Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000946 ID=TCONS_00000946|Name=TCONS_00000946|organism=Clytia hemisphaerica|type=transcript|length=2396bp
TATTCATTAAGTGCGGTCTCATTATGTTGTAAAAGTGATCTTCTCCGTAG
ATACTTTTTACcctgaaacaaatatttttattcttctATTGTCGATAAAA
GAAGGAGAGACCTTTAATaagatttttcttcaaaattcattgtAATGCTT
TGTTTTAAAGACACTCTTAACAACATAACCAATCCCACgtggaaaaaaga
taaatacTGTAAAagtttgttatgattttgtCTCTCAATTTTCTGGAAGA
AAACCTCTGAAACTTTGACCATCAAAGAGGGGAGCATGTATAGGACTTTT
CGAATACCACAATTGGCTTTTCTGGGAGCAGGAACATTAGCTGAGACTTT
GACTAAAGGATTCATTGCAGCTGGGGCTTTGCAAATCAACCAAATATGGG
CGAGTGCACCTTCGGATACTCACGTCATGAAACTCGGATGCAAAACAACC
ACCGACAACGTTAAATTAGTGAAGGAAAACAAACTTGTAGCGCTCTCCGT
AAAGCCTCAAGTGCTTCCCAAAGTTTTAAGAGAAATTTCACCGCACATCA
CACCAGACCATCTACTTCTATCTTTTGCTGCAGGGATGAAGATCCGTAAC
ATGCAATATTTGCTTCCACCAAAGACTCGAATAGCCCGTCTGATGACCAA
CACACCCACGCAATTTCGTGAGGGCGTTTCGAGTTTCGCCCTTGGTCCTC
ACTGTCGCGAAGCGGATCGAAAACTGATACAAGACTTGATGAGCACGGTT
GGTTATTGCACTGAAGTGAAAGAGAACTTATTGGATGTGGTGACCGGGTT
TGCAGGTGGCGGACCCGCTTATGCCTACTGTTTCATCGAAGCCATCGCAG
ACGCGGCTGTTTTAGGAGGAATGACGCGAGAAGAGGCAATGAAAATGGCG
GCTAAATCCGTTCTCGGTGCCGCCCGTATGGTTGAGGAGACTGGAGACCA
TCCAGGCAAGTTAAAAGATGATGTTTGTTCAGCAGGTGGCAGTACCATTC
GAGGTATCCATGCATTAGAGAAAGGGCGCATGCGCTCTGCTGTCATCGAC
GCTGTGAATGCTGCCACCGAAAGATCCAGTGAGCTCGGCAAAATATTGAA
TGAACAAGGATcgtcaaacaaaatcttttgattgacaGGGAAATAAATAG
CTGAAATATTTGGAATTTAGTATAGGGGATAactattgtaaattttttat
aaaaatgacaCACATTTTAATACAATTGTATAGCACTTGGCgattagaaa
ttttttaaaggaTAACCACGAAAGTATTTCTTCGTCGACATTCTTTCCTT
TCGAACAAAGCCAATTTTTNATAACAATGACACACATTTTAATACAATTG
TACAGCACTTGACgattagaaattttttaaaggaTAACCACAGTAAGCAA
CTTAAGTAGAACTCTAGTAGAAGCCGTAAAATACGGTTCGAAATTAACAA
GGTCCAGTCGTAAAACATCTTTGAACCAATGTCATGACAATATTTTGGGA
TATAAAAAGGAATATTACAGGGCGATTTGTTATGTTACATACTAATGTAT
CTTTACTAAAGAAAGAACCTTTTACAGATTTTATATTACGACAGTATAAA
TTGATTTAAACCTAATTTGTAATTCAACGCGTTTTTACTAGTGACATAAc
gtgaaaaaatgaaacaaaaataaaacgttTTAACGTTAAACTCAATCCGA
CCCGTTCGAAAGCCACCCTCTGGAAAAGAATTCGTTTAGAAGACGAGATG
TTTTAAAGCTACTCGAGACTAAAAAGTGGTGAAGGCTACCGCTATctaat
ttcaaatggggataatTCAAGAGCTAACAACATGCAACATGTCACATTTA
GTATAACCGTATAAcatcaaaaaataacaaaaagtttaactaCAAAAATG
ATAATTCGGCCGTTTCGTTGAACAGACGATATGCAAAGAGAAGTATTAGC
AGGTTCAAAATAGTTTATTTATCAATCAGAATTCTAATCAACAGGTATAC
TTCGTGTACGAATTTTTCAACATCGGAAAATACTACCACGACTATTGGTA
AACCCAAACAATAAGctagttattttttttcttcatgtaAGATTAAGATT
AACTCAGCTCTGATACTAAACCTTGCAATGACTATGATACTAAACCTTGC
AATGACTATGATACGTAACATCAAAAAACTCATTGTGTATAAAACTAGAA
TCTTTGAATAtaatgcaaaaaattaaaagttgttGGTTTAAACCACCGGT
CAACGAGTGACAATAAAAACTACTTAACACACCATACGTTAGTCGTCCAT
GAAAGTATTATCTTCAGTCAAGAGGTCGCTTGTGTTCATCATCTCACTGT
CAGGGTCATCACGACGTgtgtaaaataataaatatgcCGCCTTTGA Run BLAST on NCBI protein sequence of TCONS_00000946-protein >TCONS_00000946-protein ID=TCONS_00000946-protein|Name=TCONS_00000946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MYRTFRIPQLAFLGAGTLAETLTKGFIAAGALQINQIWASAPSDTHVMKL
GCKTTTDNVKLVKENKLVALSVKPQVLPKVLREISPHITPDHLLLSFAAG
MKIRNMQYLLPPKTRIARLMTNTPTQFREGVSSFALGPHCREADRKLIQD
LMSTVGYCTEVKENLLDVVTGFAGGGPAYAYCFIEAIADAAVLGGMTREE
AMKMAAKSVLGAARMVEETGDHPGKLKDDVCSAGGSTIRGIHALEKGRMR
SAVIDAVNAATERSSELGKILNEQGSSNKIF Run BLAST on NCBI transcript from alignment at sc0000007:159551..162076+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000946 ID=TCONS_00000946|Name=TCONS_00000946|organism=Clytia hemisphaerica|type=transcript|length=2526bp|location=Sequence derived from alignment at sc0000007:159551..162076+ (Clytia hemisphaerica)
TATTCATTAAGTGCGGTCTCATTATGTTGTAAAAGTGATCTTCTCCGTAG
ATACTTTTTACcctgaaacaaatatttttattcttctATTGTCGATAAAA
GAAGGAGAGACCTTTAATaagatttttcttcaaaattcattgtAATGCTT
TGTTTTAAAGACACTCTTAACAACATAACCAATCCCACgtggaaaaaaga
taaatacTGTAAAagtttgttatgattttgtCTCTCAATTTTCTGGAAGA
AAACCTCTGAAACTTTGACCATCAAAGAGGGGAGCATGTATAGGACTTTT
CGAATACCACAATTGGCTTTTCTGGGAGCAGGAACATTAGCTGAGACTTT
GACTAAAGGATTCATTGCAGCTGGGGCTTTGCAAATCAACCAAATATGGG
CGAGTGCACCTTCGGATACTCACGTCATGAAACTCGGATGCAAAACAACC
ACCGACAACGTTAAATTAGTGAAGGAAAACAAACTTGTAGCGCTCTCCGT
AAAGCCTCAAGTGCTTCCCAAAGTTTTAAGAGAAATTTCACCGCACATCA
CACCAGACCATCTACTTCTATCTTTTGCTGCAGGTAAACAAATATTCTAG
TTTTATCAAGACTCTGTAGATTTAAGGCTGCAAACCTTAGCTTAACCAAA
CCGAATTATGAAAATCTGTTCTagtaaaaaagtgtaaaatctATTTCCTT
TTGTCTATTTCAGGGATGAAGATCCGTAACATGCAATATTTGCTTCCACC
AAAGACTCGAATAGCCCGTCTGATGACCAACACACCCACGCAATTTCGTG
AGGGCGTTTCGAGTTTCGCCCTTGGTCCTCACTGTCGCGAAGCGGATCGA
AAACTGATACAAGACTTGATGAGCACGGTTGGTTATTGCACTGAAGTGAA
AGAGAACTTATTGGATGTGGTGACCGGGTTTGCAGGTGGCGGACCCGCTT
ATGCCTACTGTTTCATCGAAGCCATCGCAGACGCGGCTGTTTTAGGAGGA
ATGACGCGAGAAGAGGCAATGAAAATGGCGGCTAAATCCGTTCTCGGTGC
CGCCCGTATGGTTGAGGAGACTGGAGACCATCCAGGCAAGTTAAAAGATG
ATGTTTGTTCAGCAGGTGGCAGTACCATTCGAGGTATCCATGCATTAGAG
AAAGGGCGCATGCGCTCTGCTGTCATCGACGCTGTGAATGCTGCCACCGA
AAGATCCAGTGAGCTCGGCAAAATATTGAATGAACAAGGATcgtcaaaca
aaatcttttgattgacaGGGAAATAAATAGCTGAAATATTTGGAATTTAG
TATAGGGGATAactattgtaaattttttataaaaatgacaCACATTTTAA
TACAATTGTATAGCACTTGGCgattagaaattttttaaaggaTAACCACG
AAAGTATTTCTTCGTCGACATTCTTTCCTTTCGAACAAAGCCAATTTTTN
ATAACAATGACACACATTTTAATACAATTGTACAGCACTTGACgattaga
aattttttaaaggaTAACCACAGTAAGCAACTTAAGTAGAACTCTAGTAG
AAGCCGTAAAATACGGTTCGAAATTAACAAGGTCCAGTCGTAAAACATCT
TTGAACCAATGTCATGACAATATTTTGGGATATAAAAAGGAATATTACAG
GGCGATTTGTTATGTTACATACTAATGTATCTTTACTAAAGAAAGAACCT
TTTACAGATTTTATATTACGACAGTATAAATTGATTTAAACCTAATTTGT
AATTCAACGCGTTTTTACTAGTGACATAAcgtgaaaaaatgaaacaaaaa
taaaacgttTTAACGTTAAACTCAATCCGACCCGTTCGAAAGCCACCCTC
TGGAAAAGAATTCGTTTAGAAGACGAGATGTTTTAAAGCTACTCGAGACT
AAAAAGTGGTGAAGGCTACCGCTATctaatttcaaatggggataatTCAA
GAGCTAACAACATGCAACATGTCACATTTAGTATAACCGTATAAcatcaa
aaaataacaaaaagtttaactaCAAAAATGATAATTCGGCCGTTTCGTTG
AACAGACGATATGCAAAGAGAAGTATTAGCAGGTTCAAAATAGTTTATTT
ATCAATCAGAATTCTAATCAACAGGTATACTTCGTGTACGAATTTTTCAA
CATCGGAAAATACTACCACGACTATTGGTAAACCCAAACAATAAGctagt
tattttttttcttcatgtaAGATTAAGATTAACTCAGCTCTGATACTAAA
CCTTGCAATGACTATGATACTAAACCTTGCAATGACTATGATACGTAACA
TCAAAAAACTCATTGTGTATAAAACTAGAATCTTTGAATAtaatgcaaaa
aattaaaagttgttGGTTTAAACCACCGGTCAACGAGTGACAATAAAAAC
TACTTAACACACCATACGTTAGTCGTCCATGAAAGTATTATCTTCAGTCA
AGAGGTCGCTTGTGTTCATCATCTCACTGTCAGGGTCATCACGACGTgtg
taaaataataaatatgcCGCCTTTGA Coding sequence (CDS) from alignment at sc0000007:159551..162076+ >TCONS_00000946 ID=TCONS_00000946|Name=TCONS_00000946|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0000007:159551..162076+ (Clytia hemisphaerica)
ATGTATAGGACTTTTCGAATACCACAATTGGCTTTTCTGGGAGCAGGAAC
ATTAGCTGAGACTTTGACTAAAGGATTCATTGCAGCTGGGGCTTTGCAAA
TCAACCAAATATGGGCGAGTGCACCTTCGGATACTCACGTCATGAAACTC
GGATGCAAAACAACCACCGACAACGTTAAATTAGTGAAGGAAAACAAACT
TGTAGCGCTCTCCGTAAAGCCTCAAGTGCTTCCCAAAGTTTTAAGAGAAA
TTTCACCGCACATCACACCAGACCATCTACTTCTATCTTTTGCTGCAGGG
ATGAAGATCCGTAACATGCAATATTTGCTTCCACCAAAGACTCGAATAGC
CCGTCTGATGACCAACACACCCACGCAATTTCGTGAGGGCGTTTCGAGTT
TCGCCCTTGGTCCTCACTGTCGCGAAGCGGATCGAAAACTGATACAAGAC
TTGATGAGCACGGTTGGTTATTGCACTGAAGTGAAAGAGAACTTATTGGA
TGTGGTGACCGGGTTTGCAGGTGGCGGACCCGCTTATGCCTACTGTTTCA
TCGAAGCCATCGCAGACGCGGCTGTTTTAGGAGGAATGACGCGAGAAGAG
GCAATGAAAATGGCGGCTAAATCCGTTCTCGGTGCCGCCCGTATGGTTGA
GGAGACTGGAGACCATCCAGGCAAGTTAAAAGATGATGTTTGTTCAGCAG
GTGGCAGTACCATTCGAGGTATCCATGCATTAGAGAAAGGGCGCATGCGC
TCTGCTGTCATCGACGCTGTGAATGCTGCCACCGAAAGATCCAGTGAGCT
CGGCAAAATATTGAATGAACAAGGATcgtcaaacaaaatcttttgaATGT
ATAGGACTTTTCGAATACCACAATTGGCTTTTCTGGGAGCAGGAACATTA
GCTGAGACTTTGACTAAAGGATTCATTGCAGCTGGGGCTTTGCAAATCAA
CCAAATATGGGCGAGTGCACCTTCGGATACTCACGTCATGAAACTCGGAT
GCAAAACAACCACCGACAACGTTAAATTAGTGAAGGAAAACAAACTTGTA
GCGCTCTCCGTAAAGCCTCAAGTGCTTCCCAAAGTTTTAAGAGAAATTTC
ACCGCACATCACACCAGACCATCTACTTCTATCTTTTGCTGCAGGGATGA
AGATCCGTAACATGCAATATTTGCTTCCACCAAAGACTCGAATAGCCCGT
CTGATGACCAACACACCCACGCAATTTCGTGAGGGCGTTTCGAGTTTCGC
CCTTGGTCCTCACTGTCGCGAAGCGGATCGAAAACTGATACAAGACTTGA
TGAGCACGGTTGGTTATTGCACTGAAGTGAAAGAGAACTTATTGGATGTG
GTGACCGGGTTTGCAGGTGGCGGACCCGCTTATGCCTACTGTTTCATCGA
AGCCATCGCAGACGCGGCTGTTTTAGGAGGAATGACGCGAGAAGAGGCAA
TGAAAATGGCGGCTAAATCCGTTCTCGGTGCCGCCCGTATGGTTGAGGAG
ACTGGAGACCATCCAGGCAAGTTAAAAGATGATGTTTGTTCAGCAGGTGG
CAGTACCATTCGAGGTATCCATGCATTAGAGAAAGGGCGCATGCGCTCTG
CTGTCATCGACGCTGTGAATGCTGCCACCGAAAGATCCAGTGAGCTCGGC
AAAATATTGAATGAACAAGGATcgtcaaacaaaatcttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000946-exon-sc0000007-1491911889:159551..160133 | TCONS_00000946-exon-sc0000007-1491911889:159551..160133 | Clytia hemisphaerica | exon |
| TCONS_00000946-exon-sc0000007-1510915933:159551..160133 | TCONS_00000946-exon-sc0000007-1510915933:159551..160133 | Clytia hemisphaerica | exon |
| TCONS_00000946-exon-sc0000007-1575043694:159551..160133 | TCONS_00000946-exon-sc0000007-1575043694:159551..160133 | Clytia hemisphaerica | exon |
| TCONS_00000946-exon-sc0000007-1491911889:160264..162076 | TCONS_00000946-exon-sc0000007-1491911889:160264..162076 | Clytia hemisphaerica | exon |
| TCONS_00000946-exon-sc0000007-1510915933:160264..162076 | TCONS_00000946-exon-sc0000007-1510915933:160264..162076 | Clytia hemisphaerica | exon |
| TCONS_00000946-exon-sc0000007-1575043694:160264..162076 | TCONS_00000946-exon-sc0000007-1575043694:160264..162076 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:159551..162076 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004735 | pyrroline-5-carboxylate reductase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006561 | proline biosynthetic process |
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0006561 |
proline biosynthetic process |
| molecular_function |
GO:0004735 |
pyrroline-5-carboxylate reductase activity |
Blast
BLAST of TCONS_00000946 vs. Swiss-Prot (Human)
Match: P5CR3 (Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCR3 PE=1 SV=3) HSP 1 Score: 223.787 bits (569), Expect = 2.898e-66 Identity = 111/264 (42.05%), Postives = 168/264 (63.64%), Query Frame = 1 Query: 310 QLAFLGAGTLAETLTKGFIAAGALQINQIWASAPSD---THVMKLGCKTTTDNVKLVKENKLVALSVKPQVLPKVLREISPHITPDHLLLSFAAGMKIRNMQYLLPPKTRIARLMTNTPTQFREGVSSFALGPHCREADRKLIQDLMSTVGYCTEVKENLLDVVTGFAGGGPAYAYCFIEAIADAAVLGGMTREEAMKMAAKSVLGAARMVEETGDHPGKLKDDVCSAGGSTIRGIHALEKGRMRSAVIDAVNAATERSSELGK 1092
++ F+GAG +A + +G I AG ++ I ASAP+D H LGC+TT N ++++ LV + KP VLP VL E++P +T +H+L+S AAG+ + ++ LLPP TR+ R++ N P +EG A G H ++ KL+Q L+ G C EV E +D+ TG +G G A+ F EA+A+ AV GM A ++AA+++LG A+M+ G HP +L+ DVC+ GG+TI G+HALE+G +R+A + AV AAT R+ EL +
Sbjct: 10 RVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCHFQALGCRTTHSNQEVLQSCLLVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAGVSLSTLEELLPPNTRVLRVLPNLPCVVQEGAIVMARGRHVGSSETKLLQHLLEACGRCEEVPEAYVDIHTGLSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKMLLHEGQHPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRAKELSR 273
The following BLAST results are available for this feature:
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