TCONS_00000943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000943
Unique NameTCONS_00000943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1039

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000943 ID=TCONS_00000943|Name=TCONS_00000943|organism=Clytia hemisphaerica|type=transcript|length=1039bp
TTTACCCAGGTTagtaaagtttaaaaatttgCCTGTTATAAAGTTTATTG
AGTAGGGGAAGTATTTGCCAATATGATGCTACTGTCATTTTCTCTTCTTG
TGATTACTTTAAAATCAATAACATCAGAatttagaaaaagaagatggtgt
tatatattttgttggAATATATTCAACATGTTACCATAGGTTGAACAGAA
CCAGTGAAAATGCTTTTTGTCAGTATACTGACGAATTCCTGAGATACAAA
ATTCAATCAACAAAGGAATTATCACTAGAAGAAAACCGATACCCACAAGT
TCAATATGTTGGTTATGACGTTTGTGATGATTTCACAAAGCTTCAAGAGT
TAGCTCAAACACTTTTATTGAATGACCAATACTTGCTATCTCCTCATGAT
TTGACAAATGTTACCAAGTCTTCCGTTGGCTACATTCTAATACAGCTACC
AAAACAAATGACAAAATTCTTTAATGAGGTATACCACGATGCTGCTGTGT
TAGACCTTCACTCCATCCGCCAGGCAAGTGACCAAGTGGTGAATTTTCAA
ATGGAGATTCTCAAGTTTCTCATTCAATATCATGAATGGAATAATATTCT
ATTATTTTACAGCAATGATAAGCTATCCAAATATTACAGtggctttaaaa
aaattcttggcGAGTTAAGAGAATCAAGGATTCCAGTACACTTTACAAAG
CTTTTTAAATATAACAGACATTATTATTGGTTTCCCAACCGAGAAAAGAA
ATTGACTAAGGAATGGGTTATACGTAACAAACCTACAGTTATAGTTCTTG
TCGAAAGGGATAGGGGTATTCACTCAGAATTTGATGTCTTGAACCCAATG
AACATTACAACGATACGCTTTGAAGGTAAATCAAAATGCTCTAAAGTTCT
GGACTCCACTATGATCTTAATAGATGTTGGTTCACTGCACTCTCTGTATT
GGTCAGTAATAAAGAATATTCCAAAACTGCAATATAAAAATATTACGAGA
TCACAATTAAGTTTAGAATCTTATGCCCGTAGTTTAGGG
Run BLAST on NCBI

protein sequence of TCONS_00000943-protein

>TCONS_00000943-protein ID=TCONS_00000943-protein|Name=TCONS_00000943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MTKFFNEVYHDAAVLDLHSIRQASDQVVNFQMEILKFLIQYHEWNNILLF
YSNDKLSKYYSGFKKILGELRESRIPVHFTKLFKYNRHYYWFPNREKKLT
KEWVIRNKPTVIVLVERDRGIHSEFDVLNPMNITTIRFEGKSKCSKVLDS
TMILIDVGSLHSLYWSVIKNIPKLQYKNITRSQLSLESYARSLG
Run BLAST on NCBI

transcript from alignment at sc0000005:1406998..1408036

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000943 ID=TCONS_00000943|Name=TCONS_00000943|organism=Clytia hemisphaerica|type=transcript|length=1039bp|location=Sequence derived from alignment at sc0000005:1406998..1408036 (Clytia hemisphaerica)
CCCTAAACTACGGGCATAAGATTCTAAACTTAATTGTGATCTCGTAATAT
TTTTATATTGCAGTTTTGGAATATTCTTTATTACTGACCAATACAGAGAG
TGCAGTGAACCAACATCTATTAAGATCATAGTGGAGTCCAGAACTTTAGA
GCATTTTGATTTACCTTCAAAGCGTATCGTTGTAATGTTCATTGGGTTCA
AGACATCAAATTCTGAGTGAATACCCCTATCCCTTTCGACAAGAACTATA
ACTGTAGGTTTGTTACGTATAACCCATTCCTTAGTCAATTTCTTTTCTCG
GTTGGGAAACCAATAATAATGTCTGTTATATTTAAAAAGCTTTGTAAAGT
GTACTGGAATCCTTGATTCTCTTAACTCgccaagaatttttttaaagcca
CTGTAATATTTGGATAGCTTATCATTGCTGTAAAATAATAGAATATTATT
CCATTCATGATATTGAATGAGAAACTTGAGAATCTCCATTTGAAAATTCA
CCACTTGGTCACTTGCCTGGCGGATGGAGTGAAGGTCTAACACAGCAGCA
TCGTGGTATACCTCATTAAAGAATTTTGTCATTTGTTTTGGTAGCTGTAT
TAGAATGTAGCCAACGGAAGACTTGGTAACATTTGTCAAATCATGAGGAG
ATAGCAAGTATTGGTCATTCAATAAAAGTGTTTGAGCTAACTCTTGAAGC
TTTGTGAAATCATCACAAACGTCATAACCAACATATTGAACTTGTGGGTA
TCGGTTTTCTTCTAGTGATAATTCCTTTGTTGATTGAATTTTGTATCTCA
GGAATTCGTCAGTATACTGACAAAAAGCATTTTCACTGGTTCTGTTCAAC
CTATGGTAACATGTTGAATATATTccaacaaaatatataacaccatcttc
tttttctaaatTCTGATGTTATTGATTTTAAAGTAATCACAAGAAGAGAA
AATGACAGTAGCATCATATTGGCAAATACTTCCCCTACTCAATAAACTTT
ATAACAGGcaaatttttaaactttactAACCTGGGTAAA

Coding sequence (CDS) from alignment at sc0000005:1406998..1408036

>TCONS_00000943 ID=TCONS_00000943|Name=TCONS_00000943|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0000005:1406998..1408036 (Clytia hemisphaerica)
CCCTAAACTACGGGCATAAGATTCTAAACTTAATTGTGATCTCGTAATAT
TTTTATATTGCAGTTTTGGAATATTCTTTATTACTGACCAATACAGAGAG
TGCAGTGAACCAACATCTATTAAGATCATAGTGGAGTCCAGAACTTTAGA
GCATTTTGATTTACCTTCAAAGCGTATCGTTGTAATGTTCATTGGGTTCA
AGACATCAAATTCTGAGTGAATACCCCTATCCCTTTCGACAAGAACTATA
ACTGTAGGTTTGTTACGTATAACCCATTCCTTAGTCAATTTCTTTTCTCG
GTTGGGAAACCAATAATAATGTCTGTTATATTTAAAAAGCTTTGTAAAGT
GTACTGGAATCCTTGATTCTCTTAACTCgccaagaatttttttaaagcca
CTGTAATATTTGGATAGCTTATCATTGCTGTAAAATAATAGAATATTATT
CCATTCATGATATTGAATGAGAAACTTGAGAATCTCCATTTGAAAATTCA
CCACTTGGTCACTTGCCTGGCGGATGGAGTGAAGGTCTAACACAGCAGCA
TCGTGGTATACCTCATTAAAGAATTTTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000568XLOC_000568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000943-exon-sc0000005-1491911889:1406998..1408036TCONS_00000943-exon-sc0000005-1491911889:1406998..1408036Clytia hemisphaericaexon
TCONS_00000943-exon-sc0000005-1510915933:1406998..1408036TCONS_00000943-exon-sc0000005-1510915933:1406998..1408036Clytia hemisphaericaexon
TCONS_00000943-exon-sc0000005-1575043694:1406998..1408036TCONS_00000943-exon-sc0000005-1575043694:1406998..1408036Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000943-proteinTCONS_00000943-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1406998..1408036 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0854885	0.0416824	0.145192	0.0473492	0.057643	0.0455503	0	0	0	0	0	0	0	0	0	0	0.032088	0.131557	0	0	0.289293	0.181423	0.0490097	0.133671	0.0917853	0.819161	0.117222	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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