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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000978 ID=TCONS_00000978|Name=TCONS_00000978|organism=Clytia hemisphaerica|type=transcript|length=1987bpRun BLAST on NCBI transcript from alignment at sc0000007:243363..249930+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000978 ID=TCONS_00000978|Name=TCONS_00000978|organism=Clytia hemisphaerica|type=transcript|length=6568bp|location=Sequence derived from alignment at sc0000007:243363..249930+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000978 vs. Swiss-Prot (Human)
Match: C2D1A (Coiled-coil and C2 domain-containing protein 1A OS=Homo sapiens GN=CC2D1A PE=1 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.773e-37 Identity = 132/411 (32.12%), Postives = 199/411 (48.42%), Query Frame = 2
Query: 830 LNLLLERQKQFKVLALQMKQRGDIDGAKKNLAIAKQFDSVIAAVKEGKEVDLSRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEALEQRLEKYRETGAKAKEEGNSGKVRRMGRIVKQFEAAIKDYKANKPVDFNELPCPPGFGPIPGETQAEEPGDPQ-----EMAQMLIN--------------------APLDGPEEDDTXXXXXXXXXXXXXXXXXXXNPGVSGSRNENQYQFLVTRQKEFKKAALEAKHAGNIDQARDYLRKAKGLDPMIEAASSGLGVDLTTVPSVRPTKGASTQQGSSPTGLREEIKMTGTNNENYVFVETALQRQIEAAEKNTAHYKLMGNLDAAKNFEMLLKNSQKDIMTLQQYKANKSPVPKCFYVKKTFPVTK 1987
L L RQ+ +K+ AL KQ+GD A ++ +AK FD+V+ A+ G+ VDLS P P P P + S P P PS++ P P T+LEALEQR+E+Y+ A+AK +G+ K R RIVKQ++ AI+ +KA + VD ELP PPGF PI G +A +P E A L N AP P+ + P S + P + +R + Q FL R+K+ +AAL AK +++ A+ +LR+AKGL+PM+EA+ +GL VD+T VP K GL +E Y + +++Q E ++ + +GN+ FE L ++ ++ + L+Q P P + ++TF V K
Sbjct: 257 LAQLQSRQRDYKLAALHAKQQGDTTAAARHFRVAKSFDAVLEALSRGEPVDLS-------CLPPPPDQLPPDPPSPPSQPPTPATAPSTTEVPPPPRTLLEALEQRMERYQVAAAQAKSKGDQRKARMHERIVKQYQDAIRAHKAGRAVDVAELPVPPGFPPIQG-LEATKPTQQSLVGVLETAMKLANQDEGPEDEEDEVPKKQNSPVAPTAQPKAPPSRTPQSGSAPTAKAP------PKATSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDITKVPPAPVNKDDFALVQRPGPGLSQEAA------RRYGELTKLIRQQHEMCLNHSNQFTQLGNITETTKFEKLAEDCKRSMDILKQAFVRGLPTPTARFEQRTFSVIK 647 The following BLAST results are available for this feature:
BLAST of TCONS_00000978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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