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TCONS_00000940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000940
Unique NameTCONS_00000940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000940 ID=TCONS_00000940|Name=TCONS_00000940|organism=Clytia hemisphaerica|type=transcript|length=428bp
CCATTATCCAAACTTTCAAACAATATTATCGGTAAGAAGATTCTtcataa
aaattgtattttcggCTCCTTTGCAAAGACGCCTGCATTATTATCCGCGA
GTCAGGTTCGTAATCAGTGCCATACTCTTTCTTCGGGTATCTCCacataa
aacataaaacataaaacataaaatggTCACAAATGAAGTGTTCAAATTAT
ATGGTTCGTATTCGGATATGTTCTCCCGTTCTCCTCAAGTCCACGAGACT
TTGCCCATTTCCGAAGTGCATTTATCCAAATGttcgtgtttttgttttta
gaattttgccaTAATAGAAGAATAATAACATCATCATCCAACAGCTCGAA
TTTGTTGTCATctttatacattttttttatacttttcctCCTTTGATTTT
GGTCGAACGGCTATCTTCAAAAtatttg
Run BLAST on NCBI

transcript from alignment at sc0000005:1290612..1291039

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000940 ID=TCONS_00000940|Name=TCONS_00000940|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0000005:1290612..1291039 (Clytia hemisphaerica)
caaataTTTTGAAGATAGCCGTTCGACCAAAATCAAAGGaggaaaagtat aaaaaaaatgtataaagATGACAACAAATTCGAGCTGTTGGATGATGATG TTATTATTCTTCTATTAtggcaaaattctaaaaacaaaaacacgaaCATT TGGATAAATGCACTTCGGAAATGGGCAAAGTCTCGTGGACTTGAGGAGAA CGGGAGAACATATCCGAATACGAACCATATAATTTGAACACTTCATTTGT GAccattttatgttttatgttttatgttttatgtGGAGATACCCGAAGAA AGAGTATGGCACTGATTACGAACCTGACTCGCGGATAATAATGCAGGCGT CTTTGCAAAGGAGccgaaaatacaatttttatgaAGAATCTTCTTACCGA TAATATTGTTTGAAAGTTTGGATAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000565XLOC_000565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000940-exon-sc0000005-1491911889:1290612..1291039TCONS_00000940-exon-sc0000005-1491911889:1290612..1291039Clytia hemisphaericaexon
TCONS_00000940-exon-sc0000005-1510915933:1290612..1291039TCONS_00000940-exon-sc0000005-1510915933:1290612..1291039Clytia hemisphaericaexon
TCONS_00000940-exon-sc0000005-1575043694:1290612..1291039TCONS_00000940-exon-sc0000005-1575043694:1290612..1291039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1290612..1291039 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45799 0.709617 2.31832 1.71641 0.988233 0.191958 3.12413 1.44815 0.682566 0.169094 1.80539 1.23515 0.646442 0.623425 0.55193 0.424601 1.21612 1.28456 0.172208 0.540611 0.433416 0 0.371489 0.337738 1.59613 1.53004 0.82282 0.474132 0.501231 0.469886
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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