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TCONS_00000909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000909
Unique NameTCONS_00000909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000909 ID=TCONS_00000909|Name=TCONS_00000909|organism=Clytia hemisphaerica|type=transcript|length=3522bp
NCCCCCCAAGAATCTCTGACCGCGCCACGGAAAACTGGGtaatattcgct
tcgcaaaaaccaCCCTGAGCAAGAACCAACCCGCCAGATAAACCGCCTTC
GTTGATGCGAACCACCCCGGCGaattctatgttcgacgacgacttCTATG
Tccctatgtccggccaagacctctatgtccggccaagacctctatgttcg
acgacgacctctatgtccggccaagacctctatgttNgacgacgacctct
atgttcgacgacggcttatcatttcggattattgAACCCGATCCCCCCTG
ATAATTAACCGCCGTGGTTATAGAGCGATAACGttatttgcggcccgctc
ggaacttGATGGAAGCCGTTGCATTGAAGCTGAGTGACTTTGACTGAAGG
CtagacaaaacatttttttctcatttgcgGCCCACTCGGAACTTGATGGA
AGCCGTTGCATTGAAGCTGAGTGACTTTGACTGAAGGCtagacaaaacat
ttttttctcatttgcgGCCCACTCGGAACTTgcttgaagtcattgcattg
aagcgataaGACTTGCTGATGTTAGACAAAACCTTTATTtgaataagtaa
gtaagtctgcgaccgcaaagggcgacccgaaggctccactttcgatagct
atctacccaaaggtaggggagggcgccactctttctccctggatttctcc
acttacccttgatccttctcttagctgctgagcatcaagcagagaggcat
caagtatcattttggaaatctttggtatgacccggctgggggttgaaccc
acaaccttgcgaaccgtagccggatgctctaccactgtactacggtcacT
CTAGTGTCAATGACACTgtcgggctaataatcaaactccgcgggcagaaa
ataacagcaacgacctcaaactgaacgctattgttatattaatgaaaata
ttttcaattagaCCTACTCTAAAAAATTCTGTTTCCGCGTtaccgggtga
cgaaaaaaatcTCATGCGGGAAGCcggaaaaaattatcttttacactttt
tctaaGATGCGATGTTCAaaaactgtaatttttttgttaagTTTGTTTTT
TCATAGTTTTGGAAGTTTTCACACCCATTCTAAAGTCTAAATTATTCTAA
AGCATTTTTTTGCAGTCTATAAGGGAAGGAGGGATTAGGGAGGATGGGTG
ATTCCAAACCGAATGATATAAGATAAGAGGGGTATGAATGTTCGATCTGA
GTATAAATGTGTTTGTGCTTAGACTAGCTTACAATCATTAACCTGGCTGG
GAAGCCAACTACCTGCGGAGAGATAATATGCGAACGGAGCGCGGGAGATT
GTTGAAATGACTTCCTCGGAATTAACACGAGCTAAATTCTTAGCTCTAAA
AATCACGAATACGGGGAAGGAACATGTTTCAGGCTAGTTCACTGGATAAA
AAAAGGTGGGTGAAAACGTTAGTTTATCTGCTGGCAGCTGTAGAAATTTT
CCAGTTGTGTGATAAATATTGAAAGATacttattatattatattacatAA
TTGCTTACTCGAAACAATAAAGATGACACGTTCTTCAGAAAATGGTAAAT
ATCTAATAAAACGTCTCAATACACAAAAGCaagttaacgaccaatccaat
gacgAAAATTCCTGCAATATGTTCAACTTAACCTAAATTTTCTTTCGACA
GGTTAATATCCTCaaggttgaaaatatttaactcTTTCGATTCCGCCCCA
GCTAAAATCGTTCCATTTTCGAGGACCTTATTCAAAAAACTGGCACGCTG
AAAAGATAGCCCTTGAAATGGGCTTTCCAACGAACCCAAACATGGCCTTA
TTTGCTTTAGAGGACGTCTATCAAAataatcctgcattactaaaaataga
caaacaatagaaaaacgacaaaaaacgaCAATACTGACTGACTAGTTAGG
TTAActaaagacaaaaagaacgacaactTTCGCcctccacaaccccgacc
gaaagtgactgtaccaccccacTACTTGTGGTgttaaaaaacgacaaatt
acgcatgcgtgttagaTATGCAGGATTATTTAGTCGAACTGACTGTTAGC
CAAGATAATTCGATTCAAAGTTGACAAGtttcaaaaacgaaaaaactaGA
ATTTTGGTATAGAAGGAGTTAAACATCTTATAGAAAACGATAACGGAATT
TGGCCTGGACTGCGCATCAAAAATGGGACTTGGTTGTTCATCATCATTGA
TCGACCACAGTCGAGACAATGGATTCGACTCGCTGACGCCAGGAGCCGCG
GTCGCGCATAGCAGTACTCAGATCATCAAATTGAAGCCCAGTGTCACTGC
ATACTGTGTCTGGGTAAGTTAACTTTCTAGATTTTTGAGGGAGTAATTTG
GGTTTCCACAACAAGAGAAATGAAATTACCTGAGTTTAAAATCgattggg
tcggtttaaaaCGCGATTGGTTCAGTTTGAAACGCAATATAGGTCAAAAC
AATTAAGGGAAATTTAAATGTCAATTGGTCAACTTTTATTGCATGTGTCa
ttaaaagctaaaaaaagttataaaactTTTGTAAATTAATGTCCGAAGAG
AATTTAACCCTCTTTTGCACATGACATAAGGAATTTGCACTTCACGTAGA
GGCTTTTCGAAGAAACGCTTGCATACGAAATCTATCTAAACGTGACAAAC
CCTACTACCGTCAGTTACATAAAGAAGTAGGGTTTGGCACAGGCTAGGGA
TATATGTAATAAAAATGGCGCGTTGTTGAAATTCTTATactactttaacc
ggattaactTTCGCTAGATAAAGTTTCGCGAggtcaaaaattcgcgaaat
gttgcgcataaactttcgcgaattggaGCTATCCCAAAATTTCGcgagat
aaactttcgcgaatgaagaaattgattaaaaaacaaaccaccaaaccaca
gaacccagccaactcccaagggtctaNATTTCGcgagataaactttcgcg
aatgaagaaattgattaaaaaacaaaccaccaaaccacagaacccagCCA
ACTCCCATGGGTCTAGTTCTCACCAGGGCCATGCAATAGTAAGGATTtga
ccatttggaagtggctcaatagctccagaggtcgagaaattaAGAATTGG
AAATGGAATTGGAAAAGTTGCAGAATTTCGCgagataaactttcgcaaat
gagcaattttagatttttcgcgagacaaattttcgcaaaaaagggcaaaa
ttcGCGAAACTCGCTAAAGTTtatctcgcgaaagttaatccgaagTACTT
TCTAGATTAAGTTTAGGtaggaatttttctaaattagaaGAAAGTAAAAT
AAGGAACAGACTTGTTTTGTAGAAACCGATCGTTAATTAAATACATCTAT
TGGACCTTTGGTTTTTTGGCTTGGTGTTTTGGAAAAGTTGGTACCAAAAA
ATCGGCGCTTAGCTTTATCATAATTAGATCTAGTGAAATGTGACATTTTC
CAGACCATACTTAGGAGGACTT
Run BLAST on NCBI

transcript from alignment at sc0000005:260228..263749

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000909 ID=TCONS_00000909|Name=TCONS_00000909|organism=Clytia hemisphaerica|type=transcript|length=3522bp|location=Sequence derived from alignment at sc0000005:260228..263749 (Clytia hemisphaerica)
AAGTCCTCCTAAGTATGGTCTGGAAAATGTCACATTTCACTAGATCTAAT TATGATAAAGCTAAGCGCCGATTTTTTGGTACCAACTTTTCCAAAACACC AAGCCAAAAAACCAAAGGTCCAATAGATGTATTTAATTAACGATCGGTTT CTACAAAACAAGTCTGTTCCTTATTTTACTTTCttctaatttagaaaaat tcctaCCTAAACTTAATCTAGAAAGTActtcggattaactttcgcgagat aAACTTTAGCGAGTTTCGCgaattttgcccttttttgcgaaaatttgtct cgcgaaaaatctaaaattgctcatttgcgaaagtttatctcGCGAAATTC TGCAACTTTTCCAATTCCATTTCCAATTCTtaatttctcgacctctggag ctattgagccacttccaaatggtcaAATCCTTACTATTGCATGGCCCTGG TGAGAACTAGACCCATGGGAGTTGGctgggttctgtggtttggtggtttg ttttttaatcaatttcttcattcgcgaaagtttatctcgCGAAATNtaga cccttgggagttggctgggttctgtggtttggtggtttgttttttaatca atttcttcattcgcgaaagtttatctcgCGAAATTTTGGGATAGCtccaa ttcgcgaaagtttatgcgcaacatttcgcgaatttttgaccTCGCGAAAC TTTATCTAGCGAAagttaatccggttaaagtagtATAAGAATTTCAACAA CGCGCCATTTTTATTACATATATCCCTAGCCTGTGCCAAACCCTACTTCT TTATGTAACTGACGGTAGTAGGGTTTGTCACGTTTAGATAGATTTCGTAT GCAAGCGTTTCTTCGAAAAGCCTCTACGTGAAGTGCAAATTCCTTATGTC ATGTGCAAAAGAGGGTTAAATTCTCTTCGGACATTAATTTACAAAagttt tataactttttttagcttttaatGACACATGCAATAAAAGTTGACCAATT GACATTTAAATTTCCCTTAATTGTTTTGACCTATATTGCGTTTCAAACTG AACCAATCGCGttttaaaccgacccaatcGATTTTAAACTCAGGTAATTT CATTTCTCTTGTTGTGGAAACCCAAATTACTCCCTCAAAAATCTAGAAAG TTAACTTACCCAGACACAGTATGCAGTGACACTGGGCTTCAATTTGATGA TCTGAGTACTGCTATGCGCGACCGCGGCTCCTGGCGTCAGCGAGTCGAAT CCATTGTCTCGACTGTGGTCGATCAATGATGATGAACAACCAAGTCCCAT TTTTGATGCGCAGTCCAGGCCAAATTCCGTTATCGTTTTCTATAAGATGT TTAACTCCTTCTATACCAAAATTCtagttttttcgtttttgaaaCTTGTC AACTTTGAATCGAATTATCTTGGCTAACAGTCAGTTCGACTAAATAATCC TGCATAtctaacacgcatgcgtaatttgtcgttttttaacACCACAAGTA gtggggtggtacagtcactttcggtcggggttgtggaggGCGAAagttgt cgttctttttgtctttagTTAACCTAACTAGTCAGTCAGTATTGtcgttt tttgtcgtttttctattgtttgtctatttttagtaatgcaggattatTTT GATAGACGTCCTCTAAAGCAAATAAGGCCATGTTTGGGTTCGTTGGAAAG CCCATTTCAAGGGCTATCTTTTCAGCGTGCCAGTTTTTTGAATAAGGTCC TCGAAAATGGAACGATTTTAGCTGGGGCGGAATCGAAAgagttaaatatt ttcaaccttGAGGATATTAACCTGTCGAAAGAAAATTTAGGTTAAGTTGA ACATATTGCAGGAATTTTcgtcattggattggtcgttaacttGCTTTTGT GTATTGAGACGTTTTATTAGATATTTACCATTTTCTGAAGAACGTGTCAT CTTTATTGTTTCGAGTAAGCAATTatgtaatataatataataagtATCTT TCAATATTTATCACACAACTGGAAAATTTCTACAGCTGCCAGCAGATAAA CTAACGTTTTCACCCACCTTTTTTTATCCAGTGAACTAGCCTGAAACATG TTCCTTCCCCGTATTCGTGATTTTTAGAGCTAAGAATTTAGCTCGTGTTA ATTCCGAGGAAGTCATTTCAACAATCTCCCGCGCTCCGTTCGCATATTAT CTCTCCGCAGGTAGTTGGCTTCCCAGCCAGGTTAATGATTGTAAGCTAGT CTAAGCACAAACACATTTATACTCAGATCGAACATTCATACCCCTCTTAT CTTATATCATTCGGTTTGGAATCACCCATCCTCCCTAATCCCTCCTTCCC TTATAGACTGCAAAAAAATGCTTTAGAATAATTTAGACTTTAGAATGGGT GTGAAAACTTCCAAAACTATGAAAAAACAAActtaacaaaaaaattacag ttttTGAACATCGCATCttagaaaaagtgtaaaagataattttttccgGC TTCCCGCATGAgatttttttcgtcacccggtaACGCGGAAACAGAATTTT TTAGAGTAGGtctaattgaaaatattttcattaatataacaatagcgttc agtttgaggtcgttgctgttattttctgcccgcggagtttgattattagc ccgacAGTGTCATTGACACTAGAgtgaccgtagtacagtggtagagcatc cggctacggttcgcaaggttgtgggttcaacccccagccgggtcatacca aagatttccaaaatgatacttgatgcctctctgcttgatgctcagcagct aagagaaggatcaagggtaagtggagaaatccagggagaaagagtggcgc cctcccctacctttgggtagatagctatcgaaagtggagccttcgggtcg ccctttgcggtcgcagacttacttacttattcaAATAAAGGTTTTGTCTA ACATCAGCAAGTCttatcgcttcaatgcaatgacttcaagcAAGTTCCGA GTGGGCcgcaaatgagaaaaaaatgttttgtctaGCCTTCAGTCAAAGTC ACTCAGCTTCAATGCAACGGCTTCCATCAAGTTCCGAGTGGGCcgcaaat gagaaaaaaatgttttgtctaGCCTTCAGTCAAAGTCACTCAGCTTCAAT GCAACGGCTTCCATCaagttccgagcgggccgcaaataaCGTTATCGCTC TATAACCACGGCGGTTAATTATCAGGGGGGATCGGGTTcaataatccgaa atgataagccgtcgtcgaacatagaggtcgtcgtcNaacatagaggtctt ggccggacatagaggtcgtcgtcgaacatagaggtcttggccggacatag aggtcttggccggacatagggACATAGaagtcgtcgtcgaacatagaatt CGCCGGGGTGGTTCGCATCAACGAAGGCGGTTTATCTGGCGGGTTGGTTC TTGCTCAGGGtggtttttgcgaagcgaatattaCCCAGTTTTCCGTGGCG CGGTCAGAGATTCTTGGGGGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000534XLOC_000534Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000909-exon-sc0000005-1491911889:260228..263749TCONS_00000909-exon-sc0000005-1491911889:260228..263749Clytia hemisphaericaexon
TCONS_00000909-exon-sc0000005-1510915933:260228..263749TCONS_00000909-exon-sc0000005-1510915933:260228..263749Clytia hemisphaericaexon
TCONS_00000909-exon-sc0000005-1575043694:260228..263749TCONS_00000909-exon-sc0000005-1575043694:260228..263749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:260228..263749 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.367917 0.496243 0.515558 0.872527 0.918825 0.832734 1.83811 1.53517 1.18903 1.4496 1.75625 1.08404 1.49823 1.86975 0.444294 0.663148 0.612264 0.460911 0.375116 0.345015 0.74262 0.851104 0.254733 0.416278 3.17737 3.92119 0.646556 0.899242 0.64839 0.639768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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