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TCONS_00000986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000986
Unique NameTCONS_00000986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000986 ID=TCONS_00000986|Name=TCONS_00000986|organism=Clytia hemisphaerica|type=transcript|length=749bp
aTTTTTTACTCCGCAAACCATCAAACATcgatttcaaacatgaaacgtcA
CGATGTATGAGGAACAATGTTTGttggtttgctcccagcttaaGCCATTG
TCGCGTTTTGCTTTCCAAATTGAAGGATTACTCAAGTGACGCAATGCAAT
ggtatcattcaaactgacgtCAATTAAAAATATCGTTAGAAGCTTGAAGT
TTTGAAGTGGTTGGTGTGTTTCCACCTTTTCTGAAAAAGGTTTTCAtggg
aaagttttttcaaaaaagattggaAGGAAGATGGGAAACTACGAAAGACA
GGAAAAATTGTTGGAGAGAAAACATGAAGAGTTGAAACAACAGGTTCATG
AAATGCGACAAGAGAGCGCAGCCATCCTCAACAATATCTCACTCACTGAA
CACAAAATCAAGTTGGAGAAGAATTATCTCAATCTCAAAAgatcaaccaa
tcaaatcgtCGGTGAAAGGTTTCTGGATTATAAGAAAAGTTTCACTGCAC
GCTTGGAGCACATTAAAGCCAAGATCAATCTTTACGTCATGGACTTGACA
CAAGAAGAAAACTTCCTAAAGAACAGATTGGACTGGCGGCTCGACAAAAA
GAAAGTTCAAGAGATAGTACAATTGGAAGACCTACGCAAGAAATTACAAA
ATGTTTCTCTCAATTTGAAGGAAGAAATCAGATATATGCAGTCTTTCAGA
TTGGACAATCAAGACATCGAGTTATGATCGTTTTGTTTATTTAAAACTG
Run BLAST on NCBI

protein sequence of TCONS_00000986-protein

>TCONS_00000986-protein ID=TCONS_00000986-protein|Name=TCONS_00000986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MGNYERQEKLLERKHEELKQQVHEMRQESAAILNNISLTEHKIKLEKNYL
NLKRSTNQIVGERFLDYKKSFTARLEHIKAKINLYVMDLTQEENFLKNRL
DWRLDKKKVQEIVQLEDLRKKLQNVSLNLKEEIRYMQSFRLDNQDIEL
Run BLAST on NCBI

transcript from alignment at sc0000007:293261..295111+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000986 ID=TCONS_00000986|Name=TCONS_00000986|organism=Clytia hemisphaerica|type=transcript|length=1851bp|location=Sequence derived from alignment at sc0000007:293261..295111+ (Clytia hemisphaerica)
aTTTTTTACTCCGCAAACCATCAAACATcgatttcaaacatgaaacgtcA CGATGTATGAGGAACAATGTTTGttggtttgctcccagcttaaGCCATTG TCGCGTTTTGCTTTCCAAATTGAAGGATTACTCAAGTGACGCAATGCAAT ggtatcattcaaactgacgtCAATTAAAAATATCGTTAGAAGCTTGAAGT TTTGAAGTGGTTGGTGTGTTTCCACCTTTTCTGAAAAAGGTTTTCAtggg aaagttttttcaaaaaagattggaAGGAAGATGGGAAACTACGAAAGACA GGAAAAATTGTTGGAGAGAAAACATGAAGAGTTGAAACAACAGGTTCATG AAATGCGACAAGAGAGCGCAGCCATCCTCAACAATATCTCACTCACTGAA CACAAAATCAAGTTGGAGAAGAATTATCTCAATCTCAAAAgatcaaccaa tcaaatcgtCGGTGAAAGGTTTCTGGATTATAAGGTAAGAAAGTGATTTC ACCCAATGGATGgatatgaaaaatcaaattcaagtAGAAATGGAATTCAT TTAGTGAAATTCTCGTCCTTGTAAAAATGAGGAAAAGTTTAACCAAACTG AGGATGTCGGCGCATCAAAGAGCGACTTCCCTCTCCAATTAGATACCAAT TCATTGAAAAGTCCTGTTGAGATTGGCGAGTTTTTGTATTCACCCTTTTG GGGAAGGCGTAGAGACTGGAACAACTTGGAACAATCCGCAGTTTTTGACC CATAAAATTGAGGGGGTATCTTAGCGCTCATATACAATCGTACAGGGAGT TATACAAATCAAAAAACTATAACCAACTCCGCCACAATAAAAGCACAGAT ATATGAACTGATTATTGATTAACTCATTATTGATAACGGCTGAACGGTGA AATTGACGTGTCTATTTCTTTCATTAGTTTTCACGATCCAgctaaaaaaa actaaattttctggatttattttcgcgaatcagaCTTAAAATATTTCGCG TGGGTTTAATTTTGCAAATCAATTGAAATGTCCCTGAAAACACCGATTTT CTCACAAATAGCACATTTACACGGTATTTCAAGCCGAAAATCTGATCTAT TACGTGGATTTATTTCGCGCCGAGATAGCAATCTTTTGCGATTTTGCGAG TTTTATTTTCACGAAAAAGGCAAAGATTCGCGAAAATACGAGATTACATC TCACAAGAAAGAATTAATCCGATTGGGGTATAGCGTTTTGCTTTAGTTCG AGAACTCAAGTTGAATTGTTAGCACTAACTTTTCTCAAAGGAAAAGCCGA AAAAGtaattgaaatatttgagtAATGAAAAAATTCGGTCTGTTATACAA GACTTTTAGAATCCGTCGCATATTTCTTGAGTAGATCGggttttgaaact tttgtcgAGAGGGGGGGGGCAAGAAATGGTTGATACGATAGAGCATaaaa ttctgcattttcattCTGCAGAGCATAAAAGTATACTACAACAAGTCAGG TACATTAATCATTAAGGATCGTCATCtatctgaaaaaaatagcttttcTT TGTGTGGtcactaaaatattttgatttctgTTCTAGAAAAGTTTCACTGC ACGCTTGGAGCACATTAAAGCCAAGATCAATCTTTACGTCATGGACTTGA CACAAGAAGAAAACTTCCTAAAGAACAGATTGGACTGGCGGCTCGACAAA AAGAAAGTTCAAGAGATAGTACAATTGGAAGACCTACGCAAGAAATTACA AAATGTTTCTCTCAATTTGAAGGAAGAAATCAGATATATGCAGTCTTTCA GATTGGACAATCAAGACATCGAGTTATGATCGTTTTGTTTATTTAAAACT G

Coding sequence (CDS) from alignment at sc0000007:293261..295111+

>TCONS_00000986 ID=TCONS_00000986|Name=TCONS_00000986|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0000007:293261..295111+ (Clytia hemisphaerica)
ATGGGAAACTACGAAAGACAGGAAAAATTGTTGGAGAGAAAACATGAAGA
GTTGAAACAACAGGTTCATGAAATGCGACAAGAGAGCGCAGCCATCCTCA
ACAATATCTCACTCACTGAACACAAAATCAAGTTGGAGAAGAATTATCTC
AATCTCAAAAgatcaaccaatcaaatcgtCGGTGAAAGGTTTCTGGATTA
TAAGAAAAGTTTCACTGCACGCTTGGAGCACATTAAAGCCAAGATCAATC
TTTACGTCATGGACTTGACACAAGAAGAAAACTTCCTAAAGAACAGATTG
GACTGGCGGCTCGACAAAAAGAAAGTTCAAGAGATAGTACAATTGGAAGA
CCTACGCAAGAAATTACAAAATGTTTCTCTCAATTTGAAGGAAGAAATCA
GATATATGCAGTCTTTCAGATTGGACAATCAAGACATCGAGTTATGAATG
GGAAACTACGAAAGACAGGAAAAATTGTTGGAGAGAAAACATGAAGAGTT
GAAACAACAGGTTCATGAAATGCGACAAGAGAGCGCAGCCATCCTCAACA
ATATCTCACTCACTGAACACAAAATCAAGTTGGAGAAGAATTATCTCAAT
CTCAAAAgatcaaccaatcaaatcgtCGGTGAAAGGTTTCTGGATTATAA
GAAAAGTTTCACTGCACGCTTGGAGCACATTAAAGCCAAGATCAATCTTT
ACGTCATGGACTTGACACAAGAAGAAAACTTCCTAAAGAACAGATTGGAC
TGGCGGCTCGACAAAAAGAAAGTTCAAGAGATAGTACAATTGGAAGACCT
ACGCAAGAAATTACAAAATGTTTCTCTCAATTTGAAGGAAGAAATCAGAT
ATATGCAGTCTTTCAGATTGGACAATCAAGACATCGAGTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000574XLOC_000574Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000986-proteinTCONS_00000986-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000986-exon-sc0000007-1491911889:293261..293744TCONS_00000986-exon-sc0000007-1491911889:293261..293744Clytia hemisphaericaexon
TCONS_00000986-exon-sc0000007-1510915933:293261..293744TCONS_00000986-exon-sc0000007-1510915933:293261..293744Clytia hemisphaericaexon
TCONS_00000986-exon-sc0000007-1575043694:293261..293744TCONS_00000986-exon-sc0000007-1575043694:293261..293744Clytia hemisphaericaexon
TCONS_00000986-exon-sc0000007-1491911889:294847..295111TCONS_00000986-exon-sc0000007-1491911889:294847..295111Clytia hemisphaericaexon
TCONS_00000986-exon-sc0000007-1510915933:294847..295111TCONS_00000986-exon-sc0000007-1510915933:294847..295111Clytia hemisphaericaexon
TCONS_00000986-exon-sc0000007-1575043694:294847..295111TCONS_00000986-exon-sc0000007-1575043694:294847..295111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:293261..295111 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.55474 1.09534 0 0 0 0.158154 0 0 0 0 0 0 0 0 0 0 0 0 0.063522 0.0929515 0 0 70.3271 21.4044 0.202696 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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