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TCONS_00000910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000910
Unique NameTCONS_00000910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000910 ID=TCONS_00000910|Name=TCONS_00000910|organism=Clytia hemisphaerica|type=transcript|length=2725bp
AAAAGGGGCTcccaattttattttgatcctAGGTCTAGATATAATTAAGG
AAGccaaaaaagattattttgaCGTGTAAAgactaaaaaagtaaaaaata
cccATTTATAGCCCATTGCTTGTAAGAAAAGTAGGGATAATTAGGTGAAA
gaaatttttggctcaaaacctCTAGCAATGGTCTCAAGTAAAACAGGGTG
GCCAGCGATACtggaaatacttgaaaatacttgaatatactggaaaaaaa
attgatacttgattatacttcaaattttgataaaagtgtTATTTTTAAAG
TATATACTGGAAATGAAAATCTCTAATACTGGAATATACTTGATTTTATC
ATTCATGATGCCGCGGAGGTCAAATCCTGGATTGGTGTCCAGCGCGGGAT
AACTCATCACCCTTTTTCGTTATATTGTTTGTGAAATTTTAGTCGAGTAT
GTACTTGAATATACTTATTTTTCTTGGTCCAAGatacttgaaaattttga
aaatgtacttgaaaaatggaaaaaaattgtaaaaatgtacTTGATTTTAC
TGGAAATTGGATTCCCGAAATCGCTGGCCACCCTGTAAAACTTACTGACA
CTTTTTTAGTACTAAGATTCTGAAGCTAAAGTATGTCAATTTGAAGTCTT
GAATCTTGAGGTATCACAAAGACATAATTATTGAAATTAATATAAACAGA
ACTAAAAAATTTCAAGCATGATTATCTCAATATTAGAATATagaaaaggg
agaaaaaaatttggaggtttttcTCAGAATAACTAAAAAAAAACTGagga
ccaaatttcataacttacctgattatccctttaaagtaAATAAAGCACAA
ATTAATAGCATGGAGACACTATTGGATCCAAATCAACAGCTTTCTTTGAC
TGACTTGGTGGTTTATTATTACAAAGTGCAACCAAAACTGAAGTATCATG
AAATAGTTTCAATAATAAACCAGCATCATGGCAAGCACTTGACCCTTAGA
AACTTGAAAAACATATGTGCAAAACAATCTTTATCTCGAAAATGTAATGT
AACTCACGAGCAACTTTGTGAAGCTATAAGGAATGAAATTGGTACTTCGC
TGTCTCTTGTTGGCTATAGGCAAATgtatgaaaatttaacattgAAGTAT
AACATCAATACATCAAAAGAAAAGGTAAGGTTAGCCTTGCTAACAGTTGA
TCCAGAGGGTGTAGAACAAAGAAGAAGTCGCACTATTCAACGTCGTTCTT
ATTACACTGACGGGCCAGGTCATATATTTCACATTGATGGCAATGACAAG
CTCAAGCAATGGGGATTTGCAATCCACGGTGGAATTGATGGATTCAGCAG
GAAAATACTTTGGCTAAGTGTTTCAACCACTAACAATGAACCAATAGCTG
TggctaatttatttttgaattgtgTGAAGAGGTTTCTAGTAGCCCCTAAG
ATTTTAAGAATGGACAATGGAACTGAAAATGTACATTGCAATCGTTTGCA
AGAGTTTTTCACTGGAGAAGACAACCGATGCATAAATTCTGTTTCAGTCA
GGAATCAACGAATTGAATCATTTTGGTCAAGACTTAAACGTTATCGTACA
AATTGGTGGATACAACTTTTCAGGACCATGGAATCAGAAGGTCTTTTTAA
TGGAGAATTAGAGTCTCACAAAGAGTTGCTTTTGTTCTGTTTTATGCCAG
TCATCCAAAGAGAGCTAAATGATATGCTATCCACCTGGAATAGGAGGTCA
GTTAGACAGTCAAATGTTAGTCCTGGTGGAAAACCTGATATATTGTTCCA
TGTTCCTGCTACTGTTGGTTACAGCTTTCAGGGAACTCCAGTTGAACTAG
AAGACATAAACGTTGCATCAGATTTGATTGGAATTATACAGcaaccattt
ttcaaaagtaaagagCTCTATGACTTGCTAATGAGCTATTCTGTATTGCA
TGGTTTATCACAATTTAATAACGCAGAAGATTCACTTGAAAACTATGTGA
GACTACTTAACTTGTTACAAAATGATGGTGTatatttttaactcaaatac
ATTTCTATAATTTATGCTTGTTATGTTTTTTTAGTCAAGATATTTTGCAA
TTGTCACACTCATAGTGAATTAGCGATCTATTTTAAACCTTTGAGGTTAG
ATCGCATGTGCGGGTTGCAAATAAAACCCATTTTGTCAGCTTGATGAAAC
TCATACAAATTGTACAGGAAGCAGGTTTAAATAGGCTCTCTCGGTTCTGT
TATTAGTACACtttgaattttgtaaacatCAGGGCTGGAAAAATTCAGAC
CAAAGAGGAAAAATATCTGCTTATCACTAGAGGTTATACATTGCTACTCT
CAAgtgcctaataaacggggggttaaAATAGACAGggggatggaaaaaat
tttcaaatctaatAAACAGGACCCCTAACTACTTTATCTggattaaatta
aaattttttggatttaatttCCCGAGTCAAGAGTTTCAGAAATTtcacgt
ggatttaatttcgcgaatccaCACGTTTTcacgagttttaatttcgcgaa
aagggcaaaaaatcgcgaaaccgcaaaatttaatctcataaaaatttaat
ccgattaaaatACCTAATTACAACCTAATTaccagggggttggaaaatgt
tCTCCTGAACACCCTTACATAGGGTAAAATTAAGCTGAAAATAAGGCCAT
TTATAGCAAAATGAGGGACTTTCAC
Run BLAST on NCBI

protein sequence of TCONS_00000910-protein

>TCONS_00000910-protein ID=TCONS_00000910-protein|Name=TCONS_00000910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
METLLDPNQQLSLTDLVVYYYKVQPKLKYHEIVSIINQHHGKHLTLRNLK
NICAKQSLSRKCNVTHEQLCEAIRNEIGTSLSLVGYRQMYENLTLKYNIN
TSKEKVRLALLTVDPEGVEQRRSRTIQRRSYYTDGPGHIFHIDGNDKLKQ
WGFAIHGGIDGFSRKILWLSVSTTNNEPIAVANLFLNCVKRFLVAPKILR
MDNGTENVHCNRLQEFFTGEDNRCINSVSVRNQRIESFWSRLKRYRTNWW
IQLFRTMESEGLFNGELESHKELLLFCFMPVIQRELNDMLSTWNRRSVRQ
SNVSPGGKPDILFHVPATVGYSFQGTPVELEDINVASDLIGIIQQPFFKS
KELYDLLMSYSVLHGLSQFNNAEDSLENYVRLLNLLQNDGVYF
Run BLAST on NCBI

transcript from alignment at sc0000005:273731..276455

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000910 ID=TCONS_00000910|Name=TCONS_00000910|organism=Clytia hemisphaerica|type=transcript|length=2725bp|location=Sequence derived from alignment at sc0000005:273731..276455 (Clytia hemisphaerica)
GTGAAAGTCCCTCATTTTGCTATAAATGGCCTTATTTTCAGCTTAATTTT ACCCTATGTAAGGGTGTTCAGGAGaacattttccaaccccctggtAATTA GGTTGTAATTAGGTattttaatcggattaaatttttatgagattaaattt tgcggtttcgcgattttttgcccttttcgcgaaattaaaactcgtgAAAA CGTGtggattcgcgaaattaaatccacgtgaAATTTCTGAAACTCTTGAC TCGGGaaattaaatccaaaaaattttaatttaatccAGATAAAGTAGTTA GGGGTCCTGTTTattagatttgaaaattttttccatccccCTGTCTATTt taaccccccgtttattaggcacTTGAGAGTAGCAATGTATAACCTCTAGT GATAAGCAGATATTTTTCCTCTTTGGTCTGAATTTTTCCAGCCCTGatgt ttacaaaattcaaaGTGTACTAATAACAGAACCGAGAGAGCCTATTTAAA CCTGCTTCCTGTACAATTTGTATGAGTTTCATCAAGCTGACAAAATGGGT TTTATTTGCAACCCGCACATGCGATCTAACCTCAAAGGTTTAAAATAGAT CGCTAATTCACTATGAGTGTGACAATTGCAAAATATCTTGACTAAAAAAA CATAACAAGCATAAATTATAGAAATgtatttgagttaaaaatatACACCA TCATTTTGTAACAAGTTAAGTAGTCTCACATAGTTTTCAAGTGAATCTTC TGCGTTATTAAATTGTGATAAACCATGCAATACAGAATAGCTCATTAGCA AGTCATAGAGctctttacttttgaaaaatggttgCTGTATAATTCCAATC AAATCTGATGCAACGTTTATGTCTTCTAGTTCAACTGGAGTTCCCTGAAA GCTGTAACCAACAGTAGCAGGAACATGGAACAATATATCAGGTTTTCCAC CAGGACTAACATTTGACTGTCTAACTGACCTCCTATTCCAGGTGGATAGC ATATCATTTAGCTCTCTTTGGATGACTGGCATAAAACAGAACAAAAGCAA CTCTTTGTGAGACTCTAATTCTCCATTAAAAAGACCTTCTGATTCCATGG TCCTGAAAAGTTGTATCCACCAATTTGTACGATAACGTTTAAGTCTTGAC CAAAATGATTCAATTCGTTGATTCCTGACTGAAACAGAATTTATGCATCG GTTGTCTTCTCCAGTGAAAAACTCTTGCAAACGATTGCAATGTACATTTT CAGTTCCATTGTCCATTCTTAAAATCTTAGGGGCTACTAGAAACCTCTTC AcacaattcaaaaataaattagccACAGCTATTGGTTCATTGTTAGTGGT TGAAACACTTAGCCAAAGTATTTTCCTGCTGAATCCATCAATTCCACCGT GGATTGCAAATCCCCATTGCTTGAGCTTGTCATTGCCATCAATGTGAAAT ATATGACCTGGCCCGTCAGTGTAATAAGAACGACGTTGAATAGTGCGACT TCTTCTTTGTTCTACACCCTCTGGATCAACTGTTAGCAAGGCTAACCTTA CCTTTTCTTTTGATGTATTGATGTTATACTTcaatgttaaattttcatac ATTTGCCTATAGCCAACAAGAGACAGCGAAGTACCAATTTCATTCCTTAT AGCTTCACAAAGTTGCTCGTGAGTTACATTACATTTTCGAGATAAAGATT GTTTTGCACATATGTTTTTCAAGTTTCTAAGGGTCAAGTGCTTGCCATGA TGCTGGTTTATTATTGAAACTATTTCATGATACTTCAGTTTTGGTTGCAC TTTGTAATAATAAACCACCAAGTCAGTCAAAGAAAGCTGTTGATTTGGAT CCAATAGTGTCTCCATGCTATTAATTTGTGCTTTATTtactttaaaggga taatcaggtaagttatgaaatttggtcctCAGTTTTTTTTTAGTTATTCT GAgaaaaacctccaaatttttttctcccttttctATATTCTAATATTGAG ATAATCATGCTTGAAATTTTTTAGTTCTGTTTATATTAATTTCAATAATT ATGTCTTTGTGATACCTCAAGATTCAAGACTTCAAATTGACATACTTTAG CTTCAGAATCTTAGTACTAAAAAAGTGTCAGTAAGTTTTACAGGGTGGCC AGCGATTTCGGGAATCCAATTTCCAGTAAAATCAAgtacatttttacaat ttttttccatttttcaagtacattttcaaaattttcaagtatCTTGGACC AAGAAAAATAAGTATATTCAAGTACATACTCGACTAAAATTTCACAAACA ATATAACGAAAAAGGGTGATGAGTTATCCCGCGCTGGACACCAATCCAGG ATTTGACCTCCGCGGCATCATGAATGATAAAATCAAGTATATTCCAGTAT TAGAGATTTTCATTTCCAGTATATACTTTAAAAATAacacttttatcaaa atttgaagtataatcaagtatcaattttttttccagtatattcaagtatt ttcaagtatttccaGTATCGCTGGCCACCCTGTTTTACTTGAGACCATTG CTAGaggttttgagccaaaaatttcTTTCACCTAATTATCCCTACTTTTC TTACAAGCAATGGGCTATAAATgggtattttttacttttttagtcTTTAC ACGtcaaaataatcttttttggCTTCCTTAATTATATCTAGACCTaggat caaaataaaattgggAGCCCCTTTT

Coding sequence (CDS) from alignment at sc0000005:273731..276455

>TCONS_00000910 ID=TCONS_00000910|Name=TCONS_00000910|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000005:273731..276455 (Clytia hemisphaerica)
ttaaaaatatACACCATCATTTTGTAACAAGTTAAGTAGTCTCACATAGT
TTTCAAGTGAATCTTCTGCGTTATTAAATTGTGATAAACCATGCAATACA
GAATAGCTCATTAGCAAGTCATAGAGctctttacttttgaaaaatggttg
CTGTATAATTCCAATCAAATCTGATGCAACGTTTATGTCTTCTAGTTCAA
CTGGAGTTCCCTGAAAGCTGTAACCAACAGTAGCAGGAACATGGAACAAT
ATATCAGGTTTTCCACCAGGACTAACATTTGACTGTCTAACTGACCTCCT
ATTCCAGGTGGATAGCATATCATTTAGCTCTCTTTGGATGACTGGCATAA
AACAGAACAAAAGCAACTCTTTGTGAGACTCTAATTCTCCATTAAAAAGA
CCTTCTGATTCCATGGTCCTGAAAAGTTGTATCCACCAATTTGTACGATA
ACGTTTAAGTCTTGACCAAAATGATTCAATTCGTTGATTCCTGACTGAAA
CAGAATTTATGCATCGGTTGTCTTCTCCAGTGAAAAACTCTTGCAAACGA
TTGCAATGTACATTTTCAGTTCCATTGTCCATTCTTAAAATCTTAGGGGC
TACTAGAAACCTCTTCAcacaattcaaaaataaattagccACAGCTATTG
GTTCATTGTTAGTGGTTGAAACACTTAGCCAAAGTATTTTCCTGCTGAAT
CCATCAATTCCACCGTGGATTGCAAATCCCCATTGCTTGAGCTTGTCATT
GCCATCAATGTGAAATATATGACCTGGCCCGTCAGTGTAATAAGAACGAC
GTTGAATAGTGCGACTTCTTCTTTGTTCTACACCCTCTGGATCAACTGTT
AGCAAGGCTAACCTTACCTTTTCTTTTGATGTATTGATGTTATACTTcaa
tgttaaattttcatacATTTGCCTATAGCCAACAAGAGACAGCGAAGTAC
CAATTTCATTCCTTATAGCTTCACAAAGTTGCTCGTGAGTTACATTACAT
TTTCGAGATAAAGATTGTTTTGCACATATGTTTTTCAAGTTTCTAAGGGT
CAAGTGCTTGCCATGATGCTGGTTTATTATTGAAACTATTTCATGATACT
TCAGTTTTGGTTGCACTTTGTAATAATAAACCACCAAGTCAGTCAAAGAA
AGCTGTTGATTTGGATCCAATAGTGTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000535XLOC_000535Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000910-proteinTCONS_00000910-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000910-exon-sc0000005-1491911889:273731..276455TCONS_00000910-exon-sc0000005-1491911889:273731..276455Clytia hemisphaericaexon
TCONS_00000910-exon-sc0000005-1510915933:273731..276455TCONS_00000910-exon-sc0000005-1510915933:273731..276455Clytia hemisphaericaexon
TCONS_00000910-exon-sc0000005-1575043694:273731..276455TCONS_00000910-exon-sc0000005-1575043694:273731..276455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:273731..276455 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225633 0.316348 0.543027 0.484346 11.3092 8.56434 7.28477 8.63525 5.68141 7.32204 3.2887 3.39239 2.32753 1.67556 0.112111 0.197757 0.148344 0.0976803 0.0899371 0.156855 0.245512 0.339504 0.129386 0.0735101 6.73315 8.68682 0.290177 0.206508 0.219162 0.191373
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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