TCONS_00000946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000946
Unique NameTCONS_00000946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000946 ID=TCONS_00000946|Name=TCONS_00000946|organism=Clytia hemisphaerica|type=transcript|length=2396bp
TATTCATTAAGTGCGGTCTCATTATGTTGTAAAAGTGATCTTCTCCGTAG
ATACTTTTTACcctgaaacaaatatttttattcttctATTGTCGATAAAA
GAAGGAGAGACCTTTAATaagatttttcttcaaaattcattgtAATGCTT
TGTTTTAAAGACACTCTTAACAACATAACCAATCCCACgtggaaaaaaga
taaatacTGTAAAagtttgttatgattttgtCTCTCAATTTTCTGGAAGA
AAACCTCTGAAACTTTGACCATCAAAGAGGGGAGCATGTATAGGACTTTT
CGAATACCACAATTGGCTTTTCTGGGAGCAGGAACATTAGCTGAGACTTT
GACTAAAGGATTCATTGCAGCTGGGGCTTTGCAAATCAACCAAATATGGG
CGAGTGCACCTTCGGATACTCACGTCATGAAACTCGGATGCAAAACAACC
ACCGACAACGTTAAATTAGTGAAGGAAAACAAACTTGTAGCGCTCTCCGT
AAAGCCTCAAGTGCTTCCCAAAGTTTTAAGAGAAATTTCACCGCACATCA
CACCAGACCATCTACTTCTATCTTTTGCTGCAGGGATGAAGATCCGTAAC
ATGCAATATTTGCTTCCACCAAAGACTCGAATAGCCCGTCTGATGACCAA
CACACCCACGCAATTTCGTGAGGGCGTTTCGAGTTTCGCCCTTGGTCCTC
ACTGTCGCGAAGCGGATCGAAAACTGATACAAGACTTGATGAGCACGGTT
GGTTATTGCACTGAAGTGAAAGAGAACTTATTGGATGTGGTGACCGGGTT
TGCAGGTGGCGGACCCGCTTATGCCTACTGTTTCATCGAAGCCATCGCAG
ACGCGGCTGTTTTAGGAGGAATGACGCGAGAAGAGGCAATGAAAATGGCG
GCTAAATCCGTTCTCGGTGCCGCCCGTATGGTTGAGGAGACTGGAGACCA
TCCAGGCAAGTTAAAAGATGATGTTTGTTCAGCAGGTGGCAGTACCATTC
GAGGTATCCATGCATTAGAGAAAGGGCGCATGCGCTCTGCTGTCATCGAC
GCTGTGAATGCTGCCACCGAAAGATCCAGTGAGCTCGGCAAAATATTGAA
TGAACAAGGATcgtcaaacaaaatcttttgattgacaGGGAAATAAATAG
CTGAAATATTTGGAATTTAGTATAGGGGATAactattgtaaattttttat
aaaaatgacaCACATTTTAATACAATTGTATAGCACTTGGCgattagaaa
ttttttaaaggaTAACCACGAAAGTATTTCTTCGTCGACATTCTTTCCTT
TCGAACAAAGCCAATTTTTNATAACAATGACACACATTTTAATACAATTG
TACAGCACTTGACgattagaaattttttaaaggaTAACCACAGTAAGCAA
CTTAAGTAGAACTCTAGTAGAAGCCGTAAAATACGGTTCGAAATTAACAA
GGTCCAGTCGTAAAACATCTTTGAACCAATGTCATGACAATATTTTGGGA
TATAAAAAGGAATATTACAGGGCGATTTGTTATGTTACATACTAATGTAT
CTTTACTAAAGAAAGAACCTTTTACAGATTTTATATTACGACAGTATAAA
TTGATTTAAACCTAATTTGTAATTCAACGCGTTTTTACTAGTGACATAAc
gtgaaaaaatgaaacaaaaataaaacgttTTAACGTTAAACTCAATCCGA
CCCGTTCGAAAGCCACCCTCTGGAAAAGAATTCGTTTAGAAGACGAGATG
TTTTAAAGCTACTCGAGACTAAAAAGTGGTGAAGGCTACCGCTATctaat
ttcaaatggggataatTCAAGAGCTAACAACATGCAACATGTCACATTTA
GTATAACCGTATAAcatcaaaaaataacaaaaagtttaactaCAAAAATG
ATAATTCGGCCGTTTCGTTGAACAGACGATATGCAAAGAGAAGTATTAGC
AGGTTCAAAATAGTTTATTTATCAATCAGAATTCTAATCAACAGGTATAC
TTCGTGTACGAATTTTTCAACATCGGAAAATACTACCACGACTATTGGTA
AACCCAAACAATAAGctagttattttttttcttcatgtaAGATTAAGATT
AACTCAGCTCTGATACTAAACCTTGCAATGACTATGATACTAAACCTTGC
AATGACTATGATACGTAACATCAAAAAACTCATTGTGTATAAAACTAGAA
TCTTTGAATAtaatgcaaaaaattaaaagttgttGGTTTAAACCACCGGT
CAACGAGTGACAATAAAAACTACTTAACACACCATACGTTAGTCGTCCAT
GAAAGTATTATCTTCAGTCAAGAGGTCGCTTGTGTTCATCATCTCACTGT
CAGGGTCATCACGACGTgtgtaaaataataaatatgcCGCCTTTGA
Run BLAST on NCBI

protein sequence of TCONS_00000946-protein

>TCONS_00000946-protein ID=TCONS_00000946-protein|Name=TCONS_00000946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MYRTFRIPQLAFLGAGTLAETLTKGFIAAGALQINQIWASAPSDTHVMKL
GCKTTTDNVKLVKENKLVALSVKPQVLPKVLREISPHITPDHLLLSFAAG
MKIRNMQYLLPPKTRIARLMTNTPTQFREGVSSFALGPHCREADRKLIQD
LMSTVGYCTEVKENLLDVVTGFAGGGPAYAYCFIEAIADAAVLGGMTREE
AMKMAAKSVLGAARMVEETGDHPGKLKDDVCSAGGSTIRGIHALEKGRMR
SAVIDAVNAATERSSELGKILNEQGSSNKIF
Run BLAST on NCBI

transcript from alignment at sc0000007:159551..162076+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000946 ID=TCONS_00000946|Name=TCONS_00000946|organism=Clytia hemisphaerica|type=transcript|length=2526bp|location=Sequence derived from alignment at sc0000007:159551..162076+ (Clytia hemisphaerica)
TATTCATTAAGTGCGGTCTCATTATGTTGTAAAAGTGATCTTCTCCGTAG
ATACTTTTTACcctgaaacaaatatttttattcttctATTGTCGATAAAA
GAAGGAGAGACCTTTAATaagatttttcttcaaaattcattgtAATGCTT
TGTTTTAAAGACACTCTTAACAACATAACCAATCCCACgtggaaaaaaga
taaatacTGTAAAagtttgttatgattttgtCTCTCAATTTTCTGGAAGA
AAACCTCTGAAACTTTGACCATCAAAGAGGGGAGCATGTATAGGACTTTT
CGAATACCACAATTGGCTTTTCTGGGAGCAGGAACATTAGCTGAGACTTT
GACTAAAGGATTCATTGCAGCTGGGGCTTTGCAAATCAACCAAATATGGG
CGAGTGCACCTTCGGATACTCACGTCATGAAACTCGGATGCAAAACAACC
ACCGACAACGTTAAATTAGTGAAGGAAAACAAACTTGTAGCGCTCTCCGT
AAAGCCTCAAGTGCTTCCCAAAGTTTTAAGAGAAATTTCACCGCACATCA
CACCAGACCATCTACTTCTATCTTTTGCTGCAGGTAAACAAATATTCTAG
TTTTATCAAGACTCTGTAGATTTAAGGCTGCAAACCTTAGCTTAACCAAA
CCGAATTATGAAAATCTGTTCTagtaaaaaagtgtaaaatctATTTCCTT
TTGTCTATTTCAGGGATGAAGATCCGTAACATGCAATATTTGCTTCCACC
AAAGACTCGAATAGCCCGTCTGATGACCAACACACCCACGCAATTTCGTG
AGGGCGTTTCGAGTTTCGCCCTTGGTCCTCACTGTCGCGAAGCGGATCGA
AAACTGATACAAGACTTGATGAGCACGGTTGGTTATTGCACTGAAGTGAA
AGAGAACTTATTGGATGTGGTGACCGGGTTTGCAGGTGGCGGACCCGCTT
ATGCCTACTGTTTCATCGAAGCCATCGCAGACGCGGCTGTTTTAGGAGGA
ATGACGCGAGAAGAGGCAATGAAAATGGCGGCTAAATCCGTTCTCGGTGC
CGCCCGTATGGTTGAGGAGACTGGAGACCATCCAGGCAAGTTAAAAGATG
ATGTTTGTTCAGCAGGTGGCAGTACCATTCGAGGTATCCATGCATTAGAG
AAAGGGCGCATGCGCTCTGCTGTCATCGACGCTGTGAATGCTGCCACCGA
AAGATCCAGTGAGCTCGGCAAAATATTGAATGAACAAGGATcgtcaaaca
aaatcttttgattgacaGGGAAATAAATAGCTGAAATATTTGGAATTTAG
TATAGGGGATAactattgtaaattttttataaaaatgacaCACATTTTAA
TACAATTGTATAGCACTTGGCgattagaaattttttaaaggaTAACCACG
AAAGTATTTCTTCGTCGACATTCTTTCCTTTCGAACAAAGCCAATTTTTN
ATAACAATGACACACATTTTAATACAATTGTACAGCACTTGACgattaga
aattttttaaaggaTAACCACAGTAAGCAACTTAAGTAGAACTCTAGTAG
AAGCCGTAAAATACGGTTCGAAATTAACAAGGTCCAGTCGTAAAACATCT
TTGAACCAATGTCATGACAATATTTTGGGATATAAAAAGGAATATTACAG
GGCGATTTGTTATGTTACATACTAATGTATCTTTACTAAAGAAAGAACCT
TTTACAGATTTTATATTACGACAGTATAAATTGATTTAAACCTAATTTGT
AATTCAACGCGTTTTTACTAGTGACATAAcgtgaaaaaatgaaacaaaaa
taaaacgttTTAACGTTAAACTCAATCCGACCCGTTCGAAAGCCACCCTC
TGGAAAAGAATTCGTTTAGAAGACGAGATGTTTTAAAGCTACTCGAGACT
AAAAAGTGGTGAAGGCTACCGCTATctaatttcaaatggggataatTCAA
GAGCTAACAACATGCAACATGTCACATTTAGTATAACCGTATAAcatcaa
aaaataacaaaaagtttaactaCAAAAATGATAATTCGGCCGTTTCGTTG
AACAGACGATATGCAAAGAGAAGTATTAGCAGGTTCAAAATAGTTTATTT
ATCAATCAGAATTCTAATCAACAGGTATACTTCGTGTACGAATTTTTCAA
CATCGGAAAATACTACCACGACTATTGGTAAACCCAAACAATAAGctagt
tattttttttcttcatgtaAGATTAAGATTAACTCAGCTCTGATACTAAA
CCTTGCAATGACTATGATACTAAACCTTGCAATGACTATGATACGTAACA
TCAAAAAACTCATTGTGTATAAAACTAGAATCTTTGAATAtaatgcaaaa
aattaaaagttgttGGTTTAAACCACCGGTCAACGAGTGACAATAAAAAC
TACTTAACACACCATACGTTAGTCGTCCATGAAAGTATTATCTTCAGTCA
AGAGGTCGCTTGTGTTCATCATCTCACTGTCAGGGTCATCACGACGTgtg
taaaataataaatatgcCGCCTTTGA

Coding sequence (CDS) from alignment at sc0000007:159551..162076+

>TCONS_00000946 ID=TCONS_00000946|Name=TCONS_00000946|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0000007:159551..162076+ (Clytia hemisphaerica)
ATGTATAGGACTTTTCGAATACCACAATTGGCTTTTCTGGGAGCAGGAAC
ATTAGCTGAGACTTTGACTAAAGGATTCATTGCAGCTGGGGCTTTGCAAA
TCAACCAAATATGGGCGAGTGCACCTTCGGATACTCACGTCATGAAACTC
GGATGCAAAACAACCACCGACAACGTTAAATTAGTGAAGGAAAACAAACT
TGTAGCGCTCTCCGTAAAGCCTCAAGTGCTTCCCAAAGTTTTAAGAGAAA
TTTCACCGCACATCACACCAGACCATCTACTTCTATCTTTTGCTGCAGGG
ATGAAGATCCGTAACATGCAATATTTGCTTCCACCAAAGACTCGAATAGC
CCGTCTGATGACCAACACACCCACGCAATTTCGTGAGGGCGTTTCGAGTT
TCGCCCTTGGTCCTCACTGTCGCGAAGCGGATCGAAAACTGATACAAGAC
TTGATGAGCACGGTTGGTTATTGCACTGAAGTGAAAGAGAACTTATTGGA
TGTGGTGACCGGGTTTGCAGGTGGCGGACCCGCTTATGCCTACTGTTTCA
TCGAAGCCATCGCAGACGCGGCTGTTTTAGGAGGAATGACGCGAGAAGAG
GCAATGAAAATGGCGGCTAAATCCGTTCTCGGTGCCGCCCGTATGGTTGA
GGAGACTGGAGACCATCCAGGCAAGTTAAAAGATGATGTTTGTTCAGCAG
GTGGCAGTACCATTCGAGGTATCCATGCATTAGAGAAAGGGCGCATGCGC
TCTGCTGTCATCGACGCTGTGAATGCTGCCACCGAAAGATCCAGTGAGCT
CGGCAAAATATTGAATGAACAAGGATcgtcaaacaaaatcttttgaATGT
ATAGGACTTTTCGAATACCACAATTGGCTTTTCTGGGAGCAGGAACATTA
GCTGAGACTTTGACTAAAGGATTCATTGCAGCTGGGGCTTTGCAAATCAA
CCAAATATGGGCGAGTGCACCTTCGGATACTCACGTCATGAAACTCGGAT
GCAAAACAACCACCGACAACGTTAAATTAGTGAAGGAAAACAAACTTGTA
GCGCTCTCCGTAAAGCCTCAAGTGCTTCCCAAAGTTTTAAGAGAAATTTC
ACCGCACATCACACCAGACCATCTACTTCTATCTTTTGCTGCAGGGATGA
AGATCCGTAACATGCAATATTTGCTTCCACCAAAGACTCGAATAGCCCGT
CTGATGACCAACACACCCACGCAATTTCGTGAGGGCGTTTCGAGTTTCGC
CCTTGGTCCTCACTGTCGCGAAGCGGATCGAAAACTGATACAAGACTTGA
TGAGCACGGTTGGTTATTGCACTGAAGTGAAAGAGAACTTATTGGATGTG
GTGACCGGGTTTGCAGGTGGCGGACCCGCTTATGCCTACTGTTTCATCGA
AGCCATCGCAGACGCGGCTGTTTTAGGAGGAATGACGCGAGAAGAGGCAA
TGAAAATGGCGGCTAAATCCGTTCTCGGTGCCGCCCGTATGGTTGAGGAG
ACTGGAGACCATCCAGGCAAGTTAAAAGATGATGTTTGTTCAGCAGGTGG
CAGTACCATTCGAGGTATCCATGCATTAGAGAAAGGGCGCATGCGCTCTG
CTGTCATCGACGCTGTGAATGCTGCCACCGAAAGATCCAGTGAGCTCGGC
AAAATATTGAATGAACAAGGATcgtcaaacaaaatcttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000570XLOC_000570Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000946-proteinTCONS_00000946-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000946-exon-sc0000007-1491911889:159551..160133TCONS_00000946-exon-sc0000007-1491911889:159551..160133Clytia hemisphaericaexon
TCONS_00000946-exon-sc0000007-1510915933:159551..160133TCONS_00000946-exon-sc0000007-1510915933:159551..160133Clytia hemisphaericaexon
TCONS_00000946-exon-sc0000007-1575043694:159551..160133TCONS_00000946-exon-sc0000007-1575043694:159551..160133Clytia hemisphaericaexon
TCONS_00000946-exon-sc0000007-1491911889:160264..162076TCONS_00000946-exon-sc0000007-1491911889:160264..162076Clytia hemisphaericaexon
TCONS_00000946-exon-sc0000007-1510915933:160264..162076TCONS_00000946-exon-sc0000007-1510915933:160264..162076Clytia hemisphaericaexon
TCONS_00000946-exon-sc0000007-1575043694:160264..162076TCONS_00000946-exon-sc0000007-1575043694:160264..162076Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:159551..162076 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
166.784	172.445	95.1988	70.9901	198.353	151.359	129.618	136.095	67.0317	91.3372	38.3456	47.1143	6.01655	6.6291	10.583	16.2157	6.00448	4.37628	0.750496	0.242495	3.5565	4.15038	24.6026	18.8883	1.03062	0.910516	26.9033	7.99961	3.21711	4.98743
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028939P5C_Rdtase_cat_N
IPR000304Pyrroline-COOH_reductase
IPR029036P5CR_dimer
IPR0089276-PGluconate_DH_C-like
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004735pyrroline-5-carboxylate reductase activity
Vocabulary: Biological Process
TermDefinition
GO:0006561proline biosynthetic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006561 proline biosynthetic process
molecular_function GO:0004735 pyrroline-5-carboxylate reductase activity
Blast
[Close]
BLAST of TCONS_00000946 vs. Swiss-Prot (Human)
Match: P5CR3 (Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCR3 PE=1 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 2.898e-66
Identity = 111/264 (42.05%), Postives = 168/264 (63.64%), Query Frame = 1 
Query:  310 QLAFLGAGTLAETLTKGFIAAGALQINQIWASAPSD---THVMKLGCKTTTDNVKLVKENKLVALSVKPQVLPKVLREISPHITPDHLLLSFAAGMKIRNMQYLLPPKTRIARLMTNTPTQFREGVSSFALGPHCREADRKLIQDLMSTVGYCTEVKENLLDVVTGFAGGGPAYAYCFIEAIADAAVLGGMTREEAMKMAAKSVLGAARMVEETGDHPGKLKDDVCSAGGSTIRGIHALEKGRMRSAVIDAVNAATERSSELGK 1092
            ++ F+GAG +A  + +G I AG ++   I ASAP+D    H   LGC+TT  N ++++   LV  + KP VLP VL E++P +T +H+L+S AAG+ +  ++ LLPP TR+ R++ N P   +EG    A G H   ++ KL+Q L+   G C EV E  +D+ TG +G G A+   F EA+A+ AV  GM    A ++AA+++LG A+M+   G HP +L+ DVC+ GG+TI G+HALE+G +R+A + AV AAT R+ EL +
Sbjct:   10 RVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCHFQALGCRTTHSNQEVLQSCLLVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAGVSLSTLEELLPPNTRVLRVLPNLPCVVQEGAIVMARGRHVGSSETKLLQHLLEACGRCEEVPEAYVDIHTGLSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKMLLHEGQHPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRAKELSR 273
The following BLAST results are available for this feature:
BLAST of TCONS_00000946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P5CR32.898e-6642.05Pyrroline-5-carboxylate reductase 3 OS=Homo sapien... [more]
back to top