TCONS_00000938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000938
Unique NameTCONS_00000938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000938 ID=TCONS_00000938|Name=TCONS_00000938|organism=Clytia hemisphaerica|type=transcript|length=595bp
tgaatttttaatggAATAGTTTTATACCCAAGATCCCCCGCCGGATAACG
CATCGAATAACACCCCGCAAGGCGGAGCCCGGACTGATAAAAAAAGACGC
ACAAGATGGATTGTCTCAGTAGATCCATAATCTTTGCTTTCTACGAAAAT
TCTACCTACACGAACAGTGAAGAGACTCGGAAACTGCAACAAACGTTGAA
CATGACAGAGCCTTTCGCGTACATTGTAGCGGCATTCAATATTGCTTTAA
ATGCATTGATGATTATTGGTATAGTCAGAACTAATAAACGACTATCTTTG
GTTAATAGATTGTTCTTATATTCAAGTGTTATTGGTGAGATGGTCGGTAT
GCTATCACCGTTATATCAAGTGACTGCTAAGTTGTTTTCCCAAGATTGTC
TATGGCATTTTGTGGTGGCTTCTTTattaacttttttacttttcattgaT
GTTGAAACTTTATTTACGATCACAATCTTGAGATATATCAACTTTAAAAA
GCCATTCAAGAGAGTCTCTGGTCAACTACTGGTCATGTTCATGGTCATTG
AAGCTCTGGTAGCGCTTTTGGTGTCTATATTATTCTTCAATACAT
Run BLAST on NCBI

protein sequence of TCONS_00000938-protein

>TCONS_00000938-protein ID=TCONS_00000938-protein|Name=TCONS_00000938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MDCLSRSIIFAFYENSTYTNSEETRKLQQTLNMTEPFAYIVAAFNIALNA
LMIIGIVRTNKRLSLVNRLFLYSSVIGEMVGMLSPLYQVTAKLFSQDCLW
HFVVASLLTFLLFIDVETLFTITILRYINFKKPFKRVSGQLLVMFMVIEA
LVALLVSILFFNT
Run BLAST on NCBI

transcript from alignment at sc0000005:1223374..1223968

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000938 ID=TCONS_00000938|Name=TCONS_00000938|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0000005:1223374..1223968 (Clytia hemisphaerica)
ATGTATTGAAGAATAATATAGACACCAAAAGCGCTACCAGAGCTTCAATG ACCATGAACATGACCAGTAGTTGACCAGAGACTCTCTTGAATGGCTTTTT AAAGTTGATATATCTCAAGATTGTGATCGTAAATAAAGTTTCAACAtcaa tgaaaagtaaaaaagttaatAAAGAAGCCACCACAAAATGCCATAGACAA TCTTGGGAAAACAACTTAGCAGTCACTTGATATAACGGTGATAGCATACC GACCATCTCACCAATAACACTTGAATATAAGAACAATCTATTAACCAAAG ATAGTCGTTTATTAGTTCTGACTATACCAATAATCATCAATGCATTTAAA GCAATATTGAATGCCGCTACAATGTACGCGAAAGGCTCTGTCATGTTCAA CGTTTGTTGCAGTTTCCGAGTCTCTTCACTGTTCGTGTAGGTAGAATTTT CGTAGAAAGCAAAGATTATGGATCTACTGAGACAATCCATCTTGTGCGTC TTTTTTTATCAGTCCGGGCTCCGCCTTGCGGGGTGTTATTCGATGCGTTA TCCGGCGGGGGATCTTGGGTATAAAACTATTccattaaaaattca

Coding sequence (CDS) from alignment at sc0000005:1223374..1223968

>TCONS_00000938 ID=TCONS_00000938|Name=TCONS_00000938|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0000005:1223374..1223968 (Clytia hemisphaerica)
TGTATTGAAGAATAATATAGACACCAAAAGCGCTACCAGAGCTTCAATGA
CCATGAACATGACCAGTAGTTGACCAGAGACTCTCTTGAATGGCTTTTTA
AAGTTGATATATCTCAAGATTGTGATCGTAAATAAAGTTTCAACAtcaat
gaaaagtaaaaaagttaatAAAGAAGCCACCACAAAATGCCATAGACAAT
CTTGGGAAAACAACTTAGCAGTCACTTGATATAACGGTGATAGCATACCG
ACCATCTCACCAATAACACTTGAATATAAGAACAATCTATTAACCAAAGA
TAGTCGTTTATTAGTTCTGACTATACCAATAATCATCAATGCATTTAAAG
CAATATTGAATGCCGCTACAATGTACGCGAAAGGCTCTGTCATGTTCAAC
GTTTGTTGCAGTTTCCGAGTCTCTTCACTGTTCGTGTAGGTAGAATTTTC
GTAGAAAGCAAAGATTATGGATCTACTGAGACAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000563XLOC_000563Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000938-proteinTCONS_00000938-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000938-exon-sc0000005-1491911889:1223374..1223968TCONS_00000938-exon-sc0000005-1491911889:1223374..1223968Clytia hemisphaericaexon
TCONS_00000938-exon-sc0000005-1510915933:1223374..1223968TCONS_00000938-exon-sc0000005-1510915933:1223374..1223968Clytia hemisphaericaexon
TCONS_00000938-exon-sc0000005-1575043694:1223374..1223968TCONS_00000938-exon-sc0000005-1575043694:1223374..1223968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1223374..1223968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0919113 0.268884 0 0.610878 0 0.293835 0.236333 0.663756 0.154904 0.479683 0 0.306062 1.28367 1.46007 0.10438 0.224033 0.27599 0.495041 1.66096 3.88512 0.088865 0.390107 0.105384 0.287427 0.197362 0.176141 0.630143 0.403503 0.102014 0.207873
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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