TCONS_00000928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000928
Unique NameTCONS_00000928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000928 ID=TCONS_00000928|Name=TCONS_00000928|organism=Clytia hemisphaerica|type=transcript|length=497bp
TTAATTTGTGTAGTTTGTGTCTgtgttatgttttagatttcaTTCAAAGA
AGAAGTGGTTTATCATGCTACgcaaattgctcaaaataaaaaGATGCCTT
TTCAGTATTTCTGGAGTTGTTTTTGTATTTGCCTTATTCTTGGTAACATC
TATTATTCATTTGGATAAAAGTTTTTTCGAAGAAAACCAAAGTAATTTAA
ATCCGGTATATGAATTTAATCTGAACCCAAGACGTGTCAAACAGCGTAAT
ACCGGGCAATCACAGTTATTGGATCATGCCTTCTACACAAAAAATGAAAG
ACCTCAATCTGGAGCACCACATcctccaaaaacttttactgttGATCTAA
GTGAAGGCCAAGTTGTAACTTCTATACTCTCAAGTAAACTAAAGATAAGG
ACTACACCATTACAAACCAAACTGAAATCTAAGAAGGATGGGATCAGCCA
GTCAAATATTGAAAAAGCATCAAAGTCTAAAtcttttaagacttttt
Run BLAST on NCBI

protein sequence of TCONS_00000928-protein

>TCONS_00000928-protein ID=TCONS_00000928-protein|Name=TCONS_00000928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MLRKLLKIKRCLFSISGVVFVFALFLVTSIIHLDKSFFEENQSNLNPVYE
FNLNPRRVKQRNTGQSQLLDHAFYTKNERPQSGAPHPPKTFTVDLSEGQV
VTSILSSKLKIRTTPLQTKLKSKKDGISQSNIEKASKSKSFKTF
Run BLAST on NCBI

transcript from alignment at sc0000005:886061..886557

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000928 ID=TCONS_00000928|Name=TCONS_00000928|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0000005:886061..886557 (Clytia hemisphaerica)
aaaaagtcttaaaagaTTTAGACTTTGATGCTTTTTCAATATTTGACTGG
CTGATCCCATCCTTCTTAGATTTCAGTTTGGTTTGTAATGGTGTAGTCCT
TATCTTTAGTTTACTTGAGAGTATAGAAGTTACAACTTGGCCTTCACTTA
GATCaacagtaaaagtttttggaggATGTGGTGCTCCAGATTGAGGTCTT
TCATTTTTTGTGTAGAAGGCATGATCCAATAACTGTGATTGCCCGGTATT
ACGCTGTTTGACACGTCTTGGGTTCAGATTAAATTCATATACCGGATTTA
AATTACTTTGGTTTTCTTCGAAAAAACTTTTATCCAAATGAATAATAGAT
GTTACCAAGAATAAGGCAAATACAAAAACAACTCCAGAAATACTGAAAAG
GCATCtttttattttgagcaatttgcGTAGCATGATAAACCACTTCTTCT
TTGAAtgaaatctaaaacataacacAGACACAAACTACACAAATTAA

Coding sequence (CDS) from alignment at sc0000005:886061..886557

>TCONS_00000928 ID=TCONS_00000928|Name=TCONS_00000928|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0000005:886061..886557 (Clytia hemisphaerica)
aaaagtcttaaaagaTTTAGACTTTGATGCTTTTTCAATATTTGACTGGC
TGATCCCATCCTTCTTAGATTTCAGTTTGGTTTGTAATGGTGTAGTCCTT
ATCTTTAGTTTACTTGAGAGTATAGAAGTTACAACTTGGCCTTCACTTAG
ATCaacagtaaaagtttttggaggATGTGGTGCTCCAGATTGAGGTCTTT
CATTTTTTGTGTAGAAGGCATGATCCAATAACTGTGATTGCCCGGTATTA
CGCTGTTTGACACGTCTTGGGTTCAGATTAAATTCATATACCGGATTTAA
ATTACTTTGGTTTTCTTCGAAAAAACTTTTATCCAAATGAATAATAGATG
TTACCAAGAATAAGGCAAATACAAAAACAACTCCAGAAATACTGAAAAGG
CATCtttttattttgagcaatttgcGTAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000553XLOC_000553Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000928-proteinTCONS_00000928-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000928-exon-sc0000005-1491911889:886061..886557TCONS_00000928-exon-sc0000005-1491911889:886061..886557Clytia hemisphaericaexon
TCONS_00000928-exon-sc0000005-1510915933:886061..886557TCONS_00000928-exon-sc0000005-1510915933:886061..886557Clytia hemisphaericaexon
TCONS_00000928-exon-sc0000005-1575043694:886061..886557TCONS_00000928-exon-sc0000005-1575043694:886061..886557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:886061..886557 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.166124	0	0.158376	0.296539	0.103807	0.642909	0	0.0820416	0.245783	0.510495	1.18914	0.900797	0	0	0.916651	1.78139	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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