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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000909 ID=TCONS_00000909|Name=TCONS_00000909|organism=Clytia hemisphaerica|type=transcript|length=3522bp
NCCCCCCAAGAATCTCTGACCGCGCCACGGAAAACTGGGtaatattcgct
tcgcaaaaaccaCCCTGAGCAAGAACCAACCCGCCAGATAAACCGCCTTC
GTTGATGCGAACCACCCCGGCGaattctatgttcgacgacgacttCTATG
Tccctatgtccggccaagacctctatgtccggccaagacctctatgttcg
acgacgacctctatgtccggccaagacctctatgttNgacgacgacctct
atgttcgacgacggcttatcatttcggattattgAACCCGATCCCCCCTG
ATAATTAACCGCCGTGGTTATAGAGCGATAACGttatttgcggcccgctc
ggaacttGATGGAAGCCGTTGCATTGAAGCTGAGTGACTTTGACTGAAGG
CtagacaaaacatttttttctcatttgcgGCCCACTCGGAACTTGATGGA
AGCCGTTGCATTGAAGCTGAGTGACTTTGACTGAAGGCtagacaaaacat
ttttttctcatttgcgGCCCACTCGGAACTTgcttgaagtcattgcattg
aagcgataaGACTTGCTGATGTTAGACAAAACCTTTATTtgaataagtaa
gtaagtctgcgaccgcaaagggcgacccgaaggctccactttcgatagct
atctacccaaaggtaggggagggcgccactctttctccctggatttctcc
acttacccttgatccttctcttagctgctgagcatcaagcagagaggcat
caagtatcattttggaaatctttggtatgacccggctgggggttgaaccc
acaaccttgcgaaccgtagccggatgctctaccactgtactacggtcacT
CTAGTGTCAATGACACTgtcgggctaataatcaaactccgcgggcagaaa
ataacagcaacgacctcaaactgaacgctattgttatattaatgaaaata
ttttcaattagaCCTACTCTAAAAAATTCTGTTTCCGCGTtaccgggtga
cgaaaaaaatcTCATGCGGGAAGCcggaaaaaattatcttttacactttt
tctaaGATGCGATGTTCAaaaactgtaatttttttgttaagTTTGTTTTT
TCATAGTTTTGGAAGTTTTCACACCCATTCTAAAGTCTAAATTATTCTAA
AGCATTTTTTTGCAGTCTATAAGGGAAGGAGGGATTAGGGAGGATGGGTG
ATTCCAAACCGAATGATATAAGATAAGAGGGGTATGAATGTTCGATCTGA
GTATAAATGTGTTTGTGCTTAGACTAGCTTACAATCATTAACCTGGCTGG
GAAGCCAACTACCTGCGGAGAGATAATATGCGAACGGAGCGCGGGAGATT
GTTGAAATGACTTCCTCGGAATTAACACGAGCTAAATTCTTAGCTCTAAA
AATCACGAATACGGGGAAGGAACATGTTTCAGGCTAGTTCACTGGATAAA
AAAAGGTGGGTGAAAACGTTAGTTTATCTGCTGGCAGCTGTAGAAATTTT
CCAGTTGTGTGATAAATATTGAAAGATacttattatattatattacatAA
TTGCTTACTCGAAACAATAAAGATGACACGTTCTTCAGAAAATGGTAAAT
ATCTAATAAAACGTCTCAATACACAAAAGCaagttaacgaccaatccaat
gacgAAAATTCCTGCAATATGTTCAACTTAACCTAAATTTTCTTTCGACA
GGTTAATATCCTCaaggttgaaaatatttaactcTTTCGATTCCGCCCCA
GCTAAAATCGTTCCATTTTCGAGGACCTTATTCAAAAAACTGGCACGCTG
AAAAGATAGCCCTTGAAATGGGCTTTCCAACGAACCCAAACATGGCCTTA
TTTGCTTTAGAGGACGTCTATCAAAataatcctgcattactaaaaataga
caaacaatagaaaaacgacaaaaaacgaCAATACTGACTGACTAGTTAGG
TTAActaaagacaaaaagaacgacaactTTCGCcctccacaaccccgacc
gaaagtgactgtaccaccccacTACTTGTGGTgttaaaaaacgacaaatt
acgcatgcgtgttagaTATGCAGGATTATTTAGTCGAACTGACTGTTAGC
CAAGATAATTCGATTCAAAGTTGACAAGtttcaaaaacgaaaaaactaGA
ATTTTGGTATAGAAGGAGTTAAACATCTTATAGAAAACGATAACGGAATT
TGGCCTGGACTGCGCATCAAAAATGGGACTTGGTTGTTCATCATCATTGA
TCGACCACAGTCGAGACAATGGATTCGACTCGCTGACGCCAGGAGCCGCG
GTCGCGCATAGCAGTACTCAGATCATCAAATTGAAGCCCAGTGTCACTGC
ATACTGTGTCTGGGTAAGTTAACTTTCTAGATTTTTGAGGGAGTAATTTG
GGTTTCCACAACAAGAGAAATGAAATTACCTGAGTTTAAAATCgattggg
tcggtttaaaaCGCGATTGGTTCAGTTTGAAACGCAATATAGGTCAAAAC
AATTAAGGGAAATTTAAATGTCAATTGGTCAACTTTTATTGCATGTGTCa
ttaaaagctaaaaaaagttataaaactTTTGTAAATTAATGTCCGAAGAG
AATTTAACCCTCTTTTGCACATGACATAAGGAATTTGCACTTCACGTAGA
GGCTTTTCGAAGAAACGCTTGCATACGAAATCTATCTAAACGTGACAAAC
CCTACTACCGTCAGTTACATAAAGAAGTAGGGTTTGGCACAGGCTAGGGA
TATATGTAATAAAAATGGCGCGTTGTTGAAATTCTTATactactttaacc
ggattaactTTCGCTAGATAAAGTTTCGCGAggtcaaaaattcgcgaaat
gttgcgcataaactttcgcgaattggaGCTATCCCAAAATTTCGcgagat
aaactttcgcgaatgaagaaattgattaaaaaacaaaccaccaaaccaca
gaacccagccaactcccaagggtctaNATTTCGcgagataaactttcgcg
aatgaagaaattgattaaaaaacaaaccaccaaaccacagaacccagCCA
ACTCCCATGGGTCTAGTTCTCACCAGGGCCATGCAATAGTAAGGATTtga
ccatttggaagtggctcaatagctccagaggtcgagaaattaAGAATTGG
AAATGGAATTGGAAAAGTTGCAGAATTTCGCgagataaactttcgcaaat
gagcaattttagatttttcgcgagacaaattttcgcaaaaaagggcaaaa
ttcGCGAAACTCGCTAAAGTTtatctcgcgaaagttaatccgaagTACTT
TCTAGATTAAGTTTAGGtaggaatttttctaaattagaaGAAAGTAAAAT
AAGGAACAGACTTGTTTTGTAGAAACCGATCGTTAATTAAATACATCTAT
TGGACCTTTGGTTTTTTGGCTTGGTGTTTTGGAAAAGTTGGTACCAAAAA
ATCGGCGCTTAGCTTTATCATAATTAGATCTAGTGAAATGTGACATTTTC
CAGACCATACTTAGGAGGACTT Run BLAST on NCBI transcript from alignment at sc0000005:260228..263749 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000909 ID=TCONS_00000909|Name=TCONS_00000909|organism=Clytia hemisphaerica|type=transcript|length=3522bp|location=Sequence derived from alignment at sc0000005:260228..263749 (Clytia hemisphaerica)
AAGTCCTCCTAAGTATGGTCTGGAAAATGTCACATTTCACTAGATCTAAT
TATGATAAAGCTAAGCGCCGATTTTTTGGTACCAACTTTTCCAAAACACC
AAGCCAAAAAACCAAAGGTCCAATAGATGTATTTAATTAACGATCGGTTT
CTACAAAACAAGTCTGTTCCTTATTTTACTTTCttctaatttagaaaaat
tcctaCCTAAACTTAATCTAGAAAGTActtcggattaactttcgcgagat
aAACTTTAGCGAGTTTCGCgaattttgcccttttttgcgaaaatttgtct
cgcgaaaaatctaaaattgctcatttgcgaaagtttatctcGCGAAATTC
TGCAACTTTTCCAATTCCATTTCCAATTCTtaatttctcgacctctggag
ctattgagccacttccaaatggtcaAATCCTTACTATTGCATGGCCCTGG
TGAGAACTAGACCCATGGGAGTTGGctgggttctgtggtttggtggtttg
ttttttaatcaatttcttcattcgcgaaagtttatctcgCGAAATNtaga
cccttgggagttggctgggttctgtggtttggtggtttgttttttaatca
atttcttcattcgcgaaagtttatctcgCGAAATTTTGGGATAGCtccaa
ttcgcgaaagtttatgcgcaacatttcgcgaatttttgaccTCGCGAAAC
TTTATCTAGCGAAagttaatccggttaaagtagtATAAGAATTTCAACAA
CGCGCCATTTTTATTACATATATCCCTAGCCTGTGCCAAACCCTACTTCT
TTATGTAACTGACGGTAGTAGGGTTTGTCACGTTTAGATAGATTTCGTAT
GCAAGCGTTTCTTCGAAAAGCCTCTACGTGAAGTGCAAATTCCTTATGTC
ATGTGCAAAAGAGGGTTAAATTCTCTTCGGACATTAATTTACAAAagttt
tataactttttttagcttttaatGACACATGCAATAAAAGTTGACCAATT
GACATTTAAATTTCCCTTAATTGTTTTGACCTATATTGCGTTTCAAACTG
AACCAATCGCGttttaaaccgacccaatcGATTTTAAACTCAGGTAATTT
CATTTCTCTTGTTGTGGAAACCCAAATTACTCCCTCAAAAATCTAGAAAG
TTAACTTACCCAGACACAGTATGCAGTGACACTGGGCTTCAATTTGATGA
TCTGAGTACTGCTATGCGCGACCGCGGCTCCTGGCGTCAGCGAGTCGAAT
CCATTGTCTCGACTGTGGTCGATCAATGATGATGAACAACCAAGTCCCAT
TTTTGATGCGCAGTCCAGGCCAAATTCCGTTATCGTTTTCTATAAGATGT
TTAACTCCTTCTATACCAAAATTCtagttttttcgtttttgaaaCTTGTC
AACTTTGAATCGAATTATCTTGGCTAACAGTCAGTTCGACTAAATAATCC
TGCATAtctaacacgcatgcgtaatttgtcgttttttaacACCACAAGTA
gtggggtggtacagtcactttcggtcggggttgtggaggGCGAAagttgt
cgttctttttgtctttagTTAACCTAACTAGTCAGTCAGTATTGtcgttt
tttgtcgtttttctattgtttgtctatttttagtaatgcaggattatTTT
GATAGACGTCCTCTAAAGCAAATAAGGCCATGTTTGGGTTCGTTGGAAAG
CCCATTTCAAGGGCTATCTTTTCAGCGTGCCAGTTTTTTGAATAAGGTCC
TCGAAAATGGAACGATTTTAGCTGGGGCGGAATCGAAAgagttaaatatt
ttcaaccttGAGGATATTAACCTGTCGAAAGAAAATTTAGGTTAAGTTGA
ACATATTGCAGGAATTTTcgtcattggattggtcgttaacttGCTTTTGT
GTATTGAGACGTTTTATTAGATATTTACCATTTTCTGAAGAACGTGTCAT
CTTTATTGTTTCGAGTAAGCAATTatgtaatataatataataagtATCTT
TCAATATTTATCACACAACTGGAAAATTTCTACAGCTGCCAGCAGATAAA
CTAACGTTTTCACCCACCTTTTTTTATCCAGTGAACTAGCCTGAAACATG
TTCCTTCCCCGTATTCGTGATTTTTAGAGCTAAGAATTTAGCTCGTGTTA
ATTCCGAGGAAGTCATTTCAACAATCTCCCGCGCTCCGTTCGCATATTAT
CTCTCCGCAGGTAGTTGGCTTCCCAGCCAGGTTAATGATTGTAAGCTAGT
CTAAGCACAAACACATTTATACTCAGATCGAACATTCATACCCCTCTTAT
CTTATATCATTCGGTTTGGAATCACCCATCCTCCCTAATCCCTCCTTCCC
TTATAGACTGCAAAAAAATGCTTTAGAATAATTTAGACTTTAGAATGGGT
GTGAAAACTTCCAAAACTATGAAAAAACAAActtaacaaaaaaattacag
ttttTGAACATCGCATCttagaaaaagtgtaaaagataattttttccgGC
TTCCCGCATGAgatttttttcgtcacccggtaACGCGGAAACAGAATTTT
TTAGAGTAGGtctaattgaaaatattttcattaatataacaatagcgttc
agtttgaggtcgttgctgttattttctgcccgcggagtttgattattagc
ccgacAGTGTCATTGACACTAGAgtgaccgtagtacagtggtagagcatc
cggctacggttcgcaaggttgtgggttcaacccccagccgggtcatacca
aagatttccaaaatgatacttgatgcctctctgcttgatgctcagcagct
aagagaaggatcaagggtaagtggagaaatccagggagaaagagtggcgc
cctcccctacctttgggtagatagctatcgaaagtggagccttcgggtcg
ccctttgcggtcgcagacttacttacttattcaAATAAAGGTTTTGTCTA
ACATCAGCAAGTCttatcgcttcaatgcaatgacttcaagcAAGTTCCGA
GTGGGCcgcaaatgagaaaaaaatgttttgtctaGCCTTCAGTCAAAGTC
ACTCAGCTTCAATGCAACGGCTTCCATCAAGTTCCGAGTGGGCcgcaaat
gagaaaaaaatgttttgtctaGCCTTCAGTCAAAGTCACTCAGCTTCAAT
GCAACGGCTTCCATCaagttccgagcgggccgcaaataaCGTTATCGCTC
TATAACCACGGCGGTTAATTATCAGGGGGGATCGGGTTcaataatccgaa
atgataagccgtcgtcgaacatagaggtcgtcgtcNaacatagaggtctt
ggccggacatagaggtcgtcgtcgaacatagaggtcttggccggacatag
aggtcttggccggacatagggACATAGaagtcgtcgtcgaacatagaatt
CGCCGGGGTGGTTCGCATCAACGAAGGCGGTTTATCTGGCGGGTTGGTTC
TTGCTCAGGGtggtttttgcgaagcgaatattaCCCAGTTTTCCGTGGCG
CGGTCAGAGATTCTTGGGGGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000909-exon-sc0000005-1491911889:260228..263749 | TCONS_00000909-exon-sc0000005-1491911889:260228..263749 | Clytia hemisphaerica | exon |
| TCONS_00000909-exon-sc0000005-1510915933:260228..263749 | TCONS_00000909-exon-sc0000005-1510915933:260228..263749 | Clytia hemisphaerica | exon |
| TCONS_00000909-exon-sc0000005-1575043694:260228..263749 | TCONS_00000909-exon-sc0000005-1575043694:260228..263749 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:260228..263749 . |
Blast
The following BLAST results are available for this feature:
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