACTTAATAAAACGATCACTTT CCGGTTGCGAAAACGCAACTTCTCGCCATTCATATATGAAGTGTTTCCTG TAACCACGTCAACCACACGCTTTTAGACGGTGGTTGGTCACGGTTTGTGG AAGAGCAGAATCAGCTTTTCTCGGAACGGGCCGGAAGAATTACACAAATA ATAATGTGGACGAGATTTTGGAAATTAGGTCCTCTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000590XLOC_000590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001037-exon-sc0000007-1491911889:893153..893305TCONS_00001037-exon-sc0000007-1491911889:893153..893305Clytia hemisphaericaexon
TCONS_00001037-exon-sc0000007-1510915933:893153..893305TCONS_00001037-exon-sc0000007-1510915933:893153..893305Clytia hemisphaericaexon
TCONS_00001037-exon-sc0000007-1575043694:893153..893305TCONS_00001037-exon-sc0000007-1575043694:893153..893305Clytia hemisphaericaexon
TCONS_00001037-exon-sc0000007-1491911889:894546..895691TCONS_00001037-exon-sc0000007-1491911889:894546..895691Clytia hemisphaericaexon
TCONS_00001037-exon-sc0000007-1510915933:894546..895691TCONS_00001037-exon-sc0000007-1510915933:894546..895691Clytia hemisphaericaexon
TCONS_00001037-exon-sc0000007-1575043694:894546..895691TCONS_00001037-exon-sc0000007-1575043694:894546..895691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:893153..895691 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0325484 0.0952194 0.0737059 0.0360549 4.6088 3.39914 10.6708 10.8909 6.06157 4.92621 4.15496 3.9669 2.70586 2.31549 7.44827 8.58815 1.34387 1.50264 1.00339 0.434473 1.95112 1.70383 2.87359 1.76429 2.23653 1.0604 0.312412 0.190523 1.37279 0.920171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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