Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000912
Unique NameTCONS_00000912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000912 ID=TCONS_00000912|Name=TCONS_00000912|organism=Clytia hemisphaerica|type=transcript|length=603bp
atgattttcttttttaaataataaaactaAAGAAGACTGAATAAAGAAAG
TACAAACATAATAAGACCAACTCTGTCCACACAtcattttcatataaaaa
tccTATTGAAGCGTAGTCATGCGATTATGACCAAATTAATTCAAGTTCAA
TGTAGCAAAGCAAAACAGTGATTATTGAATCTTTTGGACTTTTAGGCAAA
AAACTCGTTTTTATATTCTGTAGAGATATATCAAGCTGATGATGGCTTTT
AAACATGTTTGATAATAAAACTTTTGTTAGACTATGTACAAAGGGAATAA
ACATAAAGACAAAAAGACTAAAAATGTAGTATGTCCTCGTATGATCTTAC
CACGCATCGCATAAATCGATCGGCGAATCCCTCTTCCGACTGATTGATAA
AGTATCTCATGTTATATTCATTTACAAAACCACCAACCTTACTACAGGGA
ATACCCCTCCTCTCTTTGAGCCAATTGGTTGCATGACCGTTCGGCTCGTC
ATTGCCCTGGAATAGCTCCATGGCATCACTTTGCGCAATGTTTGCTTTCA
AATTGAATAGTTGTCGTGCAAACACTATACTTCCTTCCCTCACCGGGGCT
GTG
Run BLAST on NCBI

transcript from alignment at sc0000005:473967..474569

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000912 ID=TCONS_00000912|Name=TCONS_00000912|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0000005:473967..474569 (Clytia hemisphaerica)
CACAGCCCCGGTGAGGGAAGGAAGTATAGTGTTTGCACGACAACTATTCA ATTTGAAAGCAAACATTGCGCAAAGTGATGCCATGGAGCTATTCCAGGGC AATGACGAGCCGAACGGTCATGCAACCAATTGGCTCAAAGAGAGGAGGGG TATTCCCTGTAGTAAGGTTGGTGGTTTTGTAAATGAATATAACATGAGAT ACTTTATCAATCAGTCGGAAGAGGGATTCGCCGATCGATTTATGCGATGC GTGGTAAGATCATACGAGGACATACTACATTTTTAGTCTTTTTGTCTTTA TGTTTATTCCCTTTGTACATAGTCTAACAAAAGTTTTATTATCAAACATG TTTAAAAGCCATCATCAGCTTGATATATCTCTACAGAATATAAAAACGAG TTTTTTGCCTAAAAGTCCAAAAGATTCAATAATCACTGTTTTGCTTTGCT ACATTGAACTTGAATTAATTTGGTCATAATCGCATGACTACGCTTCAATA ggatttttatatgaaaatgaTGTGTGGACAGAGTTGGTCTTATTATGTTT GTACTTTCTTTATTCAGTCTTCTTtagttttattatttaaaaaagaaaat cat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000537XLOC_000537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000912-exon-sc0000005-1491911889:473967..474569TCONS_00000912-exon-sc0000005-1491911889:473967..474569Clytia hemisphaericaexon
TCONS_00000912-exon-sc0000005-1510915933:473967..474569TCONS_00000912-exon-sc0000005-1510915933:473967..474569Clytia hemisphaericaexon
TCONS_00000912-exon-sc0000005-1575043694:473967..474569TCONS_00000912-exon-sc0000005-1575043694:473967..474569Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:473967..474569 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.547237 0.257463 0.478529 0.288713 1.49462 0.806195 0.311697 0.44797 0.340732 0.486282 0.699967 0.580613 0.202377 0.14177 0.316329 0.947552 0.149029 0.329936 0.922671 0.59169 0.511947 0.737465 0 0.811656 0.354006 0.649706 0.350111 0.275925 0.481082 0.387171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top