TCONS_00000984 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000984
Unique Name	TCONS_00000984
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	634

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000007:249142..255236+

transcript sequence

>TCONS_00000984 ID=TCONS_00000984|Name=TCONS_00000984|organism=Clytia hemisphaerica|type=transcript|length=634bp
GTCCAATCCACATTTGAGTGATTCTGAATTAGAGATCACCGTGGTTCGAT
GTTTGAACGTACCGCTACAACAAGgctACCAACCAAAAGATATGTATACT
TATGTCACTTGTGAGATGGCCTATCCTACGGAGAAGCCGCAAACTGCAAC
AACGACCACCATCAAAGAAACCATAAACCCTGaataCAACGGTGTTTTCA
AAGTGCTTATTGATCGCAAGCAAAGTGCTTTTAAAAGGTTTTGTAGGCGT
GGCGTGGTCAACTTCAAATTATTTTATGTCAGAGGCTTTCTGAAGAGTGA
CAAAGCAATCGGACAAGCGAGCGTCAAATTAACAGGATTCGCCAACAAAT
GTGAAATCCACGAATGTGTTGATATCGTCGACCTGGAGAAAGGTCGTAAA
GCAATTGGTGGGAAGATAGAAATCGTGCTCAAAATACGCGAACCTTTTGT
AGACAAAGATACAGAGATTGTCAACGAGAAATGGTTGATATTAGATGCAC
ATCTGCGCAAACTCGATATGaaaacccCATCAGCAATTCCTCAAGGAAAA
GCCGTTAGCGCAAATTCGAAAGTTTGCGCCATTTCTTGAATTCTTATTGG
TGGAGCATAATCCATTGCAGAAGTTTTGTTCGAA

Run BLAST on NCBI

transcript from alignment at sc0000007:249142..255236+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000984 ID=TCONS_00000984|Name=TCONS_00000984|organism=Clytia hemisphaerica|type=transcript|length=6095bp|location=Sequence derived from alignment at sc0000007:249142..255236+ (Clytia hemisphaerica)
GTCCAATCCACATTTGAGTGATTCTGAATTAGAGATCACCGTGGTTCGAT
GTTTGAACGTACCGCTACAACAAGGTGAGTGACAATGCTTTCTTTTGTTG
AATGAACTTCACTTCACTTTCTATTGATTTTTGAACTTTGCCTGGATGTC
CACTTTGACTTTCGATTTCTCCGAACAACTCCTTACGTAAAAAGTCTCAT
CTTTTGTTTAGACAACAACCActgctttttttttatttcaggctACCAAC
CAAAAGATATGTATACTTATGTCACTTNGTCAACACAACAAGGCTCATCA
CCTACTGGTTTAAGAGAAGAAATCAAGATGACTGGAACGAACAATGAAAA
CTATGTGTTCGTTGAAACCGCTCTTCAAAGACAAATTGAGGTCAGTGCTT
CTTTACCATTGTTACCTCACAAAATTAAGTATTTTATTTCTTGACGGTGA
AGTTCGTTTGATAAAGACGattgttttaagttttttaatttttcatacat
AGGCCGCAGAAAAGAACACAGCTCATTACAAATTGATGGGAAATTTAGAT
GCTGCCAAAAAGTAAGTTTTCCAGCTTTTCCGGCTTCAACATTCTTCTGT
ATAAATATCAACGGTTTGATTGATGTAATTTTACCTTGCAATTACataat
tctttttaatttctttcataGCTTTGAAATGTTGTTAAAGAACTCTCAGA
AAGACATAATGACGCTACAACAATACAAAGCAAATAAATCGCCCGTTCCC
AAATGCTTCTACGTCAAAAAGACCTTCCCCGTTACAAAgtaattttttct
tctctttggTTTACGGAATCAGTAATATCTGATAGTGACTTGACAAAACT
AGTCAGTTCTCGATGTAAGTGCTTTTTTCACatgataaatttttcatttt
tcttacatACAGGTCCAATCCACATTTGAGTGATTCTGAATTAGAGATCA
CCGTGGTTCGATGTTTGAACGTACCGCTACAACAAGGTGAGTGACAATGC
TTTCTTTTGTTGAATGAACTTCACTTCACTTTCTATTGATTTTTGAACTT
TGCCTGGATGTCCACTTTGACTTTCGATTTCTCCGAACAACTCCTTGCGT
AAAAAGTCTCATCTTTTGTTTAGACAACAACCActgctttttttttattt
caggctACCAACCAAAAGATATGTATACTTATGTCACTTGTGAGATGGCC
TATCCTACGGTATGTACTGTAATCATTCtttatattttatgattttgaag
gttttataaATAACTGAAAATATGATTCATTTCCACCACCGTTCCCATTT
GCATAACTgcgatattttgaaaattcgaattCGTGTTCTCGGATCAAAAT
CCCAGTGTCAAACTTTCAGAAATGTATTTGTGAAAAAGTTTCATaagttt
tctaaaaattaaGTTAAGCCAAAACTTCAATAGATCTAACATCTAAATGC
AGCTCTAAGGGAGTATGGTGTGTACAATGCTATGTAATGATAGTAAGGAA
TGAAAGAAATGGTGCATAAGGGTTGCAAGGATTTTATTTATTCTATGAAA
GTATTTAAAGATTTGTGAACAATTATTGTCGTTGAGTTAGATCGATAACG
ACTGGTTGTTGGTTGATGGCTGACAAGTTGGGAATGGGTGTGATGTTTCG
TTTTGCTTGTTTTCGTGGTCTTTGAATATATTGGGGGGTAGTATTTTGTT
GATAAGCTTGGGTGTAAATTCCTGATGGTTGAGGAATGTATGGAAAATAA
GCGATATTTTGTGTGGTGTTTTGTTGAGTCATCATTCGAGGGCGTTTATG
ATAGAAAGCTGGGAAGACGATGTTGTTGCCAACATTGTGTCTTTTGCGAG
AACGTAAAGAAGCTATGTCATAGTATGGTTTGAGTGGATTGATTGGTCGA
ACAGGAGCTGCGGGTTTTGGTGCAGGGGGTGTGATTTCTTTTGGTTTTTC
GAACAAAGCCTCAAACAGGTCCTCTTTGGAGGGCTTTGGTGTCACATCGT
CATTTTGTGTCACGCGTGACTTTTTGCAAGCTATTTGATCGCCAGAAGAA
GATCTTTTTGATCCAACTCGACGGAAGTTCAAAGAATCCGAAAATTCAGA
CAATTCTGTATTCAAAGCATCAGTTGAAGATGTAGTTTGGTTTTGTCCGC
CAAGTGATGGTTCTTGTGCGACTGCACTGTTGCATGTATCAAGGGGTTTT
AGCTCTTTGCTAAACAAACcatttgaattgcttttgagagATGCTTGTTG
TGATGTCTTTGGAATGACGTCATCTTTGGTTTGTTGAacaattttgattg
gttcatttGGTTGATATCGTTCAAGATATCCTCTGCAAGCATCGAGTTGT
GATtcttgaattttggtgaaattcTCCAAATCATCGAAACTAGAAAAGAG
GAAAAGAGTTGATCGAATTCTGAAATGATTTGgtggaaaatatttcaatt
cgatGTATGAACAAGTTCAAAAAACGAACAACcactcaacaacaacaata
cATCATTTGAAATCGATTTCTTACCTTTCTTTTAGATATTGATAAATTGA
TTTTAATTCGTTGATATCTTTGATACAGTCCAAACCTCCAtcaatttctt
ttaatttcCGTTGGCAAATTTTATGGCGATCCCCAAAATCACGTGTCAAG
TATTTTGCTTCTTCGATCACCTGATTTAAATTCGCCAAGATTTTTTCTTG
AGATGGCGAAAGGTTTCTTCGGCCATTCTTCATCAAAGAAGAAACAATTT
CTGCCGAAGCAAATAAGTTGATTTGAATTTGTGTGATGTACGTATTCAAG
TCGTTGTATCTAAAATTGGGGAAATAAGATCAgttataaacatcaaaaca
ccTTTTTAGCGCTGACAGTCACTCCCTTTACTTCCCTTCTACATGTTTTT
ACATCTAACAGAATGATTTAGGGTTCAATNAAAACACCTTTTTGGCGCTG
ACAGTCACTCCCTTTACTTCCCTTCTACATGTTTTACATCTAACAGAATG
ATTTAGGGTTCAATGAAAAGTATGTAGATGAAATTTTACCTCTCTCGGAG
ATTTCTATATGCTTTTCGGACATCAGATCTCTTTGTGATGATATCTAAAA
GAATATCTTCTGCATCATCTTGTATCTGACTGCAAAACATGGGACCACAA
TATCGATATTGATCTTTGTTTCCAACTGCTTCGTCGATCAAATCTTTCAA
CTCGCCCCAGGCTTTCGCGTTGTCGAATTTGGAATTCATTTTCAAGTTTC
GACGAATTTGGAACAAAAGGATGCACCAGAACAAATTTAGTATGCAAAAC
AATCCAATGAAATAGTATTTCTCGCGAATAATCGAAAGAAATAGCGAGAG
CTGATAAAACACAGCCACTCTTCAGAATCAAAATTCCTACctaaatttca
tttcaacacCGCGCGTGTTTTCTTAAAgcgaaaaaaatttgacgtcaata
tTTTAATTGACGTCATTCAAGCTACATATCGACAGCAATGATGACGAAAC
CAAATGGTGGAGAGGATTGTTCATTCTTGGAGACGCAAAGGGGATTTTGG
ACTTGGACTTTTGGGGTTTCTAAGTAACTTTAGCTAATTAATTCCTGTGT
CATATATTGTCATATATTACACGATAAATTTCATATTCAGGAGAAGCCGC
AAACTGCAACAACGACCACCATCAAAGAAACCATAAACCCTGGTGAGGAC
ATTCGCTTCGCTATGCTATGGGATTTTGGTGGAAGTTTGATTTAGATGTT
GAAAAGATTTTAGTTATTTATTAAGTTTTTTATGGGATTTTCCTGAGATT
TTACCTTTATCTTTCTTGCACAGAGAAGCGTGTCAGCAATTTcgattttg
ctattttttccctTGTAAAATTCCTGAGATTTGTCGAGTAACAATGCTCT
GCTTTCTTATTTCAACATTCTTCATCATTCTGATTTCACACAATTCTGGT
GACTTTAATCTGTTCACTATTATTTTCACTAATTGTTGCTAAGCTACTTT
TTTTCCTGCAATTCCTTTGGGCGTATTTTTCACTCCCTTTTGTCTCTTTC
GACAAAGCTAATCTTTCTtttcatatttcattttcagaataCAACGGTGT
TTTCAAAGTGCTTATTGATCGCAAGCAAAGTGCTTTTAAAAGGTTTTGTA
GGCGTGGCGTGGTCAACTTCAAATTATTTTATGTCAGGTAGGTGGAATGT
Tgagtctatatattaatacgcttaaacgtgtgtgtttacaacattttgta
aaaagttttcgcaaatctaacaaagctctacaaagcctcctcttcatggc
gttgaaccatcatctttttgcaccctaagcagatttcctaccactagact
aactttgagaccccaagatactattttctacTCACCAAGTCtttggagct
tgatgggttaaaatcaaccatcttcccaatttttttttctcgttttaaag
aattcttattcttaaaactttctgtttacaatagcggctccctatcactt
tcaaaacttttcaaagtctataaaagtcaccctcgaatgtccaaccacga
tggctagccacgatggctaaaaagatctaaaatatatatacttttgctaa
gccatttatttaattgtggttaaaaattacaatgcaatgttatcttcttt
ctcctttatttcttaaaatcaaaatcaaatcatcacTCGGCGGCTATCTT
TCTTCCGttagaattttttagatgtgtagtgattcactggaatgggacac
gcagcgtgcgacgctgcgcatacggctagttgATTTTAAACGTTCTCAAT
TTACTAACTACAGTGCagtcataactcgaacacgaaCGGGGAATGCAata
aacttgttcgagttgtagaggttcgagttaaagagacgcCACTGTATAAC
CCATAGTGTCCTAGTAGGTTGGTTCCCCaacttgaaaatcgaaaaaagtc
CCTCTTTAGTCCCCCCTaaggttttacaaaaaaatttccccTTTGAAAAT
TGTGTTAAACTTCTCACAAAACCCACATTTAGTATGGAAGTATTATTTTA
AAAGAATACTATGTAACCAAAGAGAAAAAAGATATCGAAACTTGAATCGC
ATTGTATTTGTCCATTAAACTGCTTGCTTTTTTCTGGTTGTAGAGGCTTT
CTGAAGAGTGACAAAGCAATCGGACAAGCGAGCGTCAAATTAACAGGATT
CGCCAACAAATGTGAAATCCACGAATGTGTTGATGTAAGTtcgctttcat
tttcttctccTAAATCTCTTCAAACATTTCCAATCTAAATCGCTGGCCTG
GGACATTCCAAGACAGGACCACGATTCGCTATGCTTGTTCCTTTAATCTT
ACCCAtccaattcaatttttcaatttctctaCATTTTTTCCGTAGATCGT
CGACCTGGAGAAAGGTCGTAAAGCAATTGGTGGGAAGATAGAAATCGTGC
TCAAAATACGCGAACCTTTTGTAGACAAAGATACAGAGATTGTCAACGAG
AAATGGTTGATATTAGATGCACATCTGCGCAAACTCGATATGGTAAGATG
TTAGAAATGCTGTGTGATACCAAGCACTGCGATTTGCTTTGAAATAACAT
TATCTTTCCTTTAAACAAATACTACTTTTCCAGGAGGGAttcgttttatt
ttgattgtGTTTCATTGAtcttccaactttttttttcagaaaacccCATC
AGCAATTCCTCAAGGAAAAGCCGTTAGCGCGTGAGTATagacattttctt
ttcttttgaattatttcaaaataatttacttcTCCCCACCTGCTTAGGTA
TCAGAGATATCCACCAATATGCAATTTTTGACCTCCACCATGAAGAATTC
AAGAAATTTGAGATAGTTCACCAGGCATTTGTCTGTCTGTCTTTTGACCG
GCATCTTTGTTCTGATCTCTAGCCATCCATCGAACGGTCATCAACACATC
AAACTACATTCTTTATGAACGAATCTTTCTTCCGATAATTTTCTCTTTCT
ACTATTTCTTTCTTCTCCATAGAAATTCGAAAGTTTGCGCCATTTCTTGA
ATTCTTATTGGTGGAGCATAATCCATTGCAGAAGTTTTGTTCGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000572	XLOC_000572	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000007	supercontig	sc0000007:249142..255236 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.9371	14.9603	6.43962	7.43637	5.18155	3.52903	7.93638	6.40909	15.8328	19.3394	13.6789	10.3689	13.5831	15.5673	10.2658	15.651	14.558	16.7771	15.7544	15.1839	10.8531	11.5377	11.7571	9.43628	14.4303	7.6901	11.8914	7.34271	9.96025	11.3191

Blast

[Close]

BLAST of TCONS_00000984 vs. Swiss-Prot (Human)
Match: C2D1B (Coiled-coil and C2 domain-containing protein 1B OS=Homo sapiens GN=CC2D1B PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.011e-28
Identity = 57/162 (35.19%), Postives = 96/162 (59.26%), Query Frame = 2

Query:   14 LSDSELEITVVRCLNVPLQQGYQPKDMYTYVTCEMAYXXXXXXXXXXXXXXXXXN-PEYNGVFKVLIDRKQSAFKRFCRRGVVNFKLFYVRGFLKSDKAIGQASVKLTGFANKCEIHECVDIVDLEKGRKAIGGKIEIVLKIREPFVDKDTEIVNEKWLILD 496
            L+ +E+ + +VR +N+P   G  P D+  +V  E  YP       + T + +  N PE++ +FK+ I+R    FKR  +   + F++F+   F +SDK +G A +KL    N+CEI E V+++D   GRK  GGK+E+ +++REP   +D ++V E WL+L+
Sbjct:  696 LNSTEMHLIIVRGMNLPAPPGVTPDDLDAFVRFEFHYPNSDQAQKSKTAVVKNTNSPEFDQLFKLNINRNHRGFKRVIQSKGIKFEIFHKGSFFRSDKLVGTAHLKLERLENECEIREIVEVLD---GRKPTGGKLEVKVRLREPLSGQDVQMVTENWLVLE 854

The following BLAST results are available for this feature:

BLAST of TCONS_00000984 vs. Swiss-Prot (Human)

BLAST of TCONS_00000984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
C2D1B	4.011e-28	35.19	Coiled-coil and C2 domain-containing protein 1B OS...	[more]

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TCONS_00000984 (transcript) - C. hemisphaerica