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TCONS_00001007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001007
Unique NameTCONS_00001007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001007 ID=TCONS_00001007|Name=TCONS_00001007|organism=Clytia hemisphaerica|type=transcript|length=1685bp
GTTTGCTTTACGAACAAATAGACATTTCTTATACTTTTATTCATACTAGC
TTAAATTTGAAACACAGCTTTAGTTCAGCAAACGTTATAGCAGATGATGT
TTCCAGCCCAGACGGAGCGAAGGCGATCCCATACCTTCTCTGAAGGTGTC
TTTGACGAAGCGGTCAAGGCCCATGGAGATCTACTTTCTCCTGAAACCGC
CAAGAAGAATGATCTGTGTCGACAATACAGTGAGGGATCACCAGCTTCAT
TGAAAAGGACAGACACCCGATCTCCtatccttcaaaaacttcataAAAAA
TTCTTCAGTCATGAGGCGAACAGTCCGACCAATTCACTGGAAGATTTGAC
ACCTCGATCACGTTCTGGTACTGGTAATTCAATCGAACGCTTCTTCAAGA
GAGATGATAATTGTGAGTTTGAGATTCCGGTACTGACCCCACCAAGAAGT
CCACTAACCTCGCCCAATCAACGATCTTTGGGTGGAAGTCCTGTCAACGG
TATCGGCGAACTAGATATCGATCTCTACAAGAATTACTCGTCAGAATCAG
ATGATAGTATTGTGAATGAGGAACCTCGTCGCATGAAACACGAGAAACTG
AAAACGAAAAGTTCGTTAGCTGATAGCCTATCACAAGATGGGTTGGTGTG
CTCGTTCGAAAAATTGCGTTGTTTCCAGGGTGATGAAGAGGAACGAATAA
AAACGAACTCTGTCGGCAGTATCACTCTCTCTTTTCGANGAAGAGGAACG
AATAAAAACGAACTCTGTCGGTAGTATTACTCTCTCCTTTCGGTATGTAC
GTAAAGAACATCACCTATTGATCAAACTCATTGATATTAACTTGAACTAT
AAACCTTCATTCCAAGTGCGGGAGACACATTGGACAATACAACCTTATCT
CGTGATCGACACGTTTCGAGACTCACGTTCGCCCACTGAGAAAGGgaaat
ttcatttgtttcaCAAGCACCATCAACCATATATAATGACTAAAGATGAA
ACATGTGAACtgaacattaaaaataaaacgaGTGAAGGACACTTACTGAA
AGTTGTGTTATATGATGGGGATATTTTGAACAAAGACTTAGCAGTAGGGA
CAGTACACTTTCAGTTGTCCAACCTTCTTACCATGGATGGAAGTGAAATG
ATTGTCACCAAAGACCTTGCCATGTTCCATGAGACATACCATCGCCAAGG
AGGTACTCTTACATCCACATTGCAATGGCATTCAAGAGCTATGTTGTTTA
AAATGCACATCGAATCCATCTCTTTCGACAAAgactttcaaaatatcaaa
gAATTGTTCATCAAGACGACGATATACGTTGGTAATGAAGAATACGTAGA
ATATTGCACCGATTCTTTTTCCGCCTCTAAAGACCTTCAGGTCGAACAAA
CATACAACATTGAACTGACACCTGATAAAATACGAAATATGTTTATAGTG
ATACAAATATTCGAGAAACACTTAATCGGAAGTATTTCTTTACATCGTAC
CGTTATTGGACCTTATATGCGACCCACATTGAAAGATGAAACGGTTTCAG
CGTGGGAGAAAATGATCGTGTGTCCGGGAGAGGAGGTGAAATGTATTTGT
AATTTGTATCATTGATGAGAGTCTAAGAAGCCTTTGTTTTTGTTAAAGCA
CAAGCATTCGAGTATCTTCgcaaagagcccccccc
Run BLAST on NCBI

protein sequence of TCONS_00001007-protein

>TCONS_00001007-protein ID=TCONS_00001007-protein|Name=TCONS_00001007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MMFPAQTERRRSHTFSEGVFDEAVKAHGDLLSPETAKKNDLCRQYSEGSP
ASLKRTDTRSPILQKLHKKFFSHEANSPTNSLEDLTPRSRSGTGNSIERF
FKRDDNCEFEIPVLTPPRSPLTSPNQRSLGGSPVNGIGELDIDLYKNYSS
ESDDSIVNEEPRRMKHEKLKTKSSLADSLSQDGLVCSFEKLRCFQGDEEE
RIKTNSVGSITLSFRXRGTNKNELCR
Run BLAST on NCBI

transcript from alignment at sc0000007:645945..649312+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001007 ID=TCONS_00001007|Name=TCONS_00001007|organism=Clytia hemisphaerica|type=transcript|length=3368bp|location=Sequence derived from alignment at sc0000007:645945..649312+ (Clytia hemisphaerica)
GTTTGCTTTACGAACAAATAGACATTTCTTATACTTTTATTCATACTAGC TTAAATTTGAAACACAGCTTTAGTTCAGCAAACGTTATAGCAGATGATGT TTCCAGCCCAGACGGAGCGAAGGCGATCCCATACCTTCTCTGAAGGTGTC TTTGACGAAGCGGTCAAGGCCCATGGAGATCTACTTTCTCCTGAAACCGC CAAGAAGAATGATCTGTGTCGACAATACAGTGAGGGATCACCAGCTTCAT TGAAAAGGACAGACACCCGATCTCCtatccttcaaaaacttcataAAAAA TTCTTCAGTCATGGTTagttcaaattttctttaaacaGTTTGTACataaa tctttgaaattttcgAGGAGATCTTCCGGTTGCCTTTTCGAATAGAGGTA AGCTTTTGTTATGTGTTATGACACTAGTTTTTCGGGTTTATTTTGTCAGC TGATGCTTCCCACGTGTGAATCTGTTTTGGTGTTGGAGTTGTACTTTTGA TACTTTTCCATCTGAATTTACAGAGGCGAACAGTCCGACCAATTCACTGG AAGATTTGACACCTCGATCACGTTCTGGTACTGGTAATTCAATCGAACGC TTCTTCAAGAGAGATGGTTTGTCATTACTCCTTAAGCCAAAGCGTCAACC CCCCAGACATTTTGTGGGGGGGGGTGACacccaaaaaaatgcaaacgaAA ACTGGGAGCTAAAATACAGCCAAATACTCGGGGGCTGACATGTTTGGGCG GGGCTGgacttttaattttatttcgtctattatttttctttatatcacca catttttatccaaaaaccatttagtagggggaattttgttcgatttttta gaatcgctcgactgttttgttagaagcacttgttatacatttttggaaag ctaaggggtaggggaatcgaaattactatgtttccaattttttttcggac actttggtgtgattttcggacaaatataacggtctcaggcaaaaattata gggttaaaaattaatgaaaattttagctcgagaaaacggagacttgttgt atatttttggaaagctctcaaaaaattaagattagagatatattgcaagt ataggtgatttctatACCTAACTCGacatattaacccttgaaaaccgtgt ttttcagccagaaacagctattttgtccagtttttgcgctttttgaagct caatatctcgagttaaaATCCTAACAGTAACACATGTTTGCGAGGCTGTA TTTTCATTAGAGCTGTCTGTATAATGTAATAAGCTTATAATAAATATTTC TTTCGCTTAAGTGATAAGTAACGTTCACAACAAAGCTAAATGTTCAACCT TTCTAAGAATGACGTATGTTGCTCGTAGCtgaaaaaaatggtgaaaattt tCCTTGGGATAAATGTGATTACAAGCACGTTGAACATTTACAGCTCCCTC GGGTACCTGTTAATAATAGTTGACCGCTTGTAattaaatattcaattttc aaaagtctTTGAACTTTTTTGTAGATAATTGTGAGTTTGAGATTCCGGTA CTGACCCCACCAAGAAGTCCACTAACCTCGCCCAATCAACGATCTTTGGG TGGAAGTCCTGTCAACGGTATCGGCGAACTAGATATCGATCTCTACAAGA ATTACTCGTCAGAATCAGATGATAGTATTGTGAATGAGGAACCTCGTCGC ATGAAACACGAGAAACTGAAAACGAAAAGTTCGTTAGCTGATAGCCTATC ACAAGATGGGTTGGTGTGCTCGTTCGAAAAATTGCGTTGTTTCCAGGGTG ATGAAGAGGAACGAATAAAAACGAACTCTGTCGGCAGTATCACTCTCTCT TTTCGANGAAGAGGAACGAATAAAAACGAACTCTGTCGGTAGTATTACTC TCTCCTTTCGGTATGTACGTAAAGAACATCACCTATTGATCAAACTCATT GATATTAACTTGAACTATAAACCTTCATTCCAAGTGCGGGAGACACATTG GACAATACAACCTTATCTCGTGATCGACACGTTTCGAGACTCACGTTCGC CCACTGAGAAAGGgaaatttcatttgtttcaCAAGCACCATCAACCATAT ATAATGACTAAAGATGAAACATGTGAACtgaacattaaaaataaaacgaG TGAAGGACACTTACTGAAAGTTGTGTTATATGATGGGGATATTTTGAACA AAGACTTAGCAGTAGGGACAGTACACTTTCAGTTGTCCAACCTTCTTACC ATGGATGGAAGTGAAATGATTGTCACCAAAGACCTTGCCATGTTCCATGA GGTAAATCATCTACTGTTATCACTATTGCTTTTCTTGTTACGAAGGAAGA CAGAGAGCCTCAACCCTCTACCCTTCTCAGTAACCAAGAAGCTTCTTTGG AGATGTTATTGTCCGTTACGTGGATAGTAAATGCCGGAAAATACAGCCGA TAAGGGCAATAGTCGGGAATATGTTACATCGGTAGAGTTTCGAGTAGACT GTCAAACTGTTGTAAACCTGCTTCTGTAGTAGAACATTTCGTAGCGGAAC TTTTCTAGTTACTTTAAAATCTGTTACATTTTCCAGTATATAAGTGCTAT CGTGTCTTACTAGGAAATATCATTTATTTCCTTTTAATTCAGACATACCA TCGCCAAGGAGGTACTCTTACATCCACATTGCAATGGCATTCAAGAGCTA TGTTGTTTAAAATGCACATCGAATCCATCTCTTTCGACAAAgactttcaa aatatcaaagGTAAATTGTATCAAGTTCCTTGATTGTATACACTCTTGTT AAAATGAACCCCTTCTTCAGTACTTATCTTGTATTCTCTCCATCGTGATA GTAACAAATCCGCTTTTTTGGGTGTCCCTGGTAACAGAAGAAAATAATAA CTGGTGGATTTTGTTTCCCTTCTTGCTCTAGAACCTGCGAGCCTATTTTA TGTAAAATCGagtcttttctttttcgttttacaGAATTGTTCATCAAGAC GACGATATACGTTGGTAATGAAGAATACGTAGAATATTGCACCGATTCTT TTTCCGCCTCTAAAGACCTTCAGGTCGAACAAACATACAACATTGAACTG ACACCTGATAAAATACGAAATATGTTTATAGTGATACAAATATTCGAGAA ACACTTAATCGGAAGTATTTCTTTACATCGTACCGTTATTGGACCTTATA TGCGACCCACATTGAAAGATGAAACGGTTTCAGCGTGGGAGAAAATGATC GTGTGTCCGGGAGAGGAGGTGAAATGTATTTGTAATTTGTATCATTGATG AGAGTCTAAGAAGCCTTTGTTTTTGTTAAAGCACAAGCATTCGAGTATCT TCgcaaagagcccccccc

Coding sequence (CDS) from alignment at sc0000007:645945..649312+

>TCONS_00001007 ID=TCONS_00001007|Name=TCONS_00001007|organism=Clytia hemisphaerica|type=CDS|length=2043bp|location=Sequence derived from alignment at sc0000007:645945..649312+ (Clytia hemisphaerica)
ATGATGTTTCCAGCCCAGACGGAGCGAAGGCGATCCCATACCTTCTCTGA
AGGTGTCTTTGACGAAGCGGTCAAGGCCCATGGAGATCTACTTTCTCCTG
AAACCGCCAAGAAGAATGATCTGTGTCGACAATACAGTGAGGGATCACCA
GCTTCATTGAAAAGGACAGACACCCGATCTCCtatccttcaaaaacttca
taAAAAATTCTTCAGTCATGAGGCGAACAGTCCGACCAATTCACTGGAAG
ATTTGACACCTCGATCACGTTCTGGTACTGGTAATTCAATCGAACGCTTC
TTCAAGAGAGATGATAATTGTGAGTTTGAGATTCCGGTACTGACCCCACC
AAGAAGTCCACTAACCTCGCCCAATCAACGATCTTTGGGTGGAAGTCCTG
TCAACGGTATCGGCGAACTAGATATCGATCTCTACAAGAATTACTCGTCA
GAATCAGATGATAGTATTGTGAATGAGGAACCTCGTCGCATGAAACACGA
GAAACTGAAAACGAAAAGTTCGTTAGCTGATAGCCTATCACAAGATGGGT
TGGTGTGCTCGTTCGAAAAATTGCGTTGTTTCCAGGGTGATGAAGAGGAA
CGAATAAAAACGAACTCTGTCGGCAGTATCACTCTCTCTTTTCGANGAAG
AGGAACGAATAAAAACGAACTCTGTCGGTAGATGATGTTTCCAGCCCAGA
CGGAGCGAAGGCGATCCCATACCTTCTCTGAAGGTGTCTTTGACGAAGCG
GTCAAGGCCCATGGAGATCTACTTTCTCCTGAAACCGCCAAGAAGAATGA
TCTGTGTCGACAATACAGTGAGGGATCACCAGCTTCATTGAAAAGGACAG
ACACCCGATCTCCtatccttcaaaaacttcataAAAAATTCTTCAGTCAT
GAGGCGAACAGTCCGACCAATTCACTGGAAGATTTGACACCTCGATCACG
TTCTGGTACTGGTAATTCAATCGAACGCTTCTTCAAGAGAGATGATAATT
GTGAGTTTGAGATTCCGGTACTGACCCCACCAAGAAGTCCACTAACCTCG
CCCAATCAACGATCTTTGGGTGGAAGTCCTGTCAACGGTATCGGCGAACT
AGATATCGATCTCTACAAGAATTACTCGTCAGAATCAGATGATAGTATTG
TGAATGAGGAACCTCGTCGCATGAAACACGAGAAACTGAAAACGAAAAGT
TCGTTAGCTGATAGCCTATCACAAGATGGGTTGGTGTGCTCGTTCGAAAA
ATTGCGTTGTTTCCAGGGTGATGAAGAGGAACGAATAAAAACGAACTCTG
TCGGCAGTATCACTCTCTCTTTTCGANGAAGAGGAACGAATAAAAACGAA
CTCTGTCGGTAGATGATGTTTCCAGCCCAGACGGAGCGAAGGCGATCCCA
TACCTTCTCTGAAGGTGTCTTTGACGAAGCGGTCAAGGCCCATGGAGATC
TACTTTCTCCTGAAACCGCCAAGAAGAATGATCTGTGTCGACAATACAGT
GAGGGATCACCAGCTTCATTGAAAAGGACAGACACCCGATCTCCtatcct
tcaaaaacttcataAAAAATTCTTCAGTCATGAGGCGAACAGTCCGACCA
ATTCACTGGAAGATTTGACACCTCGATCACGTTCTGGTACTGGTAATTCA
ATCGAACGCTTCTTCAAGAGAGATGATAATTGTGAGTTTGAGATTCCGGT
ACTGACCCCACCAAGAAGTCCACTAACCTCGCCCAATCAACGATCTTTGG
GTGGAAGTCCTGTCAACGGTATCGGCGAACTAGATATCGATCTCTACAAG
AATTACTCGTCAGAATCAGATGATAGTATTGTGAATGAGGAACCTCGTCG
CATGAAACACGAGAAACTGAAAACGAAAAGTTCGTTAGCTGATAGCCTAT
CACAAGATGGGTTGGTGTGCTCGTTCGAAAAATTGCGTTGTTTCCAGGGT
GATGAAGAGGAACGAATAAAAACGAACTCTGTCGGCAGTATCACTCTCTC
TTTTCGANGAAGAGGAACGAATAAAAACGAACTCTGTCGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000583XLOC_000583Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001007-proteinTCONS_00001007-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001007-exon-sc0000007-1491911889:645945..646257TCONS_00001007-exon-sc0000007-1491911889:645945..646257Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1510915933:645945..646257TCONS_00001007-exon-sc0000007-1510915933:645945..646257Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1575043694:645945..646257TCONS_00001007-exon-sc0000007-1575043694:645945..646257Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1491911889:646468..646560TCONS_00001007-exon-sc0000007-1491911889:646468..646560Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1510915933:646468..646560TCONS_00001007-exon-sc0000007-1510915933:646468..646560Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1575043694:646468..646560TCONS_00001007-exon-sc0000007-1575043694:646468..646560Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1491911889:647469..648245TCONS_00001007-exon-sc0000007-1491911889:647469..648245Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1510915933:647469..648245TCONS_00001007-exon-sc0000007-1510915933:647469..648245Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1575043694:647469..648245TCONS_00001007-exon-sc0000007-1575043694:647469..648245Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1491911889:648587..648704TCONS_00001007-exon-sc0000007-1491911889:648587..648704Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1510915933:648587..648704TCONS_00001007-exon-sc0000007-1510915933:648587..648704Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1575043694:648587..648704TCONS_00001007-exon-sc0000007-1575043694:648587..648704Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1491911889:648929..649312TCONS_00001007-exon-sc0000007-1491911889:648929..649312Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1510915933:648929..649312TCONS_00001007-exon-sc0000007-1510915933:648929..649312Clytia hemisphaericaexon
TCONS_00001007-exon-sc0000007-1575043694:648929..649312TCONS_00001007-exon-sc0000007-1575043694:648929..649312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:645945..649312 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0961456 0.0703179 0.0567091 0 0.259316 0.161165 0.370831 0.20662 0.208556 0.397223 0.451914 0.442031 7.14286 8.42143 1.67733 3.15384 2.04745 3.08338 23.1955 24.3117 3.00587 2.43024 1.86835 2.13843 8.67532 8.79699 86.3599 97.75 2.3168 2.22035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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