TCONS_00000930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000930
Unique NameTCONS_00000930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000930 ID=TCONS_00000930|Name=TCONS_00000930|organism=Clytia hemisphaerica|type=transcript|length=802bp
TATTAAATAAAATTGGAACAATTCAAACATAAATCAAGAGTGAAATAAAT
ATACACTAAATACCTAATTCCATTTTTGTACCAAAAAAGGCTTCTTGTAT
ACATAAAATTATCATAAAGGAacaattgtaaaaaaaaacatgaaccCCAT
AAATAATACGAATAATATGATTGGTGTCAAGAAACTCCAAACAGGCCATA
ATGCAATTGACAATAAAGTCATACCGACCAGAAAAGAGACAACCGATATT
GGTATTGCAAATGGTTGGTGTTTCTCATAGTCTTTTATCCCcatgtaata
atggtaatagccaATAAGTGTGACAGCTATGAGTGTACTTAATGATAAAA
ATCCCAATCCAATGTTCAAATAGGTCCTTTCTATTCTTGGATCATATCTC
AGTGCTAAATAGAAATCAGTATAATAAAATGTGAAAATTGATACCACCAT
CCAAAAAACGCTGTGTGAATTGATTGGTCCGGACTTTTTTGGTACATGTT
TGTCAAGTATCTTTTGACCTTCCTTTTTCAGCTGATCATCAGTGTCTTGA
TTGAATGTCCTTTCCCTGAATCTCAGAAAAGATTCTGAAAAAGCTGCACT
TGAATCTGTCATATTTTTTTACTCTATAATTAACAGTATTAGAGTTGATA
AAGATTAGAGTAGAACACCTGATGAATATACTTTAGATATGCAAACTTTC
ACAAgcagaaaaattgcaaaatctacaatatatgcattgaataaaaaatc
aaatcatggaatgaaagtaaaaataaaagcttttaaataaaaaatttcaa
at
Run BLAST on NCBI

protein sequence of TCONS_00000930-protein

>TCONS_00000930-protein ID=TCONS_00000930-protein|Name=TCONS_00000930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MTDSSAAFSESFLRFRERTFNQDTDDQLKKEGQKILDKHVPKKSGPINSH
SVFWMVVSIFTFYYTDFYLALRYDPRIERTYLNIGLGFLSLSTLIAVTLI
GYYHYYMGIKDYEKHQPFAIPISVVSFLVGMTLLSIALWPVWSFLTPIIL
FVLFMGFMFFFTIVPL
Run BLAST on NCBI

transcript from alignment at sc0000005:912612..913413

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000930 ID=TCONS_00000930|Name=TCONS_00000930|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at sc0000005:912612..913413 (Clytia hemisphaerica)
atttgaaattttttatttaaaagcttttatttttactttcattccatgat
ttgattttttattcaatgcatatattgtagattttgcaatttttctgcTT
GTGAAAGTTTGCATATCTAAAGTATATTCATCAGGTGTTCTACTCTAATC
TTTATCAACTCTAATACTGTTAATTATAGAGTAAAAAAATATGACAGATT
CAAGTGCAGCTTTTTCAGAATCTTTTCTGAGATTCAGGGAAAGGACATTC
AATCAAGACACTGATGATCAGCTGAAAAAGGAAGGTCAAAAGATACTTGA
CAAACATGTACCAAAAAAGTCCGGACCAATCAATTCACACAGCGTTTTTT
GGATGGTGGTATCAATTTTCACATTTTATTATACTGATTTCTATTTAGCA
CTGAGATATGATCCAAGAATAGAAAGGACCTATTTGAACATTGGATTGGG
ATTTTTATCATTAAGTACACTCATAGCTGTCACACTTATtggctattacc
attattacatgGGGATAAAAGACTATGAGAAACACCAACCATTTGCAATA
CCAATATCGGTTGTCTCTTTTCTGGTCGGTATGACTTTATTGTCAATTGC
ATTATGGCCTGTTTGGAGTTTCTTGACACCAATCATATTATTCGTATTAT
TTATGGggttcatgtttttttttacaattgtTCCTTTATGATAATTTTAT
GTATACAAGAAGCCTTTTTTGGTACAAAAATGGAATTAGGTATTTAGTGT
ATATTTATTTCACTCTTGATTTATGTTTGAATTGTTCCAATTTTATTTAA
TA

Coding sequence (CDS) from alignment at sc0000005:912612..913413

>TCONS_00000930 ID=TCONS_00000930|Name=TCONS_00000930|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0000005:912612..913413 (Clytia hemisphaerica)
ATGACAGATTCAAGTGCAGCTTTTTCAGAATCTTTTCTGAGATTCAGGGA
AAGGACATTCAATCAAGACACTGATGATCAGCTGAAAAAGGAAGGTCAAA
AGATACTTGACAAACATGTACCAAAAAAGTCCGGACCAATCAATTCACAC
AGCGTTTTTTGGATGGTGGTATCAATTTTCACATTTTATTATACTGATTT
CTATTTAGCACTGAGATATGATCCAAGAATAGAAAGGACCTATTTGAACA
TTGGATTGGGATTTTTATCATTAAGTACACTCATAGCTGTCACACTTATt
ggctattaccattattacatgGGGATAAAAGACTATGAGAAACACCAACC
ATTTGCAATACCAATATCGGTTGTCTCTTTTCTGGTCGGTATGACTTTAT
TGTCAATTGCATTATGGCCTGTTTGGAGTTTCTTGACACCAATCATATTA
TTCGTATTATTTATGGggttcatgtttttttttacaattgtTCCTTTATG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000555XLOC_000555Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000930-proteinTCONS_00000930-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000930-exon-sc0000005-1491911889:912612..913413TCONS_00000930-exon-sc0000005-1491911889:912612..913413Clytia hemisphaericaexon
TCONS_00000930-exon-sc0000005-1510915933:912612..913413TCONS_00000930-exon-sc0000005-1510915933:912612..913413Clytia hemisphaericaexon
TCONS_00000930-exon-sc0000005-1575043694:912612..913413TCONS_00000930-exon-sc0000005-1575043694:912612..913413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:912612..913413 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.5974	33.2545	30.9571	29.624	12.7476	9.56326	8.84554	10.5854	7.10859	7.24394	8.72832	4.622	5.33178	4.91728	5.02787	5.50504	7.00632	6.72092	5.46943	4.25925	10.2385	9.39546	44.7253	38.6661	8.60738	8.08318	7.13708	4.55262	19.9876	22.2585
Blast
[Close]
BLAST of TCONS_00000930 vs. Swiss-Prot (Human)
Match: TM128 (Transmembrane protein 128 OS=Homo sapiens GN=TMEM128 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.108e-18
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = -2 
Query:  166 DTDDQLKKEGQKILDKH--VPKKSGPI---NSHSVFWMVVSIFTFYYTDFYLALRYDPRIERTYLNIGLGFLSLSTLIAVTLIGYYHYYMGIKDYEKHQPFAIPISVVSFLVGMTLLSIALWPVWSFLTPII 546
            D + QL +EG    +    V KK  P+   N HS FW++ SI   YY DF+  L+ +      +L  G   L +S  IA   I Y  +Y GI +Y+   P  IPI+  SF+      +IALW VWSF TP++
Sbjct:   19 DAEAQLDREGDAGPETSTAVEKKEKPLPRLNIHSGFWILASIVVTYYVDFFKTLKENFHTSSWFL-CGSALLLVSLSIAFYCIVYLEWYCGIGEYDVKYPALIPITTASFIAAGICFNIALWHVWSFFTPLL 149
The following BLAST results are available for this feature:
BLAST of TCONS_00000930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1282.108e-1837.12Transmembrane protein 128 OS=Homo sapiens GN=TMEM1... [more]
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