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TCONS_00001018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001018
Unique NameTCONS_00001018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001018 ID=TCONS_00001018|Name=TCONS_00001018|organism=Clytia hemisphaerica|type=transcript|length=2778bp
aatagctcatgaaaaaaaataaaagcagTCTATCATGCTGTGAACTGTGT
ACAAGAAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCT
TGAGATAAATCATTGACTGTGACTGATACAACACAATACACATATACACC
AATCAATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATC
ATGGGCCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAA
ATATGAAAGGGAAAAGCGTCAATATGAGAGGGAACAGGCATACAAGTCTG
GTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCG
TCCATTCATCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCA
AGATGATACTGATGCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTC
CTGCACCGGAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTAC
TCAGAAGATGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCAC
AACTGTGGTATTAGTTAGTGCTTCAAGTAGTGAAGCTGGCGAACCAGTAG
ATGACATTGATGAAGTACCAAAAGAGAAACCTGTATTACCACTCACACCT
GAATTACTGGCTGAACGAGAAGAATCTTCTGATGTTTCCCCAGCTGCTGA
TATGGAGGATCGCCCACCTGCATATGATTGCCTAGTTCAAAACACAGAAG
ATACACCACCTCAATCACCACACTATGTTAATCTTCAAACTCTATCTTCT
CAAAAAGAACTTGATGATATTCCAATTGAAACTGAACCGGTTTCAGATAC
AGAGGAAGATACAATCGAAGACCTCCCACCTCCACCAACTATTCCACCTC
CAGCAGCACCAATTCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAG
GAGCCTGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTGAAGGCTCC
TACAGAAGAGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTA
AGGAACAGGCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAG
GAGCCAGCTGCTCTAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGA
GCCAGCTACCCCAGTCATTGAGGAGCCAGCTACTCCTGTCGTTGAGGAGC
TAGCTACTCCTGTCGTTGAGGAGCTAGCTACCCCAGTCATTGAGGAGCCA
GCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAAC
TACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTA
CCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACC
CCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCC
AGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAGCTACCCCAG
TTGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTT
GTTGAGGAGCCAGCTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGT
TGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTG
AGGAACCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTTGTTGAG
GAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGA
GCCAGCTGCCCCAGTTGTCGAGGAAACATCTATTGAGGAAACAAGTCTTG
ATGAAGAACCAGCAGTTAATGATGAAAAAGAACCTGAAGTTGTTCTTCTG
AAAGCTGAAGAAGTGGGGGATGCTGATGAACTTCCTGTAATGAAAGTTGA
GGAAGTCGGACAGTCTGATGAAGCAGCTGATAAAACTGAGAACACTTTGT
TAGATGCAACGAATGTTTCTCCAATGCCAGAACCGGAAGAGTTCGACGAT
AACCCTACATATTTCATAAAAGTTACTGAGGCTAAATAAATCCAAACGAa
catttttaagtatttttaaaGCTTTACTATGCAAAATAGAAATTTCTAGT
TTTATACAGAGTATATATTGATAACTTCTTTAAAGTTTCAGGCCGTTTTT
TGAATTTGGAATGTATGAGAAAGTTATCGGTAGTTTtccttttcctgaat
ttttgtaacagagaattttcttttcatttgccATTTTTCGTGAATCAGTT
TTCGAGGTATTTGTAACAATGTTTTAGTATTTGTTTTTATCCTTTGAACT
TTGTCATGGTAGGATGTTTTTAACATACCGTATcagtaaattattttttt
agtatCATGTATTTATTAGTATTTTCATGTTCAGTTCCCTCGATTTTCGC
TAGTAGTTttcattttaattctttttccgatggttttttttggtcctttt
ttTCAACAACGCAGAGGCTTTATTGGAGTCGAACAGAATATCGTCTCTAT
GCGagttcttgaaatttttttcaattactCTAACCTTGACCCCGAAACGG
GTTTTATCGAGGGTGAGTATTGTTTTACgttgatttttttaaagttagtG
ATTCGCGAGAATTAGTCCTGTCGGTACAAAGGGATTTACGTATATTTTAC
ATACGAAGCTCATTTGTAATACGGTATTTTCAGCTCATTTCTTTCAATTA
ATATAAAAATCATGATCAATTTTGTACATCTTCGCCTATCGATCTCATTG
TTGATATTGTTTTTCCAGATGATTCGAT
Run BLAST on NCBI

transcript from alignment at sc0000007:745612..751470+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001018 ID=TCONS_00001018|Name=TCONS_00001018|organism=Clytia hemisphaerica|type=transcript|length=5859bp|location=Sequence derived from alignment at sc0000007:745612..751470+ (Clytia hemisphaerica)
aatagctcatgaaaaaaaataaaagcagTCTATCATGCTGTGAACTGTGT ACAAGAAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCT TGAGATAAATCATTGACTGTGACTGATACAACACAATACACATATACACC AATCAATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATC ATGGGCCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAA ATATGAAAGGGAAAAGCGTCAATATGAGAGGGAACAGGTAAATGACCtat gtttgaaaatttcaacatcaaaCTTCCAGACATTGGggtttttttattat tcttaATATCATttcatatctttttaaatcATAGGTAATCTTATTATTGT AGTATTGTGTGTTATGATTAaactttagaaatttttataaaagtaacTTT ACTTTTATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACTT TTGAGATTACACAACAAGACGCTTCCAaatgtattttgtttttattttat tgtaatAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGTT CAGTGTGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTTA AAGAGGCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATAG TACTTAATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACAA TTTCTTTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaaa acattttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATGA CACCACATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTGT TTCCTTTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAAG TCTGGTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGT TTCGGTTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataTT ACGATCACCATAAACGAGACAGCACTTCTAAAGCAATATAAAGggaaaat aatagaaatttagaatataatttttttttctcattaaaaCATGACATTGC TTCCAGTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGC ATGTTACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCA TCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATA CTGATGCACCTAAAGTAGACTCTCCTGTCGAANCTTATTATTCTTAATAT CATttcatatctttttaaatcATAGGTTATCTTATTATTGTAGTATTCTG TAGTATTGTGTGTTATGATTAaactttagaaatttttataaaagtaacTT TACTTTTATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACT TTTGAGATTACACAACAAGACGCTTCCAaatgtattttgtttttatttta ttgtaatAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGT TCAGTGTGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTT AAAGAGGCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATA GTACTTAATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACA ATTTCTTTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaa aacattttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATG ACACCACATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTG TTTCCTTTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAA GTCTGGTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATG TTTCGGTTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataT TACGATCACCAAAAACGAGACAGCACTTTTAAAGCAATATAAAGggaaaa taatagaaatttagaatataaattttttttctcattaaaaCATGACATGC TTCCAGTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGC ATGTTACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCA TCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATA CTGATGCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTCCTGCACCG GAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTACTCAGAAGA TGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCACAACTGTGG TATTAGTTAGTGCTTCAAGTAGTGAAGCTGGTGAACCAGTAGATGACATT GATGAAGTACCAAAAGAGAAACCTGTATTACCACTCACACCTGAATTACT GGCTGAACGAGAAGAATCTTCTGATGTTTCCCAAGCTGCTGATATGGAGG ATCGCCCACCTGCATATGATTGCCTAGTTCAAAACACAGAAGATACACCA CCTCAATCACCACACTATGTTAATCTTCAAACTCTATCTTCTCAAAAAGA ACTTGATGATATTCCAATTGAAACTGAACCGGTTTCAGATACAGAGGAAG ATACAATCGAAGACCTCCCACCTCCACCAACTATTCCACCTCCAGCAGCA CCAATTCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAGGAGCCTGC TCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTAAAGGCTCCTACAGAAG AGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTAAGGAACAG GCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAGGAGCCAGC TGCTCTAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGAGCCAGCTA CCCCAGTCATTGAGGAGCCAGGTACTCCTGTCGTTGAGGAGCTAGCTACT CCTGTCGTTGAGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT TCTCATTAAAACATGACATGCTTCCAGTTATTTTCTGTCTGTTCTGCCAG ATGCTTTCTACACAACTTTGCATGTTACATTTCATTAACTGATTCTCGTG AATTGATTTTTAGTCCATTCATCCTACTCAATCGTTGTATCCTGACCTCA AAGAACTGGAGCAAGATGATACTGATGCACCTAAAGTAGACTCTCCTGTC GAAACTAGCACTCCTGCACCGGAAAGTGATGAAGAGAGTGTCTCTGTTTT AACAGAAACTTACTCAGAAGATGTCAAGGAAGCCAGTATTGTTGCAGAAC CAGCGGAAAGCACAACTGTGGTATTAGTTAGTGCTTCAAGTAGTGAAGCT GGCGAACCAGTAGATGACATTGATGAAGTACCAAAAGAGAAACCTGTATT ACCACTCACACCTGAATTACTGGCTGAACGAGAAGAATCTTCTGATGTTT CCCCAGCTGCTGATATGGAGGATCGCCCACCTGCATATGATTGCCTAGTT CAAAACACAGAAGATACACCACCTCAATCACCACACTATGTTAATCTTCA AACTCTATCTTCTCAAAAAGAACTTGATGATATTCCAATTGAAACTGAAC CGGTTTCAGATACAGAGGAAGATACAATCGAAGACCTCCCACCTCCACCA ACTATTCCACCTCCAGCAGCACCAATTCCTTCAACCATCCTTGAAGAAGA AGAACCTACTGAGGAGCCTGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAG TAGTGAAGGCTCCTACAGAAGAGGCTGCCCCAGTCAGTGAGGAACAGGCT GCCCCAGTTGTTAAGGAACAGGCTGCCCCAGTCATTGAGGAATTGGCTGC CCCAGTTGTTGAGGAGCCAGCTGCTCTAATTGTCGAAGAGACAACCACCC CAGTTGTTGAGGAGCCAGCTACCCCAGTCATTGAGGAGCCAGCTACTCCT GTCGTTGAGGAGCTAGCTACTCCTGTCGTTGAGGAGCTAGCTACCCCAGT CATTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTG TTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTT GAGGAACCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGA GGAACCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGG AGCCAGCTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAA GCAGCTACCCCAGTTGTTGAGGAACCAGCTACCCCAGTTATTGAGGAGCC AGCCACCCCGGTTATTGAGGAGCCAGCCACCCCGGTTGTTGAGGAGCCAG CCACCCCGGTTGTTGAGGAGCCAGCTACCCCAGTCGTTGAGGAGCCAGCT ACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAGCCAGCTAC CCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAGCCAGCTACCC CAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCA GTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAACCAACTACCCCAGT CGTTGAGGAGCCAACTACCCCAGTTGTTGAGGAGCCAACTACCCCAGTCG TTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTGCCCCAGTTGTC GAGGAAACATCTATTGAGGAAACAAGTCTTGATGAAGAACCAGCAGTTAA TGATGAAAAAGAACCTGAAGTTGTTCTTCTGAAAGCTGAAGAAGTGGGGG ATGCTGATGAACTTCCTGTAATGAAAGTTGAGGAAGTCGGACAGTCTGAT GAAGCAGCTGATAAAACTGAGAACACTTTGTTAGATGCAACGAATGTTTC TCCAATGCCAGAACCGGAAGAGTTCGACGATAACCCTACATATTTCATAA AAGTTACTGAGGCTAAATAAATCCAAACGAacatttttaagtatttttaa aGCTTTACTATGCAAAATAGAAATTTCTAGTTTTATACAGAGTATATATT GATAACTTCTTTAAAGTTTCAGGCCGTTTTTTGAATTTGGAATGTATGAG AAAGTTATCGGTAGTTTtccttttcctgaatttttgtaacagagaatttt cttttcatttgccATTTTTCGTGAATCAGTTTTCGAGGTATTTGTAACAA TGTTTTAGTATTTGTTTTTATCCTTTGAACTTTGTCATGGTAGGATGTTT TTAACATACCGTATcagtaaattatttttttagtatCATGTATTTATTAG TATTTTCATGTTCAGTTCCCTCGATTTTCGCTAGTAGTTttcattttaat tctttttccgatggttttttttggtccttttttTCAACAACGCAGAGGCT TTATTGGAGTCGAACAGAATATCGTCTCTATGCGagttcttgaaattttt ttcaattactCTAACCTTGACCCCGAAACGGGTTTTATCGAGGGTGAGTA TTGTTTTACgttgatttttttaaagttagtGATTCGCGAGAATTAGTCCT GTCGGTACAAAGGGATTTACGTATATTTTACATACGAAGCTCATTTGTAA TACGGTATTTTCAGCTCATTTCTTTCAATTAATATAAAAATCATGATCAA TTTTGTACATCTTCGCCTATCGATCTCATTGTTGATATTGTTTTTCCAGA TGATTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000585XLOC_000585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001018-exon-sc0000007-1491911889:745612..745898TCONS_00001018-exon-sc0000007-1491911889:745612..745898Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1510915933:745612..745898TCONS_00001018-exon-sc0000007-1510915933:745612..745898Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1575043694:745612..745898TCONS_00001018-exon-sc0000007-1575043694:745612..745898Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1491911889:747554..747616TCONS_00001018-exon-sc0000007-1491911889:747554..747616Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1510915933:747554..747616TCONS_00001018-exon-sc0000007-1510915933:747554..747616Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1575043694:747554..747616TCONS_00001018-exon-sc0000007-1575043694:747554..747616Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1491911889:748875..750011TCONS_00001018-exon-sc0000007-1491911889:748875..750011Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1510915933:748875..750011TCONS_00001018-exon-sc0000007-1510915933:748875..750011Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1575043694:748875..750011TCONS_00001018-exon-sc0000007-1575043694:748875..750011Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1491911889:750180..751470TCONS_00001018-exon-sc0000007-1491911889:750180..751470Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1510915933:750180..751470TCONS_00001018-exon-sc0000007-1510915933:750180..751470Clytia hemisphaericaexon
TCONS_00001018-exon-sc0000007-1575043694:750180..751470TCONS_00001018-exon-sc0000007-1575043694:750180..751470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:745612..751470 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.78667 4.2291 2.2317 1.5353 15.4915 9.15946 12.3554 16.9519 12.1768 19.0798 11.2483 8.63226 13.4897 15.6201 28.3585 35.0536 35.1497 26.9431 13.8777 16.6369 21.6679 21.7802 25.3421 31.3327 10.5777 8.52666 45.8722 47.6397 28.8247 24.4613
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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