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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000910 ID=TCONS_00000910|Name=TCONS_00000910|organism=Clytia hemisphaerica|type=transcript|length=2725bp
AAAAGGGGCTcccaattttattttgatcctAGGTCTAGATATAATTAAGG
AAGccaaaaaagattattttgaCGTGTAAAgactaaaaaagtaaaaaata
cccATTTATAGCCCATTGCTTGTAAGAAAAGTAGGGATAATTAGGTGAAA
gaaatttttggctcaaaacctCTAGCAATGGTCTCAAGTAAAACAGGGTG
GCCAGCGATACtggaaatacttgaaaatacttgaatatactggaaaaaaa
attgatacttgattatacttcaaattttgataaaagtgtTATTTTTAAAG
TATATACTGGAAATGAAAATCTCTAATACTGGAATATACTTGATTTTATC
ATTCATGATGCCGCGGAGGTCAAATCCTGGATTGGTGTCCAGCGCGGGAT
AACTCATCACCCTTTTTCGTTATATTGTTTGTGAAATTTTAGTCGAGTAT
GTACTTGAATATACTTATTTTTCTTGGTCCAAGatacttgaaaattttga
aaatgtacttgaaaaatggaaaaaaattgtaaaaatgtacTTGATTTTAC
TGGAAATTGGATTCCCGAAATCGCTGGCCACCCTGTAAAACTTACTGACA
CTTTTTTAGTACTAAGATTCTGAAGCTAAAGTATGTCAATTTGAAGTCTT
GAATCTTGAGGTATCACAAAGACATAATTATTGAAATTAATATAAACAGA
ACTAAAAAATTTCAAGCATGATTATCTCAATATTAGAATATagaaaaggg
agaaaaaaatttggaggtttttcTCAGAATAACTAAAAAAAAACTGagga
ccaaatttcataacttacctgattatccctttaaagtaAATAAAGCACAA
ATTAATAGCATGGAGACACTATTGGATCCAAATCAACAGCTTTCTTTGAC
TGACTTGGTGGTTTATTATTACAAAGTGCAACCAAAACTGAAGTATCATG
AAATAGTTTCAATAATAAACCAGCATCATGGCAAGCACTTGACCCTTAGA
AACTTGAAAAACATATGTGCAAAACAATCTTTATCTCGAAAATGTAATGT
AACTCACGAGCAACTTTGTGAAGCTATAAGGAATGAAATTGGTACTTCGC
TGTCTCTTGTTGGCTATAGGCAAATgtatgaaaatttaacattgAAGTAT
AACATCAATACATCAAAAGAAAAGGTAAGGTTAGCCTTGCTAACAGTTGA
TCCAGAGGGTGTAGAACAAAGAAGAAGTCGCACTATTCAACGTCGTTCTT
ATTACACTGACGGGCCAGGTCATATATTTCACATTGATGGCAATGACAAG
CTCAAGCAATGGGGATTTGCAATCCACGGTGGAATTGATGGATTCAGCAG
GAAAATACTTTGGCTAAGTGTTTCAACCACTAACAATGAACCAATAGCTG
TggctaatttatttttgaattgtgTGAAGAGGTTTCTAGTAGCCCCTAAG
ATTTTAAGAATGGACAATGGAACTGAAAATGTACATTGCAATCGTTTGCA
AGAGTTTTTCACTGGAGAAGACAACCGATGCATAAATTCTGTTTCAGTCA
GGAATCAACGAATTGAATCATTTTGGTCAAGACTTAAACGTTATCGTACA
AATTGGTGGATACAACTTTTCAGGACCATGGAATCAGAAGGTCTTTTTAA
TGGAGAATTAGAGTCTCACAAAGAGTTGCTTTTGTTCTGTTTTATGCCAG
TCATCCAAAGAGAGCTAAATGATATGCTATCCACCTGGAATAGGAGGTCA
GTTAGACAGTCAAATGTTAGTCCTGGTGGAAAACCTGATATATTGTTCCA
TGTTCCTGCTACTGTTGGTTACAGCTTTCAGGGAACTCCAGTTGAACTAG
AAGACATAAACGTTGCATCAGATTTGATTGGAATTATACAGcaaccattt
ttcaaaagtaaagagCTCTATGACTTGCTAATGAGCTATTCTGTATTGCA
TGGTTTATCACAATTTAATAACGCAGAAGATTCACTTGAAAACTATGTGA
GACTACTTAACTTGTTACAAAATGATGGTGTatatttttaactcaaatac
ATTTCTATAATTTATGCTTGTTATGTTTTTTTAGTCAAGATATTTTGCAA
TTGTCACACTCATAGTGAATTAGCGATCTATTTTAAACCTTTGAGGTTAG
ATCGCATGTGCGGGTTGCAAATAAAACCCATTTTGTCAGCTTGATGAAAC
TCATACAAATTGTACAGGAAGCAGGTTTAAATAGGCTCTCTCGGTTCTGT
TATTAGTACACtttgaattttgtaaacatCAGGGCTGGAAAAATTCAGAC
CAAAGAGGAAAAATATCTGCTTATCACTAGAGGTTATACATTGCTACTCT
CAAgtgcctaataaacggggggttaaAATAGACAGggggatggaaaaaat
tttcaaatctaatAAACAGGACCCCTAACTACTTTATCTggattaaatta
aaattttttggatttaatttCCCGAGTCAAGAGTTTCAGAAATTtcacgt
ggatttaatttcgcgaatccaCACGTTTTcacgagttttaatttcgcgaa
aagggcaaaaaatcgcgaaaccgcaaaatttaatctcataaaaatttaat
ccgattaaaatACCTAATTACAACCTAATTaccagggggttggaaaatgt
tCTCCTGAACACCCTTACATAGGGTAAAATTAAGCTGAAAATAAGGCCAT
TTATAGCAAAATGAGGGACTTTCAC Run BLAST on NCBI protein sequence of TCONS_00000910-protein >TCONS_00000910-protein ID=TCONS_00000910-protein|Name=TCONS_00000910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
METLLDPNQQLSLTDLVVYYYKVQPKLKYHEIVSIINQHHGKHLTLRNLK
NICAKQSLSRKCNVTHEQLCEAIRNEIGTSLSLVGYRQMYENLTLKYNIN
TSKEKVRLALLTVDPEGVEQRRSRTIQRRSYYTDGPGHIFHIDGNDKLKQ
WGFAIHGGIDGFSRKILWLSVSTTNNEPIAVANLFLNCVKRFLVAPKILR
MDNGTENVHCNRLQEFFTGEDNRCINSVSVRNQRIESFWSRLKRYRTNWW
IQLFRTMESEGLFNGELESHKELLLFCFMPVIQRELNDMLSTWNRRSVRQ
SNVSPGGKPDILFHVPATVGYSFQGTPVELEDINVASDLIGIIQQPFFKS
KELYDLLMSYSVLHGLSQFNNAEDSLENYVRLLNLLQNDGVYF Run BLAST on NCBI transcript from alignment at sc0000005:273731..276455 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000910 ID=TCONS_00000910|Name=TCONS_00000910|organism=Clytia hemisphaerica|type=transcript|length=2725bp|location=Sequence derived from alignment at sc0000005:273731..276455 (Clytia hemisphaerica)
GTGAAAGTCCCTCATTTTGCTATAAATGGCCTTATTTTCAGCTTAATTTT
ACCCTATGTAAGGGTGTTCAGGAGaacattttccaaccccctggtAATTA
GGTTGTAATTAGGTattttaatcggattaaatttttatgagattaaattt
tgcggtttcgcgattttttgcccttttcgcgaaattaaaactcgtgAAAA
CGTGtggattcgcgaaattaaatccacgtgaAATTTCTGAAACTCTTGAC
TCGGGaaattaaatccaaaaaattttaatttaatccAGATAAAGTAGTTA
GGGGTCCTGTTTattagatttgaaaattttttccatccccCTGTCTATTt
taaccccccgtttattaggcacTTGAGAGTAGCAATGTATAACCTCTAGT
GATAAGCAGATATTTTTCCTCTTTGGTCTGAATTTTTCCAGCCCTGatgt
ttacaaaattcaaaGTGTACTAATAACAGAACCGAGAGAGCCTATTTAAA
CCTGCTTCCTGTACAATTTGTATGAGTTTCATCAAGCTGACAAAATGGGT
TTTATTTGCAACCCGCACATGCGATCTAACCTCAAAGGTTTAAAATAGAT
CGCTAATTCACTATGAGTGTGACAATTGCAAAATATCTTGACTAAAAAAA
CATAACAAGCATAAATTATAGAAATgtatttgagttaaaaatatACACCA
TCATTTTGTAACAAGTTAAGTAGTCTCACATAGTTTTCAAGTGAATCTTC
TGCGTTATTAAATTGTGATAAACCATGCAATACAGAATAGCTCATTAGCA
AGTCATAGAGctctttacttttgaaaaatggttgCTGTATAATTCCAATC
AAATCTGATGCAACGTTTATGTCTTCTAGTTCAACTGGAGTTCCCTGAAA
GCTGTAACCAACAGTAGCAGGAACATGGAACAATATATCAGGTTTTCCAC
CAGGACTAACATTTGACTGTCTAACTGACCTCCTATTCCAGGTGGATAGC
ATATCATTTAGCTCTCTTTGGATGACTGGCATAAAACAGAACAAAAGCAA
CTCTTTGTGAGACTCTAATTCTCCATTAAAAAGACCTTCTGATTCCATGG
TCCTGAAAAGTTGTATCCACCAATTTGTACGATAACGTTTAAGTCTTGAC
CAAAATGATTCAATTCGTTGATTCCTGACTGAAACAGAATTTATGCATCG
GTTGTCTTCTCCAGTGAAAAACTCTTGCAAACGATTGCAATGTACATTTT
CAGTTCCATTGTCCATTCTTAAAATCTTAGGGGCTACTAGAAACCTCTTC
AcacaattcaaaaataaattagccACAGCTATTGGTTCATTGTTAGTGGT
TGAAACACTTAGCCAAAGTATTTTCCTGCTGAATCCATCAATTCCACCGT
GGATTGCAAATCCCCATTGCTTGAGCTTGTCATTGCCATCAATGTGAAAT
ATATGACCTGGCCCGTCAGTGTAATAAGAACGACGTTGAATAGTGCGACT
TCTTCTTTGTTCTACACCCTCTGGATCAACTGTTAGCAAGGCTAACCTTA
CCTTTTCTTTTGATGTATTGATGTTATACTTcaatgttaaattttcatac
ATTTGCCTATAGCCAACAAGAGACAGCGAAGTACCAATTTCATTCCTTAT
AGCTTCACAAAGTTGCTCGTGAGTTACATTACATTTTCGAGATAAAGATT
GTTTTGCACATATGTTTTTCAAGTTTCTAAGGGTCAAGTGCTTGCCATGA
TGCTGGTTTATTATTGAAACTATTTCATGATACTTCAGTTTTGGTTGCAC
TTTGTAATAATAAACCACCAAGTCAGTCAAAGAAAGCTGTTGATTTGGAT
CCAATAGTGTCTCCATGCTATTAATTTGTGCTTTATTtactttaaaggga
taatcaggtaagttatgaaatttggtcctCAGTTTTTTTTTAGTTATTCT
GAgaaaaacctccaaatttttttctcccttttctATATTCTAATATTGAG
ATAATCATGCTTGAAATTTTTTAGTTCTGTTTATATTAATTTCAATAATT
ATGTCTTTGTGATACCTCAAGATTCAAGACTTCAAATTGACATACTTTAG
CTTCAGAATCTTAGTACTAAAAAAGTGTCAGTAAGTTTTACAGGGTGGCC
AGCGATTTCGGGAATCCAATTTCCAGTAAAATCAAgtacatttttacaat
ttttttccatttttcaagtacattttcaaaattttcaagtatCTTGGACC
AAGAAAAATAAGTATATTCAAGTACATACTCGACTAAAATTTCACAAACA
ATATAACGAAAAAGGGTGATGAGTTATCCCGCGCTGGACACCAATCCAGG
ATTTGACCTCCGCGGCATCATGAATGATAAAATCAAGTATATTCCAGTAT
TAGAGATTTTCATTTCCAGTATATACTTTAAAAATAacacttttatcaaa
atttgaagtataatcaagtatcaattttttttccagtatattcaagtatt
ttcaagtatttccaGTATCGCTGGCCACCCTGTTTTACTTGAGACCATTG
CTAGaggttttgagccaaaaatttcTTTCACCTAATTATCCCTACTTTTC
TTACAAGCAATGGGCTATAAATgggtattttttacttttttagtcTTTAC
ACGtcaaaataatcttttttggCTTCCTTAATTATATCTAGACCTaggat
caaaataaaattgggAGCCCCTTTT Coding sequence (CDS) from alignment at sc0000005:273731..276455 >TCONS_00000910 ID=TCONS_00000910|Name=TCONS_00000910|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000005:273731..276455 (Clytia hemisphaerica)
ttaaaaatatACACCATCATTTTGTAACAAGTTAAGTAGTCTCACATAGT
TTTCAAGTGAATCTTCTGCGTTATTAAATTGTGATAAACCATGCAATACA
GAATAGCTCATTAGCAAGTCATAGAGctctttacttttgaaaaatggttg
CTGTATAATTCCAATCAAATCTGATGCAACGTTTATGTCTTCTAGTTCAA
CTGGAGTTCCCTGAAAGCTGTAACCAACAGTAGCAGGAACATGGAACAAT
ATATCAGGTTTTCCACCAGGACTAACATTTGACTGTCTAACTGACCTCCT
ATTCCAGGTGGATAGCATATCATTTAGCTCTCTTTGGATGACTGGCATAA
AACAGAACAAAAGCAACTCTTTGTGAGACTCTAATTCTCCATTAAAAAGA
CCTTCTGATTCCATGGTCCTGAAAAGTTGTATCCACCAATTTGTACGATA
ACGTTTAAGTCTTGACCAAAATGATTCAATTCGTTGATTCCTGACTGAAA
CAGAATTTATGCATCGGTTGTCTTCTCCAGTGAAAAACTCTTGCAAACGA
TTGCAATGTACATTTTCAGTTCCATTGTCCATTCTTAAAATCTTAGGGGC
TACTAGAAACCTCTTCAcacaattcaaaaataaattagccACAGCTATTG
GTTCATTGTTAGTGGTTGAAACACTTAGCCAAAGTATTTTCCTGCTGAAT
CCATCAATTCCACCGTGGATTGCAAATCCCCATTGCTTGAGCTTGTCATT
GCCATCAATGTGAAATATATGACCTGGCCCGTCAGTGTAATAAGAACGAC
GTTGAATAGTGCGACTTCTTCTTTGTTCTACACCCTCTGGATCAACTGTT
AGCAAGGCTAACCTTACCTTTTCTTTTGATGTATTGATGTTATACTTcaa
tgttaaattttcatacATTTGCCTATAGCCAACAAGAGACAGCGAAGTAC
CAATTTCATTCCTTATAGCTTCACAAAGTTGCTCGTGAGTTACATTACAT
TTTCGAGATAAAGATTGTTTTGCACATATGTTTTTCAAGTTTCTAAGGGT
CAAGTGCTTGCCATGATGCTGGTTTATTATTGAAACTATTTCATGATACT
TCAGTTTTGGTTGCACTTTGTAATAATAAACCACCAAGTCAGTCAAAGAA
AGCTGTTGATTTGGATCCAATAGTGTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000910-exon-sc0000005-1491911889:273731..276455 | TCONS_00000910-exon-sc0000005-1491911889:273731..276455 | Clytia hemisphaerica | exon |
| TCONS_00000910-exon-sc0000005-1510915933:273731..276455 | TCONS_00000910-exon-sc0000005-1510915933:273731..276455 | Clytia hemisphaerica | exon |
| TCONS_00000910-exon-sc0000005-1575043694:273731..276455 | TCONS_00000910-exon-sc0000005-1575043694:273731..276455 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:273731..276455 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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