TCONS_00000927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000927
Unique NameTCONS_00000927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000927 ID=TCONS_00000927|Name=TCONS_00000927|organism=Clytia hemisphaerica|type=transcript|length=523bp
CGTTCAATTGTCCAGTTCAATACTTATCGCCTAAAGACTCTGTACTAGGA
GACATTATCTCTTGCAAGCAACACGAGATGAGCCAAAGTTCTTGTAAATA
TGTGACTGAAAATTACAAATACAATTTTACAAACAATACCTGTGGAGGTA
TTGAGAAGACAATCATATGCCAATATGCAAAGAATGAGAATCGATTTCGA
TGTCGAATTGATGCATGTGGTTtcgatttaaaaaatgaaatcttAATTCA
TTTACTTGATTTAAAGTCAGGTGTCGTTAGACCTATTCTGGAAGGTTTCA
AATCAGCCAGACAGCTAAGTTTTAATGTTATGAGGTATGCCCTAAAGACT
TTGAAACAAGGGaacgattttttatatttgagctGTGGATACGATGAGAA
TAAGACACAACTTTTGATATTGGATAGATCAAAGCTTTTGAATtcatttc
aaaggaaaaatgacaaaattggTGTTAAGACTCAATTAAACATAAATATT
GTTTTACTAGATTCAGTATCAAG
Run BLAST on NCBI

protein sequence of TCONS_00000927-protein

>TCONS_00000927-protein ID=TCONS_00000927-protein|Name=TCONS_00000927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
FNCPVQYLSPKDSVLGDIISCKQHEMSQSSCKYVTENYKYNFTNNTCGGI
EKTIICQYAKNENRFRCRIDACGFDLKNEILIHLLDLKSGVVRPILEGFK
SARQLSFNVMRYALKTLKQGNDFLYLSCGYDENKTQLLILDRSKLLNSFQ
RKNDKIGVKTQLNINIVLLDSVS
Run BLAST on NCBI

transcript from alignment at sc0000005:885452..885974

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000927 ID=TCONS_00000927|Name=TCONS_00000927|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0000005:885452..885974 (Clytia hemisphaerica)
CTTGATACTGAATCTAGTAAAACAATATTTATGTTTAATTGAGTCTTAAC
AccaattttgtcatttttcctttgaaatgaATTCAAAAGCTTTGATCTAT
CCAATATCAAAAGTTGTGTCTTATTCTCATCGTATCCACagctcaaatat
aaaaaatcgttCCCTTGTTTCAAAGTCTTTAGGGCATACCTCATAACATT
AAAACTTAGCTGTCTGGCTGATTTGAAACCTTCCAGAATAGGTCTAACGA
CACCTGACTTTAAATCAAGTAAATGAATTaagatttcattttttaaatcg
aAACCACATGCATCAATTCGACATCGAAATCGATTCTCATTCTTTGCATA
TTGGCATATGATTGTCTTCTCAATACCTCCACAGGTATTGTTTGTAAAAT
TGTATTTGTAATTTTCAGTCACATATTTACAAGAACTTTGGCTCATCTCG
TGTTGCTTGCAAGAGATAATGTCTCCTAGTACAGAGTCTTTAGGCGATAA
GTATTGAACTGGACAATTGAACG

Coding sequence (CDS) from alignment at sc0000005:885452..885974

>TCONS_00000927 ID=TCONS_00000927|Name=TCONS_00000927|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000005:885452..885974 (Clytia hemisphaerica)
TGATACTGAATCTAGTAAAACAATATTTATGTTTAATTGAGTCTTAACAc
caattttgtcatttttcctttgaaatgaATTCAAAAGCTTTGATCTATCC
AATATCAAAAGTTGTGTCTTATTCTCATCGTATCCACagctcaaatataa
aaaatcgttCCCTTGTTTCAAAGTCTTTAGGGCATACCTCATAACATTAA
AACTTAGCTGTCTGGCTGATTTGAAACCTTCCAGAATAGGTCTAACGACA
CCTGACTTTAAATCAAGTAAATGAATTaagatttcattttttaaatcgaA
ACCACATGCATCAATTCGACATCGAAATCGATTCTCATTCTTTGCATATT
GGCATATGATTGTCTTCTCAATACCTCCACAGGTATTGTTTGTAAAATTG
TATTTGTAATTTTCAGTCACATATTTACAAGAACTTTGGCTCATCTCGTG
TTGCTTGCAAGAGATAATGTCTCCTAGTACAGAGTCTTTAGGCGATAAGT
ATTGAACTGGACAATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000552XLOC_000552Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000927-proteinTCONS_00000927-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000927-exon-sc0000005-1491911889:885452..885974TCONS_00000927-exon-sc0000005-1491911889:885452..885974Clytia hemisphaericaexon
TCONS_00000927-exon-sc0000005-1510915933:885452..885974TCONS_00000927-exon-sc0000005-1510915933:885452..885974Clytia hemisphaericaexon
TCONS_00000927-exon-sc0000005-1575043694:885452..885974TCONS_00000927-exon-sc0000005-1575043694:885452..885974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:885452..885974 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.120404	0.290524	0.135992	0.0952115	0.825544	0	0.225745	0.225431	0	1.02652	1.37702	0.169637	0.0869362	0.240214	0.628417	0	0	0	0	0.242617	0.108265	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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