TCONS_00000921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000921
Unique NameTCONS_00000921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000921 ID=TCONS_00000921|Name=TCONS_00000921|organism=Clytia hemisphaerica|type=transcript|length=1050bp
CGCAGTTTtggttagaaaaataaattgttGTTACTGTTTTACTCTTCAAA
TAATGTGAattcacaaattttcaaaaattccactCAGACTCTGTCGTTTC
AATTCTATAATTACAGTAAAATTAactgaataaaataaaaatcaattaaa
taaatttaaaacagaACCTAAAGGCGTACTTAAAACTACTTACAACAATA
TATAGATAGGTGTGCTATTTGTATGAAGCCCTCGACACACCCTTTTCAGT
GTTCACTATGCGGATCACATCATAAAATAGTTATTAGgtaaggcgaggcc
aatttaatttgttattttacgggccaagcgggtcggtcggtcggcgaaaa
aataaaaatgaaagaagaatTTCAGCTATAAAATCTCCTGAAAAGGCAGC
ATAAACcggcaaaaactactacatcttaacaaaaatgcgaaatataTATA
AATTCCAAATGTCGCTTGAATGAAtcactttgaaattgaattcGATTAAA
CTTTTCAGTCCCCCAGAAGCAAAAGCTAGGCAATTGGATCCTTTTACAGT
GGAAAAAAGATTTTGCCAACTTTGACGAAATCTGTTGTCCATTTTAGAGC
AAAAATGGTAGGATTGTTCACTCGATTTTTCTCACTTTTCGCAACCTACA
GTATAACCCTCTCTCATATCGAACGTACTCTACGGTTTTGGGACTGGCCG
CCTAAACAATTGAAGTTATCTTTGTACCTACCCAGAGTATTGGTCTTTTT
CCGTTGTGAAGTGGCGATAGGAAAGTTTTGACGGGAATAAAAAGGTTCAG
CCATCTTACGGCACACGACAGACAGAAACTTTGTCTGCTATTAACAAAAC
TTATATTTATAACCCCCTATTATCCAAAAAATATGTTAGAAAATTCTTTA
TTTAGAAATCTTTATAAACAATATGAACAGatccaaaaaaatcacaaaat
acgGAGACATCATATATGGGTTAAAATTTTACGTTATGACGGGTGTACTG
GGCCCGAGTATATCCTTTGTTGAACCAGTTAGTAAAATTGATGGCGATGC
Run BLAST on NCBI

transcript from alignment at sc0000005:608864..609913

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000921 ID=TCONS_00000921|Name=TCONS_00000921|organism=Clytia hemisphaerica|type=transcript|length=1050bp|location=Sequence derived from alignment at sc0000005:608864..609913 (Clytia hemisphaerica)
GCATCGCCATCAATTTTACTAACTGGTTCAACAAAGGATATACTCGGGCC CAGTACACCCGTCATAACGTAAAATTTTAACCCATATATGATGTCTCcgt attttgtgatttttttggatCTGTTCATATTGTTTATAAAGATTTCTAAA TAAAGAATTTTCTAACATATTTTTTGGATAATAGGGGGTTATAAATATAA GTTTTGTTAATAGCAGACAAAGTTTCTGTCTGTCGTGTGCCGTAAGATGG CTGAACCTTTTTATTCCCGTCAAAACTTTCCTATCGCCACTTCACAACGG AAAAAGACCAATACTCTGGGTAGGTACAAAGATAACTTCAATTGTTTAGG CGGCCAGTCCCAAAACCGTAGAGTACGTTCGATATGAGAGAGGGTTATAC TGTAGGTTGCGAAAAGTGAGAAAAATCGAGTGAACAATCCTACCATTTTT GCTCTAAAATGGACAACAGATTTCGTCAAAGTTGGCAAAATCTTTTTTCC ACTGTAAAAGGATCCAATTGCCTAGCTTTTGCTTCTGGGGGACTGAAAAG TTTAATCgaattcaatttcaaagtgaTTCATTCAAGCGACATTTGGAATT TATAtatatttcgcatttttgttaagatgtagtagtttttgccgGTTTAT GCTGCCTTTTCAGGAGATTTTATAGCTGAAattcttctttcatttttatt ttttcgccgaccgaccgacccgcttggcccgtaaaataacaaattaaatt ggcctcgccttacCTAATAACTATTTTATGATGTGATCCGCATAGTGAAC ACTGAAAAGGGTGTGTCGAGGGCTTCATACAAATAGCACACCTATCTATA TATTGTTGTAAGTAGTTTTAAGTACGCCTTTAGGTtctgttttaaattta tttaattgatttttattttattcagtTAATTTTACTGTAATTATAGAATT GAAACGACAGAGTCTGagtggaatttttgaaaatttgtgaatTCACATTA TTTGAAGAGTAAAACAGTAACaacaatttatttttctaaccaAAACTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000546XLOC_000546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000921-exon-sc0000005-1491911889:608864..609913TCONS_00000921-exon-sc0000005-1491911889:608864..609913Clytia hemisphaericaexon
TCONS_00000921-exon-sc0000005-1510915933:608864..609913TCONS_00000921-exon-sc0000005-1510915933:608864..609913Clytia hemisphaericaexon
TCONS_00000921-exon-sc0000005-1575043694:608864..609913TCONS_00000921-exon-sc0000005-1575043694:608864..609913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:608864..609913 .
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.885209 0.520562 0.31141 0.142693 0.230114 0.322316 0.643929 0.637641 0.869107 0.363087 0.814786 1.12792 0.58533 0.252671 0.79706 0.243173 0.504802 0.441276 0.681053 0.820607 1.61792 1.30617 0.623389 0.8398 0.598092 0.728883 1.32749 0.699713 1.64684 0.948286
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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