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TCONS_00000918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000918
Unique NameTCONS_00000918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000918 ID=TCONS_00000918|Name=TCONS_00000918|organism=Clytia hemisphaerica|type=transcript|length=634bp
gatttttcatcgcataatttctacgggaaattgaaagtaatttcattcgg
cttgtgatgtttgagagcttggatgttgtgAAGCTGCAGGAagaaaggta
aacaaattatagtcaGTCAGTACCTTTACCCTGGTAAATCAACTCGGGTT
CAATTTCGGGTGTATCAGGTTCACCCGACCTTACCtgaaattgctatttt
tggaaGTCCGGTTCGTTTCCAGTAAATCGGGTTAACCCGAATTCACGGGT
TGTTCAGGTTGTTGTTTTTTCGAGTATTTCGGGTATACCTTAAAAGTCGG
GAAACCCAGGTTAGCGCGCGCCTGCGCACCGAGCACTTACCTGAAGAACT
CGGGTTATTGGACGAATTTGAGTGGTCCTTTGCgtccgcaaaaatatttt
tttcacgaTCGAGAATTTAGAGCgcgctttttttctttctgcaaGAGAGT
TCAAGATGGAAGGTCACGTCACTTCGTACTTCTCATTTACAATTTACTTT
GACAACTGGATGAAGAAAATCGCCTACAATTTTCCAAAGGCAATGACTAT
GACtggatgaagaaaaaaaggtatgcttttatcattctttattttcttaa
taaatttgACAGGGCAGGGGAAGTTGGTTTGATT
Run BLAST on NCBI

transcript from alignment at sc0000005:584548..585181

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000918 ID=TCONS_00000918|Name=TCONS_00000918|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0000005:584548..585181 (Clytia hemisphaerica)
AATCAAACCAACTTCCCCTGCCCTGTcaaatttattaagaaaataaagaa tgataaaagcatacctttttttcttcatccaGTCATAGTCATTGCCTTTG GAAAATTGTAGGCGATTTTCTTCATCCAGTTGTCAAAGTAAATTGTAAAT GAGAAGTACGAAGTGACGTGACCTTCCATCTTGAACTCTCttgcagaaag aaaaaaagcgcGCTCTAAATTCTCGAtcgtgaaaaaaatatttttgcgga cGCAAAGGACCACTCAAATTCGTCCAATAACCCGAGTTCTTCAGGTAAGT GCTCGGTGCGCAGGCGCGCGCTAACCTGGGTTTCCCGACTTTTAAGGTAT ACCCGAAATACTCGAAAAAACAACAACCTGAACAACCCGTGAATTCGGGT TAACCCGATTTACTGGAAACGAACCGGACttccaaaaatagcaatttcaG GTAAGGTCGGGTGAACCTGATACACCCGAAATTGAACCCGAGTTGATTTA CCAGGGTAAAGGTACTGACtgactataatttgtttacctttctTCCTGCA GCTTcacaacatccaagctctcaaacatcacaagccgaatgaaattactt tcaatttcccgtagaaattatgcgatgaaaaatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000543XLOC_000543Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000918-exon-sc0000005-1491911889:584548..585181TCONS_00000918-exon-sc0000005-1491911889:584548..585181Clytia hemisphaericaexon
TCONS_00000918-exon-sc0000005-1510915933:584548..585181TCONS_00000918-exon-sc0000005-1510915933:584548..585181Clytia hemisphaericaexon
TCONS_00000918-exon-sc0000005-1575043694:584548..585181TCONS_00000918-exon-sc0000005-1575043694:584548..585181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:584548..585181 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.61987 0.754064 0.663139 0.305276 3.25519 2.67957 1.3204 2.57122 0.145598 0.357564 1.83162 1.65027 0.777964 1.12852 2.29771 1.15462 1.09423 1.1163 1.35207 0.878986 0.381232 0 0 0.486186 0.672892 0.9286 0.332628 1.41909 0.316313 0.312694
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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