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TCONS_00001020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001020
Unique NameTCONS_00001020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001020 ID=TCONS_00001020|Name=TCONS_00001020|organism=Clytia hemisphaerica|type=transcript|length=2579bp
AAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCTTGAGA
TAAATCATTGACTGTGACTGATACAACACAATACACATATACACCAATCA
ATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATCATGGG
CCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAAATATG
AAAGGGAAAAGCGTCAATATGAGAGGGAACAGGCATACAAGTCTGGTGCA
TTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCGTCCAT
TCATCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATG
ATACTGATGCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTCCTGCA
CCGGAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTACTCAGA
AGATGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCACAACTG
TGGTATTAGTTAGTGCTTCAAGTAGTGAAGCTGGCGAACCAGTAGATGAC
ATTGATGAAGTACCAAAAGAGAAACCTGTATTACCACTCACACCTGAATT
ACTGGCTGAACGAGAAGAATCTTCTGATGTTTCCCCAGCTGCTGATATGG
AGGATCGCCCACCTGCATATGATTGCCTAGTTCAAAACACAGAAGATACA
CCACCTCAATCACCACACTATGTTAATCTTCAAACTCTATCTTCTCAAAA
AGAACTTGATGATATTCCAATTGAAACTGAACCGGTTTCAGATACAGAGG
AAGATACAATCGAAGACCTCCCACCTCCACCAACTATTCCACCTCCAGCA
GCACCAATTCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAGGAGCC
TGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTGAAGGCTCCTACAG
AAGAGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTAAGGAA
CAGGCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAGGAGCC
AGCTGCTCTAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGAGCCAG
CTACCCCAGTCATTGAGGAGCCAGCTACTCCTGTCGTTGAGGAGCTAGCT
ACTCCTGTCGTTGAGGAGCTAGCTACCCCAGTCATTGAGGAGCCAGCTAC
CCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTACCC
CAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTACCCCA
GTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGT
CGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTCG
TTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTCGTT
GAGGAACCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTTGTTGA
GGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGG
AGCCAGCTGCCCCAGTTGTCGAGGAAACATCTATTGAGGAAACAAGTCTT
GATGAAGAACCAGCAGTTAATGATGAAAAAGAACCTGAAGTTGTTCTTCT
GAAAGCTGAAGAAGTGGGGGATGCTGATGAACTTCCTGTAATGAAAGTTG
AGGAAGTCGGACAGTCTGATGAAGCAGCTGATAAAACTGAGAACACTTTG
TTAGATGCAACGAATGTTTCTCCAATGCCAGAACCGGAAGAGTTCGACGA
TAACCCTACATATTTCATAAAAGTTACTGAGGCTAAATAAATCCAAACGA
acatttttaagtatttttaaaGCTTTACTATGCAAAATAGAAATTTCTAG
TTTTATACAGAGTATATATTGATAACTTCTTTAAAGTTTCAGGCCGTTTT
TTGAATTTGGAATGTATGAGAAAGTTATCGGTAGTTTtccttttcctgaa
tttttgtaacagagaattttcttttcatttgccATTTTTCGTGAATCAGT
TTTCGAGGTATTTGTAACAATGTTTTAGTATTTGTTTTTATCCTTTGAAC
TTTGTCATGGTAGGATGTTTTTAACATACCGTATcagtaaattatttttt
tagtatCATGTATTTATTAGTATTTTCATGTTCAGTTCCCTCGATTTTCG
CTAGTAGTTttcattttaattctttttccgatggttttttttggtccttt
tttTCAACAACGCAGAGGCTTTATTGGAGTCGAACAGAATATCGTCTCTA
TGCGagttcttgaaatttttttcaattactCTAACCTTGACCCCGAAACG
GGTTTTATCGAGGGTGAGTATTGTTTTACgttgatttttttaaagttagt
GATTCGCGAGAATTAGTCCTGTCGGTACAAAGGGATTTACGTATATTTTA
CATACGAAGCTCATTTGTAATACGGTATTTTCAGCTCATTTCTTTCAATT
AATATAAAAATCATGATCAATTTTGTACATCTTCGCCTATCGATCTCATT
GTTGATATTGTTTTTCCAGATGATTCGAT
Run BLAST on NCBI

transcript from alignment at sc0000007:745667..751470+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001020 ID=TCONS_00001020|Name=TCONS_00001020|organism=Clytia hemisphaerica|type=transcript|length=5804bp|location=Sequence derived from alignment at sc0000007:745667..751470+ (Clytia hemisphaerica)
AAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCTTGAGA TAAATCATTGACTGTGACTGATACAACACAATACACATATACACCAATCA ATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATCATGGG CCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAAATATG AAAGGGAAAAGCGTCAATATGAGAGGGAACAGGTAAATGACCtatgtttg aaaatttcaacatcaaaCTTCCAGACATTGGggtttttttattattctta ATATCATttcatatctttttaaatcATAGGTAATCTTATTATTGTAGTAT TGTGTGTTATGATTAaactttagaaatttttataaaagtaacTTTACTTT TATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACTTTTGAG ATTACACAACAAGACGCTTCCAaatgtattttgtttttattttattgtaa tAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGTTCAGTG TGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTTAAAGAG GCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATAGTACTT AATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACAATTTCT TTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaaaacatt ttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATGACACCA CATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTGTTTCCT TTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAAGTCTGG TGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCGG TTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataTTACGAT CACCATAAACGAGACAGCACTTCTAAAGCAATATAAAGggaaaataatag aaatttagaatataatttttttttctcattaaaaCATGACATTGCTTCCA GTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGCATGTT ACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCATCCTA CTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATACTGAT GCACCTAAAGTAGACTCTCCTGTCGAANCTTATTATTCTTAATATCATtt catatctttttaaatcATAGGTTATCTTATTATTGTAGTATTCTGTAGTA TTGTGTGTTATGATTAaactttagaaatttttataaaagtaacTTTACTT TTATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACTTTTGA GATTACACAACAAGACGCTTCCAaatgtattttgtttttattttattgta atAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGTTCAGT GTGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTTAAAGA GGCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATAGTACT TAATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACAATTTC TTTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaaaacat tttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATGACACC ACATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTGTTTCC TTTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAAGTCTG GTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCG GTTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataTTACGA TCACCAAAAACGAGACAGCACTTTTAAAGCAATATAAAGggaaaataata gaaatttagaatataaattttttttctcattaaaaCATGACATGCTTCCA GTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGCATGTT ACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCATCCTA CTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATACTGAT GCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTCCTGCACCGGAAAG TGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTACTCAGAAGATGTCA AGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCACAACTGTGGTATTA GTTAGTGCTTCAAGTAGTGAAGCTGGTGAACCAGTAGATGACATTGATGA AGTACCAAAAGAGAAACCTGTATTACCACTCACACCTGAATTACTGGCTG AACGAGAAGAATCTTCTGATGTTTCCCAAGCTGCTGATATGGAGGATCGC CCACCTGCATATGATTGCCTAGTTCAAAACACAGAAGATACACCACCTCA ATCACCACACTATGTTAATCTTCAAACTCTATCTTCTCAAAAAGAACTTG ATGATATTCCAATTGAAACTGAACCGGTTTCAGATACAGAGGAAGATACA ATCGAAGACCTCCCACCTCCACCAACTATTCCACCTCCAGCAGCACCAAT TCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAGGAGCCTGCTCTTC CAGTTGTTGAAGAAGTTGTTCCAGTAGTAAAGGCTCCTACAGAAGAGGCT GCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTAAGGAACAGGCTGC CCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAGGAGCCAGCTGCTC TAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGAGCCAGCTACCCCA GTCATTGAGGAGCCAGGTACTCCTGTCGTTGAGGAGCTAGCTACTCCTGT CGTTGAGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCTCA TTAAAACATGACATGCTTCCAGTTATTTTCTGTCTGTTCTGCCAGATGCT TTCTACACAACTTTGCATGTTACATTTCATTAACTGATTCTCGTGAATTG ATTTTTAGTCCATTCATCCTACTCAATCGTTGTATCCTGACCTCAAAGAA CTGGAGCAAGATGATACTGATGCACCTAAAGTAGACTCTCCTGTCGAAAC TAGCACTCCTGCACCGGAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAG AAACTTACTCAGAAGATGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCG GAAAGCACAACTGTGGTATTAGTTAGTGCTTCAAGTAGTGAAGCTGGCGA ACCAGTAGATGACATTGATGAAGTACCAAAAGAGAAACCTGTATTACCAC TCACACCTGAATTACTGGCTGAACGAGAAGAATCTTCTGATGTTTCCCCA GCTGCTGATATGGAGGATCGCCCACCTGCATATGATTGCCTAGTTCAAAA CACAGAAGATACACCACCTCAATCACCACACTATGTTAATCTTCAAACTC TATCTTCTCAAAAAGAACTTGATGATATTCCAATTGAAACTGAACCGGTT TCAGATACAGAGGAAGATACAATCGAAGACCTCCCACCTCCACCAACTAT TCCACCTCCAGCAGCACCAATTCCTTCAACCATCCTTGAAGAAGAAGAAC CTACTGAGGAGCCTGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTG AAGGCTCCTACAGAAGAGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCC AGTTGTTAAGGAACAGGCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAG TTGTTGAGGAGCCAGCTGCTCTAATTGTCGAAGAGACAACCACCCCAGTT GTTGAGGAGCCAGCTACCCCAGTCATTGAGGAGCCAGCTACTCCTGTCGT TGAGGAGCTAGCTACTCCTGTCGTTGAGGAGCTAGCTACCCCAGTCATTG AGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAG GAACCAACTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGA ACCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAAC CAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCA GCTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAAGCAGC TACCCCAGTTGTTGAGGAACCAGCTACCCCAGTTATTGAGGAGCCAGCCA CCCCGGTTATTGAGGAGCCAGCCACCCCGGTTGTTGAGGAGCCAGCCACC CCGGTTGTTGAGGAGCCAGCTACCCCAGTCGTTGAGGAGCCAGCTACCCC AGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAGCCAGCTACCCCAG TTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAGCCAGCTACCCCAGTC GTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGT TGAGGAGCCAACTACCCCAGTCGTTGAGGAACCAACTACCCCAGTCGTTG AGGAGCCAACTACCCCAGTTGTTGAGGAGCCAACTACCCCAGTCGTTGAG GAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTGCCCCAGTTGTCGAGGA AACATCTATTGAGGAAACAAGTCTTGATGAAGAACCAGCAGTTAATGATG AAAAAGAACCTGAAGTTGTTCTTCTGAAAGCTGAAGAAGTGGGGGATGCT GATGAACTTCCTGTAATGAAAGTTGAGGAAGTCGGACAGTCTGATGAAGC AGCTGATAAAACTGAGAACACTTTGTTAGATGCAACGAATGTTTCTCCAA TGCCAGAACCGGAAGAGTTCGACGATAACCCTACATATTTCATAAAAGTT ACTGAGGCTAAATAAATCCAAACGAacatttttaagtatttttaaaGCTT TACTATGCAAAATAGAAATTTCTAGTTTTATACAGAGTATATATTGATAA CTTCTTTAAAGTTTCAGGCCGTTTTTTGAATTTGGAATGTATGAGAAAGT TATCGGTAGTTTtccttttcctgaatttttgtaacagagaattttctttt catttgccATTTTTCGTGAATCAGTTTTCGAGGTATTTGTAACAATGTTT TAGTATTTGTTTTTATCCTTTGAACTTTGTCATGGTAGGATGTTTTTAAC ATACCGTATcagtaaattatttttttagtatCATGTATTTATTAGTATTT TCATGTTCAGTTCCCTCGATTTTCGCTAGTAGTTttcattttaattcttt ttccgatggttttttttggtccttttttTCAACAACGCAGAGGCTTTATT GGAGTCGAACAGAATATCGTCTCTATGCGagttcttgaaatttttttcaa ttactCTAACCTTGACCCCGAAACGGGTTTTATCGAGGGTGAGTATTGTT TTACgttgatttttttaaagttagtGATTCGCGAGAATTAGTCCTGTCGG TACAAAGGGATTTACGTATATTTTACATACGAAGCTCATTTGTAATACGG TATTTTCAGCTCATTTCTTTCAATTAATATAAAAATCATGATCAATTTTG TACATCTTCGCCTATCGATCTCATTGTTGATATTGTTTTTCCAGATGATT CGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000585XLOC_000585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001020-exon-sc0000007-1491911889:745667..745898TCONS_00001020-exon-sc0000007-1491911889:745667..745898Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1510915933:745667..745898TCONS_00001020-exon-sc0000007-1510915933:745667..745898Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1575043694:745667..745898TCONS_00001020-exon-sc0000007-1575043694:745667..745898Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1491911889:747554..747616TCONS_00001020-exon-sc0000007-1491911889:747554..747616Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1510915933:747554..747616TCONS_00001020-exon-sc0000007-1510915933:747554..747616Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1575043694:747554..747616TCONS_00001020-exon-sc0000007-1575043694:747554..747616Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1491911889:748875..750011TCONS_00001020-exon-sc0000007-1491911889:748875..750011Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1510915933:748875..750011TCONS_00001020-exon-sc0000007-1510915933:748875..750011Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1575043694:748875..750011TCONS_00001020-exon-sc0000007-1575043694:748875..750011Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1491911889:750324..751470TCONS_00001020-exon-sc0000007-1491911889:750324..751470Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1510915933:750324..751470TCONS_00001020-exon-sc0000007-1510915933:750324..751470Clytia hemisphaericaexon
TCONS_00001020-exon-sc0000007-1575043694:750324..751470TCONS_00001020-exon-sc0000007-1575043694:750324..751470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:745667..751470 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283284 0 0 0.116426 6.15112 2.5909 6.73219 2.67223 5.10883 2.32627 1.49321 2.43882 1.65277 3.93928 0.739647 1.19121 1.68942 0.594509 0.66443 0.548646 0.232336 0.738402 0.595042 1.40604 24.9729 22.228 0.479063 1.09954 0.594069 0.629233
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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