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TCONS_00000984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000984
Unique NameTCONS_00000984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000984 ID=TCONS_00000984|Name=TCONS_00000984|organism=Clytia hemisphaerica|type=transcript|length=634bp
GTCCAATCCACATTTGAGTGATTCTGAATTAGAGATCACCGTGGTTCGAT
GTTTGAACGTACCGCTACAACAAGgctACCAACCAAAAGATATGTATACT
TATGTCACTTGTGAGATGGCCTATCCTACGGAGAAGCCGCAAACTGCAAC
AACGACCACCATCAAAGAAACCATAAACCCTGaataCAACGGTGTTTTCA
AAGTGCTTATTGATCGCAAGCAAAGTGCTTTTAAAAGGTTTTGTAGGCGT
GGCGTGGTCAACTTCAAATTATTTTATGTCAGAGGCTTTCTGAAGAGTGA
CAAAGCAATCGGACAAGCGAGCGTCAAATTAACAGGATTCGCCAACAAAT
GTGAAATCCACGAATGTGTTGATATCGTCGACCTGGAGAAAGGTCGTAAA
GCAATTGGTGGGAAGATAGAAATCGTGCTCAAAATACGCGAACCTTTTGT
AGACAAAGATACAGAGATTGTCAACGAGAAATGGTTGATATTAGATGCAC
ATCTGCGCAAACTCGATATGaaaacccCATCAGCAATTCCTCAAGGAAAA
GCCGTTAGCGCAAATTCGAAAGTTTGCGCCATTTCTTGAATTCTTATTGG
TGGAGCATAATCCATTGCAGAAGTTTTGTTCGAA
Run BLAST on NCBI

transcript from alignment at sc0000007:249142..255236+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000984 ID=TCONS_00000984|Name=TCONS_00000984|organism=Clytia hemisphaerica|type=transcript|length=6095bp|location=Sequence derived from alignment at sc0000007:249142..255236+ (Clytia hemisphaerica)
GTCCAATCCACATTTGAGTGATTCTGAATTAGAGATCACCGTGGTTCGAT GTTTGAACGTACCGCTACAACAAGGTGAGTGACAATGCTTTCTTTTGTTG AATGAACTTCACTTCACTTTCTATTGATTTTTGAACTTTGCCTGGATGTC CACTTTGACTTTCGATTTCTCCGAACAACTCCTTACGTAAAAAGTCTCAT CTTTTGTTTAGACAACAACCActgctttttttttatttcaggctACCAAC CAAAAGATATGTATACTTATGTCACTTNGTCAACACAACAAGGCTCATCA CCTACTGGTTTAAGAGAAGAAATCAAGATGACTGGAACGAACAATGAAAA CTATGTGTTCGTTGAAACCGCTCTTCAAAGACAAATTGAGGTCAGTGCTT CTTTACCATTGTTACCTCACAAAATTAAGTATTTTATTTCTTGACGGTGA AGTTCGTTTGATAAAGACGattgttttaagttttttaatttttcatacat AGGCCGCAGAAAAGAACACAGCTCATTACAAATTGATGGGAAATTTAGAT GCTGCCAAAAAGTAAGTTTTCCAGCTTTTCCGGCTTCAACATTCTTCTGT ATAAATATCAACGGTTTGATTGATGTAATTTTACCTTGCAATTACataat tctttttaatttctttcataGCTTTGAAATGTTGTTAAAGAACTCTCAGA AAGACATAATGACGCTACAACAATACAAAGCAAATAAATCGCCCGTTCCC AAATGCTTCTACGTCAAAAAGACCTTCCCCGTTACAAAgtaattttttct tctctttggTTTACGGAATCAGTAATATCTGATAGTGACTTGACAAAACT AGTCAGTTCTCGATGTAAGTGCTTTTTTCACatgataaatttttcatttt tcttacatACAGGTCCAATCCACATTTGAGTGATTCTGAATTAGAGATCA CCGTGGTTCGATGTTTGAACGTACCGCTACAACAAGGTGAGTGACAATGC TTTCTTTTGTTGAATGAACTTCACTTCACTTTCTATTGATTTTTGAACTT TGCCTGGATGTCCACTTTGACTTTCGATTTCTCCGAACAACTCCTTGCGT AAAAAGTCTCATCTTTTGTTTAGACAACAACCActgctttttttttattt caggctACCAACCAAAAGATATGTATACTTATGTCACTTGTGAGATGGCC TATCCTACGGTATGTACTGTAATCATTCtttatattttatgattttgaag gttttataaATAACTGAAAATATGATTCATTTCCACCACCGTTCCCATTT GCATAACTgcgatattttgaaaattcgaattCGTGTTCTCGGATCAAAAT CCCAGTGTCAAACTTTCAGAAATGTATTTGTGAAAAAGTTTCATaagttt tctaaaaattaaGTTAAGCCAAAACTTCAATAGATCTAACATCTAAATGC AGCTCTAAGGGAGTATGGTGTGTACAATGCTATGTAATGATAGTAAGGAA TGAAAGAAATGGTGCATAAGGGTTGCAAGGATTTTATTTATTCTATGAAA GTATTTAAAGATTTGTGAACAATTATTGTCGTTGAGTTAGATCGATAACG ACTGGTTGTTGGTTGATGGCTGACAAGTTGGGAATGGGTGTGATGTTTCG TTTTGCTTGTTTTCGTGGTCTTTGAATATATTGGGGGGTAGTATTTTGTT GATAAGCTTGGGTGTAAATTCCTGATGGTTGAGGAATGTATGGAAAATAA GCGATATTTTGTGTGGTGTTTTGTTGAGTCATCATTCGAGGGCGTTTATG ATAGAAAGCTGGGAAGACGATGTTGTTGCCAACATTGTGTCTTTTGCGAG AACGTAAAGAAGCTATGTCATAGTATGGTTTGAGTGGATTGATTGGTCGA ACAGGAGCTGCGGGTTTTGGTGCAGGGGGTGTGATTTCTTTTGGTTTTTC GAACAAAGCCTCAAACAGGTCCTCTTTGGAGGGCTTTGGTGTCACATCGT CATTTTGTGTCACGCGTGACTTTTTGCAAGCTATTTGATCGCCAGAAGAA GATCTTTTTGATCCAACTCGACGGAAGTTCAAAGAATCCGAAAATTCAGA CAATTCTGTATTCAAAGCATCAGTTGAAGATGTAGTTTGGTTTTGTCCGC CAAGTGATGGTTCTTGTGCGACTGCACTGTTGCATGTATCAAGGGGTTTT AGCTCTTTGCTAAACAAACcatttgaattgcttttgagagATGCTTGTTG TGATGTCTTTGGAATGACGTCATCTTTGGTTTGTTGAacaattttgattg gttcatttGGTTGATATCGTTCAAGATATCCTCTGCAAGCATCGAGTTGT GATtcttgaattttggtgaaattcTCCAAATCATCGAAACTAGAAAAGAG GAAAAGAGTTGATCGAATTCTGAAATGATTTGgtggaaaatatttcaatt cgatGTATGAACAAGTTCAAAAAACGAACAACcactcaacaacaacaata cATCATTTGAAATCGATTTCTTACCTTTCTTTTAGATATTGATAAATTGA TTTTAATTCGTTGATATCTTTGATACAGTCCAAACCTCCAtcaatttctt ttaatttcCGTTGGCAAATTTTATGGCGATCCCCAAAATCACGTGTCAAG TATTTTGCTTCTTCGATCACCTGATTTAAATTCGCCAAGATTTTTTCTTG AGATGGCGAAAGGTTTCTTCGGCCATTCTTCATCAAAGAAGAAACAATTT CTGCCGAAGCAAATAAGTTGATTTGAATTTGTGTGATGTACGTATTCAAG TCGTTGTATCTAAAATTGGGGAAATAAGATCAgttataaacatcaaaaca ccTTTTTAGCGCTGACAGTCACTCCCTTTACTTCCCTTCTACATGTTTTT ACATCTAACAGAATGATTTAGGGTTCAATNAAAACACCTTTTTGGCGCTG ACAGTCACTCCCTTTACTTCCCTTCTACATGTTTTACATCTAACAGAATG ATTTAGGGTTCAATGAAAAGTATGTAGATGAAATTTTACCTCTCTCGGAG ATTTCTATATGCTTTTCGGACATCAGATCTCTTTGTGATGATATCTAAAA GAATATCTTCTGCATCATCTTGTATCTGACTGCAAAACATGGGACCACAA TATCGATATTGATCTTTGTTTCCAACTGCTTCGTCGATCAAATCTTTCAA CTCGCCCCAGGCTTTCGCGTTGTCGAATTTGGAATTCATTTTCAAGTTTC GACGAATTTGGAACAAAAGGATGCACCAGAACAAATTTAGTATGCAAAAC AATCCAATGAAATAGTATTTCTCGCGAATAATCGAAAGAAATAGCGAGAG CTGATAAAACACAGCCACTCTTCAGAATCAAAATTCCTACctaaatttca tttcaacacCGCGCGTGTTTTCTTAAAgcgaaaaaaatttgacgtcaata tTTTAATTGACGTCATTCAAGCTACATATCGACAGCAATGATGACGAAAC CAAATGGTGGAGAGGATTGTTCATTCTTGGAGACGCAAAGGGGATTTTGG ACTTGGACTTTTGGGGTTTCTAAGTAACTTTAGCTAATTAATTCCTGTGT CATATATTGTCATATATTACACGATAAATTTCATATTCAGGAGAAGCCGC AAACTGCAACAACGACCACCATCAAAGAAACCATAAACCCTGGTGAGGAC ATTCGCTTCGCTATGCTATGGGATTTTGGTGGAAGTTTGATTTAGATGTT GAAAAGATTTTAGTTATTTATTAAGTTTTTTATGGGATTTTCCTGAGATT TTACCTTTATCTTTCTTGCACAGAGAAGCGTGTCAGCAATTTcgattttg ctattttttccctTGTAAAATTCCTGAGATTTGTCGAGTAACAATGCTCT GCTTTCTTATTTCAACATTCTTCATCATTCTGATTTCACACAATTCTGGT GACTTTAATCTGTTCACTATTATTTTCACTAATTGTTGCTAAGCTACTTT TTTTCCTGCAATTCCTTTGGGCGTATTTTTCACTCCCTTTTGTCTCTTTC GACAAAGCTAATCTTTCTtttcatatttcattttcagaataCAACGGTGT TTTCAAAGTGCTTATTGATCGCAAGCAAAGTGCTTTTAAAAGGTTTTGTA GGCGTGGCGTGGTCAACTTCAAATTATTTTATGTCAGGTAGGTGGAATGT Tgagtctatatattaatacgcttaaacgtgtgtgtttacaacattttgta aaaagttttcgcaaatctaacaaagctctacaaagcctcctcttcatggc gttgaaccatcatctttttgcaccctaagcagatttcctaccactagact aactttgagaccccaagatactattttctacTCACCAAGTCtttggagct tgatgggttaaaatcaaccatcttcccaatttttttttctcgttttaaag aattcttattcttaaaactttctgtttacaatagcggctccctatcactt tcaaaacttttcaaagtctataaaagtcaccctcgaatgtccaaccacga tggctagccacgatggctaaaaagatctaaaatatatatacttttgctaa gccatttatttaattgtggttaaaaattacaatgcaatgttatcttcttt ctcctttatttcttaaaatcaaaatcaaatcatcacTCGGCGGCTATCTT TCTTCCGttagaattttttagatgtgtagtgattcactggaatgggacac gcagcgtgcgacgctgcgcatacggctagttgATTTTAAACGTTCTCAAT TTACTAACTACAGTGCagtcataactcgaacacgaaCGGGGAATGCAata aacttgttcgagttgtagaggttcgagttaaagagacgcCACTGTATAAC CCATAGTGTCCTAGTAGGTTGGTTCCCCaacttgaaaatcgaaaaaagtc CCTCTTTAGTCCCCCCTaaggttttacaaaaaaatttccccTTTGAAAAT TGTGTTAAACTTCTCACAAAACCCACATTTAGTATGGAAGTATTATTTTA AAAGAATACTATGTAACCAAAGAGAAAAAAGATATCGAAACTTGAATCGC ATTGTATTTGTCCATTAAACTGCTTGCTTTTTTCTGGTTGTAGAGGCTTT CTGAAGAGTGACAAAGCAATCGGACAAGCGAGCGTCAAATTAACAGGATT CGCCAACAAATGTGAAATCCACGAATGTGTTGATGTAAGTtcgctttcat tttcttctccTAAATCTCTTCAAACATTTCCAATCTAAATCGCTGGCCTG GGACATTCCAAGACAGGACCACGATTCGCTATGCTTGTTCCTTTAATCTT ACCCAtccaattcaatttttcaatttctctaCATTTTTTCCGTAGATCGT CGACCTGGAGAAAGGTCGTAAAGCAATTGGTGGGAAGATAGAAATCGTGC TCAAAATACGCGAACCTTTTGTAGACAAAGATACAGAGATTGTCAACGAG AAATGGTTGATATTAGATGCACATCTGCGCAAACTCGATATGGTAAGATG TTAGAAATGCTGTGTGATACCAAGCACTGCGATTTGCTTTGAAATAACAT TATCTTTCCTTTAAACAAATACTACTTTTCCAGGAGGGAttcgttttatt ttgattgtGTTTCATTGAtcttccaactttttttttcagaaaacccCATC AGCAATTCCTCAAGGAAAAGCCGTTAGCGCGTGAGTATagacattttctt ttcttttgaattatttcaaaataatttacttcTCCCCACCTGCTTAGGTA TCAGAGATATCCACCAATATGCAATTTTTGACCTCCACCATGAAGAATTC AAGAAATTTGAGATAGTTCACCAGGCATTTGTCTGTCTGTCTTTTGACCG GCATCTTTGTTCTGATCTCTAGCCATCCATCGAACGGTCATCAACACATC AAACTACATTCTTTATGAACGAATCTTTCTTCCGATAATTTTCTCTTTCT ACTATTTCTTTCTTCTCCATAGAAATTCGAAAGTTTGCGCCATTTCTTGA ATTCTTATTGGTGGAGCATAATCCATTGCAGAAGTTTTGTTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000572XLOC_000572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000984-exon-sc0000007-1491911889:249142..249215TCONS_00000984-exon-sc0000007-1491911889:249142..249215Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1510915933:249142..249215TCONS_00000984-exon-sc0000007-1510915933:249142..249215Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1575043694:249142..249215TCONS_00000984-exon-sc0000007-1575043694:249142..249215Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1491911889:250295..250350TCONS_00000984-exon-sc0000007-1491911889:250295..250350Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1510915933:250295..250350TCONS_00000984-exon-sc0000007-1510915933:250295..250350Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1575043694:250295..250350TCONS_00000984-exon-sc0000007-1575043694:250295..250350Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1491911889:252782..252833TCONS_00000984-exon-sc0000007-1491911889:252782..252833Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1510915933:252782..252833TCONS_00000984-exon-sc0000007-1510915933:252782..252833Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1575043694:252782..252833TCONS_00000984-exon-sc0000007-1575043694:252782..252833Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1491911889:253229..253328TCONS_00000984-exon-sc0000007-1491911889:253229..253328Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1510915933:253229..253328TCONS_00000984-exon-sc0000007-1510915933:253229..253328Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1575043694:253229..253328TCONS_00000984-exon-sc0000007-1575043694:253229..253328Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1491911889:254285..254375TCONS_00000984-exon-sc0000007-1491911889:254285..254375Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1510915933:254285..254375TCONS_00000984-exon-sc0000007-1510915933:254285..254375Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1575043694:254285..254375TCONS_00000984-exon-sc0000007-1575043694:254285..254375Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1491911889:254537..254683TCONS_00000984-exon-sc0000007-1491911889:254537..254683Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1510915933:254537..254683TCONS_00000984-exon-sc0000007-1510915933:254537..254683Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1575043694:254537..254683TCONS_00000984-exon-sc0000007-1575043694:254537..254683Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1491911889:254831..254871TCONS_00000984-exon-sc0000007-1491911889:254831..254871Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1510915933:254831..254871TCONS_00000984-exon-sc0000007-1510915933:254831..254871Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1575043694:254831..254871TCONS_00000984-exon-sc0000007-1575043694:254831..254871Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1491911889:255164..255236TCONS_00000984-exon-sc0000007-1491911889:255164..255236Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1510915933:255164..255236TCONS_00000984-exon-sc0000007-1510915933:255164..255236Clytia hemisphaericaexon
TCONS_00000984-exon-sc0000007-1575043694:255164..255236TCONS_00000984-exon-sc0000007-1575043694:255164..255236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:249142..255236 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.9371 14.9603 6.43962 7.43637 5.18155 3.52903 7.93638 6.40909 15.8328 19.3394 13.6789 10.3689 13.5831 15.5673 10.2658 15.651 14.558 16.7771 15.7544 15.1839 10.8531 11.5377 11.7571 9.43628 14.4303 7.6901 11.8914 7.34271 9.96025 11.3191
Blast
BLAST of TCONS_00000984 vs. Swiss-Prot (Human)
Match: C2D1B (Coiled-coil and C2 domain-containing protein 1B OS=Homo sapiens GN=CC2D1B PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.011e-28
Identity = 57/162 (35.19%), Postives = 96/162 (59.26%), Query Frame = 2
Query:   14 LSDSELEITVVRCLNVPLQQGYQPKDMYTYVTCEMAYXXXXXXXXXXXXXXXXXN-PEYNGVFKVLIDRKQSAFKRFCRRGVVNFKLFYVRGFLKSDKAIGQASVKLTGFANKCEIHECVDIVDLEKGRKAIGGKIEIVLKIREPFVDKDTEIVNEKWLILD 496
            L+ +E+ + +VR +N+P   G  P D+  +V  E  YP       + T + +  N PE++ +FK+ I+R    FKR  +   + F++F+   F +SDK +G A +KL    N+CEI E V+++D   GRK  GGK+E+ +++REP   +D ++V E WL+L+
Sbjct:  696 LNSTEMHLIIVRGMNLPAPPGVTPDDLDAFVRFEFHYPNSDQAQKSKTAVVKNTNSPEFDQLFKLNINRNHRGFKRVIQSKGIKFEIFHKGSFFRSDKLVGTAHLKLERLENECEIREIVEVLD---GRKPTGGKLEVKVRLREPLSGQDVQMVTENWLVLE 854          
The following BLAST results are available for this feature:
BLAST of TCONS_00000984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
C2D1B4.011e-2835.19Coiled-coil and C2 domain-containing protein 1B OS... [more]
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