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TCONS_00000885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000885
Unique NameTCONS_00000885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000885 ID=TCONS_00000885|Name=TCONS_00000885|organism=Clytia hemisphaerica|type=transcript|length=3707bp
TTGAGAAATATTACTTCAATGCTGATAGAAAAGGCTGCAAGAATTATTCC
TTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATTTAT
AGAACAgataagaaatttttttaatagaaagTTAAAAGAGGAACtgaaaa
ggaaatcaaaagGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAGCAA
TTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAAGAC
TTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATTTTT
ACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTAGTA
ATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGGTAT
TGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTATGAT
AATAACCCATATCCTGGCTTCAATCTGGccTATGAAAGTTTGGACGAAGG
TGAACAGAGGCTTTTGAAATATCTGAAGAATTTTAGCGTGAACTCGAGGC
CAGTCAATATCTCATCAACAGCTGTATACGTTAATGTTACCATGGAAATT
GTTCGACTCGATGCCGTGAGTGAAAAGGGACAGTCTGTTCGGATGAAATT
ACATATTAATTATctttGGAGGAACCCATATTTAGTATGGAATCCGCTTA
ACTATAAAGGTGTTTCCGAAGTCATTTTACCCGAAGGTGAAATCTGGATA
CCGCCCATACGCCTCTTCAATGAAGCGAGCAAAACACAAGGTGAATACAA
TGAGGACAATCACGCGCGGACCGTGCTTCTAACGAATGATGGCAACTGTT
CACTAACCTATGCCCAGTTCTTCAAATCCACATGCGAAATTGATGTCAGT
GATTTTCCATTTGACCAGCAATATTGCGATATGACGTTTGGTAGTTGGAG
TATGGATGAACGGTTGCTACAACTGAGAGCTGTCAAGGAAGAAGCTATAT
CTGAGCAATTGTACAAGGAAAATGGTGAATGGCATTTAACTGAAGCCACA
TTGAAGACCCATGATGTCAGATATCCGATTCACCGTCACAAACACAGCAC
CATCAAACTCTCCATACTCATAAAGCGAAAGTACATCTTTTTCATCATGA
ATTTGGTGGTACCATGTGCTCTCATTGCATGCATGATTTTCTTGGTGTTT
GTACTACCAGCCAAATCAGGAGAAAGAATCTCTCTTGGTATTACTGTCAT
GTTATCTATGGCTATCTTTCAAGAATTGTCGTCAGAGAAATTGCCAAGTA
GTTCTGATAACTATCCGTTACTTGgtgtTTATTACACGACTTCAATGTTT
GAAATTGGTATTGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTACTA
TCGCAACTATGAAATGCAGCCGTGGATGCGTCGATTGTTATTCGATAAAC
TCGCTCGACTCGTTCGAATCGATATCCCACATACTCGAACGCAGCATTAC
ATTGATCGAATGTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGCTGA
AACCACCCTCAATAATACGGCGCACAATGCTCACAATATTGACGGTGAAT
CGGCACTTGGTAACGGGAACGGAGAAATGTcatattttccaaaatcgacG
CTCCATCGGGAAGACACACAGACTATTCAACGGAAAACCAAGAAGTTTTC
TGTCAACCAAAACGGCAGCAGTAGCGATTTGACGTACACCAAATCGAATT
TGTCGGCAAAAATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGTATC
GAAGAGCGAAAACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAATTCT
AGATCGCTGTATGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAGCAC
TTACCATTTTTATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCTTGA
GAATGCTCTCACTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGCCAT
CTGTTGTTGCTATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGGAGA
AAGAAAGATGGTAGCACCATTACGTATTGCTAAGGTTGGTAACCCTTGGT
TACAGGAGACCTCGTTTCATGGGTTGTATAAATGACACAGATACAATATC
TATAAAAGCGAAAATTTGTTTCTACCGCAAAATAAAATGACTGAGTTGAA
ATGGTTTAGATAATGAGCTTATTAAACAAACAAAGCTAACTTATTATTAA
TAATGCTTAGCTGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCACTT
TCAAATCAAGGCCGCTTTTTACATTACGTGCTTGATGCAAAAACATAAAG
AATGGCTTTGGCGAAACAATCTTGGCCCAAACATACAATCAAAGTAAAAG
CGTCTCTTTGCNaataattaacataatatatgcatggatcgtgcatcgtg
catcgtgaatcgttggatcgcgcatcgtaaatagacgatatcgcgtttag
ataaatgcaatgcattctggtttctcggggactctcaaaggaattataat
gtcGATTATATAATAATCtggaatagattataattcccttgagggtcccc
gagaaaccagaatgcattgcatttatctaaacgcgatatcgtctattact
cTGGTAcatctttttgtatttttcgtGTTGAGGACGGCAGCCTTGAGAAA
TGAGTACCATTTAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTTTTC
AAATTCGCCGTAATTAGATTATACATTATATCTGGAAAAAGAACTTGATA
CAGTTTTTGGGTCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCGTGA
TAAAAAACTTATTTGGAACAATAATTTCTTCATAGTACAGTTAAACATTT
TGTAtgacttcaattttcaattcttttactGGACATAGATATGCATTGCA
AAAACAAgtcaggctcggatacagagggaggctataaccaatggaggaga
gtgcactttatcatcgtattaccttatatggaaactaattactctccacg
aataagatagcctacctcctgtatccgacacTGNAtgacttcaattttca
attcCTTTACTGGACATAGATATGCATTGCAAAAACAAGTCTTTTTTCAG
TTGATTTTAAATTTATACGATTTGATACATAACATATTATTCTATATGAT
ACGGTAGTCGTATTGGTCGGAAAGTTTTTGGAATTCCTcacaaaaatttg
ataaattaaaGGTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAATGA
AAACTGCAATTGCAAACTGGCTGCAATTTGGACGTAGTTATCACACTCCC
GACAGCTTAAATTTATAatataaataaacaaatttttaattaactGGAAT
TTGGATTTCTAAGTTTTAGTACCAGATATGAAATCCAAATGCTCGACTAG
ATTGCAAATCTGTAAGAATTCATGCGACAGATATATTACGACTTTAAATT
CGTGACTTAAAAAAGACATAATTTAAATTAGcactatttatttatttatt
tattgaacatttgtcaatattttgctttaatttattgtttttatagtAAT
AAGTGTCGATTCTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGACCC
TCGTGAGTCCTGGGACGATGACcaatttacatgtttttttataagcataa
aaaattc
Run BLAST on NCBI

transcript from alignment at sc0000005:1369793..1379694-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000885 ID=TCONS_00000885|Name=TCONS_00000885|organism=Clytia hemisphaerica|type=transcript|length=9902bp|location=Sequence derived from alignment at sc0000005:1369793..1379694- (Clytia hemisphaerica)
TTGAGAAATATTACTTCAATGCTGATAGAAAAGGCTGCAAGAATTATTCC TTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATTTAT AGAACAGATAAGAAATTTTTTTAATAGAAAGTTAAAAGAGGAACTGAAAA GGAAATCAAAAGGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAGCAA TTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAAGAC TTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATTTTT ACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTAGTA ATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGGTAT TGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTATGAT AATAACCCATATCCTGGCTTCAATCTGGGTATGTTTGGCAATCGTGGATA TTATTTTAATCTAGGTCCGTTGTAGTCATTCATTGCTTCGTTCATTTTTT AACCTCGTTGCCTCTCTCAAACTGTTTCATATATATACCAGCCAGTCTGT TTACCATAAGTGTTAAATCATCTGGCTTTTTCATATGGAAACCATATCAG TATGATTTAAACTGAGTTTGTTTGTGGGTGGTTTCCACCTGGTAGCAAGA AAAGTGCACTCTAATGAGAGCTGGAATATCCGATTCTTTGCTTACTTTCG GCTAGTACGATTTTTTGAATCTGTCGGTAAATATTACCTTCAATCAAACT TAATTGAACAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACACCTT TTCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTTGTCCGTTA ATCACCCTAAAACCGTCCCAGTCTTTNTCCGATTCTTTGCTTACTTTCGG CTAGTACGATTTTTTGAATCTGTCGGTAAATGTTACCTTCAATCAAACTT AAGTGAATAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACACCTTT TCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTGTCCGCTTTA CCACCCTAAAACCGTTCCAGTCTTTTTTTTGCACCTATAGGCAATAGAAA AAAGTCTAAAAAAGCATTAGACTAGCAAACTAGTCTGTTAATTAATCATA TCAGAGGGGGGGACATAAAGGCGGCGGGCGTTTGCTAGAATAGGAGCTGC GTAGGAGAGCGAGCAAAAGTTAGTGAGAGGCTGCTGATTAATAGGCACGT ACCTGACCGCGCGACTACGGTCGAAAAGGTGTATCAAACTTATGTGTCCT TTCCCATCCGTCATCTTTATAGATTTGATATTTTATAAAGATGATCATTT CTCCCTATATTGTTGTCACAAATCGAACAGTTTGGTGCATCCAGACTTTC AAGCTCTTTCTCAGCCAAAACCATAAGATTTAACATTAAATTATATCGTT GTCGATTTGATCATAGACTTCACAGCCGTGATTTATTCAAACCCCTGTTA TTTTCATTTTTTAGCCTATGAAAGTTTGGACGAAGGTGAACAGAGGCTTT TGAAATATCTGAAGAATTTTAGCGTGAACTCGAGGCCAGTCAATATCTCA TCAACAGCTGTATACGTTAATGTTACCATGGAAATTGTTCGACTCGATGC CGTGGTAGGTTTTACTCATATAGCCCGGTTTTTTTATTAGTTATCGGGTG TGTAAAATCCTGCTTTGGGCGAGGTTTTATCGATTTGGAAAGGAGCGGAA AATGACATTCGGTCTCCACATGACGTTTTTTCGGTCAATGAAATTGCAAG TAACTTGACTGTCGGATAAGCTTCATATTTTCTGCAAGGCTGACGTATAA CCGGATAAGATTTACATATTTTCTCTAAAGTCTACTTATAGTGTAAAAGC TTTTACCCCCAACTAAGAGGTCTTAATAAACATTCGGTTGTCTGGTGATT GTATATTGATGGTTGTCTATAGTTAGGGACTGTACACCCTGGTAGAGGAG CAGATTATTTTCGTCTTTTTTAAATCACTTATTGGTTTCCTTACGACTTT ATTAAAAGCAAAGACTATTCGATTCTTAGTTTCCATCTGCTTTGACTACC CTTACTAGTAATATAGATATTGGGTGTAACAATATGGTCGAATATATTCG TATACCGGCGCCGTCTCTAGTTTAAGAATCAGTTCTTTATCTCGTCTAGA TTTTTATTTCTAAAGATCCTCATCTTATTGTCCCCCATATGAACCCTTCA AATTATTTCATTTTCTTTTCAAATATTCGTAGATTATTTTATCTTAGGTT TTCTTCCTTTATTTTCTTATAGAGTGAAAAGGGACAGTCTGTTCGGATGA AATTACATATTAATTATGTAAGTAATGAAACATTTTGTGTCTAACTTTTT TATCCCTAAACTAACCCTCCTTATCTGATCTCTAAGACTGAGAGTACACT ATCCAGTTTTATCATCTCTACCATTGTTGCCGGCACCATGAAGTCATATA GGGCCAGATAGGCAAACTTTAAGCTTTCCCAGTAGAGTAAAAACAAAAGA TTGTGCCCTTTTTGTATCGGTTACCGGTAATCTTTTTCTTATTTTCAGCT TTGGAGGAACCCATATTTAGTATGGAATCCGCTTAACTATAAAGGTGTTT CCGAAGTCATTTTACCCGAAGGTGAAATCTGGATACCGCCCATACGCCTC TTCAATGAGTAAGCACATTTTTCATCACCCTAAAACGCCCTGAAATATTA AAAATCGAAATTGAGAATGAACTTTATTTGGTAGTCCAATTCAGTTAAAT TGCGCCCCTGTTGCCAACTGTCTTTTTTTCCCCTCTTTGTAATTATTTTC CCTGAAAATGTTCCTGGAAGCTCAACTTACATCATTTTAGGGGCCTCGAA TTCATCCAAGTTTTTTTTCTGTAGGATTTCCTACAAAAAACTAAAAGTCC CAAGACATTTTGACGTTCAACAAACAGCCGCTTTCAACTTTATCTACCGT CTTTATTGTTCGAAATCTCTTGCACTGCGATCCTTTTGCCACCTTTCCTC TTCTTTTCCTCTTTCTTCAAACTCGCCCTTTTTTACCCACAGTTTTAATT TATTTTAAAGAAAGAAATGTTGTAAATGCCTAATGGGGCATTATTCTTTT TCGCCGTAATGAAACCAACTGCACCTAAGATAGTGATTCCACTGAAGTAC AGAAAACTAGTAAAGAATCTCAATTAGTATTATTGCATTAATTTTCAAAA GATTAACTTTTGTGTTTTTGCGAATTTCGGCGAAATTGCCGACTCAGGGA ATTAAATCCACGCATTCTGTAACTCTTTTTTTTCGAGGGAAAATAACACT CGAAATCTTCTTTACGGAAAATTGGGATCTTTTTTAGCTGATTTTTAGTC CAGAAATTTTAGGCATTACTAACGGGCAAAATAATCTTTCTCGTTAAAAT CATCAAGACAATCCCTAAAAATGATGCTGAAAAATATTTCTCTTTGAATT TCCTGACTGACTTAGAGAAGTCTCTAAATACGGGAATATTGCTTTCTTTT AAAAAGAAAAACTGTTTTTATAATGACTCTCTTGGTTAGGGGTTAGTTCC AAGAATCTTTCTTAGCTTTTATCCAACAAGACTAGAAAAGAAAAAATAAT ATTTAAACAGCGGTTTTGATCTGAATATTCTTTCCCAAAAAATTTGTTCT ATATTTAGGGTACTATTAGGCAGGTGCCTCAAAAGAAATATGTAGATGTT AATTTTTTATTCTCGCCCCCTCTTTTTCATATCATTTCTTCCACATTTAC TTTTCACTTAAAAATATATTTGGAAAAAGTCATATCAGTACGAAAAGATT AATTTTATACATTTAGAATGCGTACACTTTACTTTCCGAAAAAAAAACCC ATGGGGCCTAAAAATAGAACAAAAGATACAATGCTAGTAAAACACCCAAA AGCCTGGAGCTATCCTATTATGTAGATTTTCACATCCTCGAATTAAAAAA CACTTTCAAAATATTATAAACCTTTTTTACCCTGGTGATTTTTAGAAAAC TAAAACTTTGTACCTTTCCTATCTTCCAAGCTTTTCAATTCTTTCATGCA GAGCGAGCAAAACACAAGGTGAATACAATGAGGACAATCACGCGCGGACC GTGCTTCTAACGAATGATGGCAACTGTTCACTAACCTATGCCCAGTTCTT CAAATCCACATGCGAAATTGATGTCAGTGATTTTCCATTTGACCAGCAAT ATTGCGATATGACGTTTGGTAGTTGGAGTATGGATGAACGGTTGCTACAA CTGAGAGCTGTCAAGGAAGAAGCTATATCTGAGCAATTGTACAAGGAAAA TGGTGAATGGCATTTAACTGAAGCCACATTGAAGACCCATGATGTACGTT TTCCTTGATCATATTTTTAGTTTTAGTTGAATTTCGGTTTCTGGAAAGAG TACCACTTCCAGACTAGAATCCAGTTGTATTCTTAGAATTAAGAGTAGAT GTACAATCAAATTGTAAGACAAAGTAGAATACAAGCTTCACCCCCTCCCC NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNGTCCCCCCCGTTTATTGAAATTTCAAAAATTT TCCAACCCCCCCGTTTATTCCAACCCCCCGTTTATTTGGCACCTAAGAGT AAGTCCATGATTGTATAAACGTCATCGATCAAAGGTGTAACCTTTTGTTT TGGTGCTTTATAAATTTTTACGATTAAATCTTAAACCTGCTAGCCTAGAA GAGGACTAGTAAGTACTCTTAGAATGAAAATAAGAATTGTATTCTGAGGG AATTCTTAGTTTCAATTACTATCAACCAGACAGATCTTCCTCGATTTTAA TAAATCATAGTAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTTAAC AAAAGAATTTCTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTCTTT TGTTTAAAGATAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATTCAA TGGGATTGGGGAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTATTT GATTATTTTCAGTGGGGACAAAAATTGGACGATGATTTTCCACCGGGGAC GATATTTTGGCAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTCAAA TCAAGGTAGTTTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGATAT CCGATTCACCGTCACAAACACAGCACCATCAAACTCTCCATACTCATAAA GCGAAAGTACATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTCTCA TTGCATGCATGATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGAGAA AGAATCTCTCTTGGTATTACTGTCATGTTATCTATGGCTATCTTTCAAGA ATTGTCGTCAGAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTACTTG GTATGTATTACTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGATAG ATTTTCAATTTTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTTCTA ACAATTTTTTTAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTTTTA AAAGCGTATGAGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAATCT TCACTCTTAATTAAAGAGTATGTCAGACATACAAGAATCACACATGGCAA TAACCTTTCTGTTATCAAAATTCATTACATNTTCTGAGGGAATTCTTAGT TTCAATTACTATCAACCAGACAGATCTTCCTCGATTTTAATAAATCATAG TAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTTAACAAAAGAATTT CTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTCTTTTGTTTAAAGA TAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATTCAATGGGATTGGG GAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTATTTGATTATTTTC AGTGGGGACAAAAATTGGACGATGATTTTCCACCGGGGACGATATTTTGG CAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTCAAATCAAGGTAGT TTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGATATCCGATTCACC GTCACAAACACAGCACCATCAAACTCTCCATACTCATAAAGCGAAAGTAC ATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTCTCATTGCATGCAT GATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGAGAAAGAATCTCTC TTGGTATTACTGTCATGTTATCTATGGCTATCTTTCAAGAATTGTCGTCA GAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTACTTGGTATGTATTA CTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGATAGATTTTCAATT TTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTTCTAACAATTTTTT TAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTTTTAAAAGCGTATG AGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAATCTTCACTCTTAA TTAAAGAGTATGTCAGACATACAAGAATCACACATGGCAATAACCTTTCT GTTATCAAAATTCATTACATTATGAAATTCCTGATCGAACTTGATCCACA TATTTCTTTTTATTTTCAGGTGTTTATTACACGACTTCAATGTTTGAAAT TGGTATTGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTACTATCGCA ACTATGAAATGCAGCCGTGGATGCGTCGATTGTTATTCGATAAACTCGCT CGACTCGTTCGAATCGATATCCCACATACTCGAACGCAGCATTACATTGA TCGAATGTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGCTGAAACCA CCCTCAATAATACGGCGCACAATGCTCACAATATTGACGGTGAATCGGCA CTTGGTAACGGGAACGGAGAAATGTCATATTTTCCAAAATCGACGCTCCA TCGGGAAGACACACAGACTATTCAACGGAAAACCAAGAAGTTTTCTGTCA ACCAAAACGGCAGCAGTAGCGATTTGACGTACACCAAATCGAATTTGTCG GCAAAAATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGTATCGAAGA GCGAAAACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAATTCTAGATC GCTGTATGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAGCACTTACC ATTTTTATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCTTGAGAATG CTCTCACTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGCCATCTGTT GTTGCTATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGGAGAAAGAA AGATGGTAGCACCATTACGTATTGCTAAGGTTGGTAACCCTTGGTTACAG GAGACCTCGTTTCATGGGTTGTATAAATGACACAGATACAATATCTATAA AAGCGAAAATTTGTTTCTACCGCAAAATAAAATGACTGAGTTGAAATGGT TTAGATAATGAGCTTATTAAACAAACAAAGCTAACTTATTATTAATAATG CTTAGCTGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCACTTTCAAA TCAAGGCCGCTTTTTACATTACGTGCTTGATGCAAAAACATAAAGAATGG CTTTGGCGAAACAATCTTGGCCCAAACATACAATCAAAGTAAAAGCGTCT CTTTGCNAATAATTAACATAATATATGCATGGATCGTGCATCGTGCATCG TGAATCGTTGGATCGCGCATCGTAAATAGACGATATCGCGTTTAGATAAA TGCAATGCATTCTGGTTTCTCGGGGACTCTCAAAGGAATTATAATGTCGA TTATATAATAATCTGGAATAGATTATAATTCCCTTGAGGGTCCCCGAGAA ACCAGAATGCATTGCATTTATCTAAACGCGATATCGTCTATTACTCTGGT ACATCTTTTTGTATTTTTCGTGTTGAGGACGGCAGCCTTGAGAAATGAGT ACCATTTAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTTTTCAAATT CGCCGTAATTAGATTATACATTATATCTGGAAAAAGAACTTGATACAGTT TTTGGGTCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCGTGATAAAA AACTTATTTGGAACAATAATTTCTTCATAGTACAGTTAAACATTTTGTAT GACTTCAATTTTCAATTCTTTTACTGGACATAGATATGCATTGCAAAAAC AAGTCAGGCTCGGATACAGAGGGAGGCTATAACCAATGGAGGAGAGTGCA CTTTATCATCGTATTACCTTATATGGAAACTAATTACTCTCCACGAATAA GATAGCCTACCTCCTGTATCCGACACTGNATGACTTCAATTTTCAATTCC TTTACTGGACATAGATATGCATTGCAAAAACAAGTCTTTTTTCAGTTGAT TTTAAATTTATACGATTTGATACATAACATATTATTCTATATGATACGGT AGTCGTATTGGTCGGAAAGTTTTTGGAATTCCTCACAAAAATTTGATAAA TTAAAGGTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAATGAAAACT GCAATTGCAAACTGGCTGCAATTTGGACGTAGTTATCACACTCCCGACAG CTTAAATTTATAATATAAATAAACAAATTTTTAATTAACTGGAATTTGGA TTTCTAAGTTTTAGTACCAGATATGAAATCCAAATGCTCGACTAGATTGC AAATCTGTAAGAATTCATGCGACAGATATATTACGACTTTAAATTCGTGA CTTAAAAAAGACATAATTTAAATTAGCACTATTTATTTATTTATTTATTG AACATTTGTCAATATTTTGCTTTAATTTATTGTTTTTATAGTAATAAGTG TCGATTCTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGACCCTCGTG AGTCCTGGGACGATGACCAATTTACATGTTTTTTTATAAGCATAAAAAAT TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000521XLOC_000521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000885-exon-sc0000005-1575043694:1379217..1379694TCONS_00000885-exon-sc0000005-1575043694:1379217..1379694Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1377991..1378130TCONS_00000885-exon-sc0000005-1575043694:1377991..1378130Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1377278..1377322TCONS_00000885-exon-sc0000005-1575043694:1377278..1377322Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1376937..1377046TCONS_00000885-exon-sc0000005-1575043694:1376937..1377046Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1375252..1375543TCONS_00000885-exon-sc0000005-1575043694:1375252..1375543Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1372505..1372763TCONS_00000885-exon-sc0000005-1575043694:1372505..1372763Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1575043694:1369793..1372175TCONS_00000885-exon-sc0000005-1575043694:1369793..1372175Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1379217..1379694TCONS_00000885-exon-sc0000005-1510915933:1379217..1379694Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1377991..1378130TCONS_00000885-exon-sc0000005-1510915933:1377991..1378130Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1377278..1377322TCONS_00000885-exon-sc0000005-1510915933:1377278..1377322Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1376937..1377046TCONS_00000885-exon-sc0000005-1510915933:1376937..1377046Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1375252..1375543TCONS_00000885-exon-sc0000005-1510915933:1375252..1375543Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1372505..1372763TCONS_00000885-exon-sc0000005-1510915933:1372505..1372763Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1510915933:1369793..1372175TCONS_00000885-exon-sc0000005-1510915933:1369793..1372175Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1379217..1379694TCONS_00000885-exon-sc0000005-1491911889:1379217..1379694Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1377991..1378130TCONS_00000885-exon-sc0000005-1491911889:1377991..1378130Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1377278..1377322TCONS_00000885-exon-sc0000005-1491911889:1377278..1377322Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1376937..1377046TCONS_00000885-exon-sc0000005-1491911889:1376937..1377046Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1375252..1375543TCONS_00000885-exon-sc0000005-1491911889:1375252..1375543Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1372505..1372763TCONS_00000885-exon-sc0000005-1491911889:1372505..1372763Clytia hemisphaericaexon
TCONS_00000885-exon-sc0000005-1491911889:1369793..1372175TCONS_00000885-exon-sc0000005-1491911889:1369793..1372175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1369793..1379694 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.128987 0 0 3.64829e-06 2.17084 0.635988 0.860085 0.860786 1.40699 0.569592 2.96783e-10 0 1.5837e-10 0.206467 1.31699e-09 0.802117 2.82272 1.28076 2.59719e-05 0 0 0.918277 0.719097 0 0.122028 0 0
Blast
BLAST of TCONS_00000885 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 207.608 bits (527), Expect = 7.155e-57
Identity = 144/498 (28.92%), Postives = 245/498 (49.20%), Query Frame = 1
Query:  496 EGEQRLLKYL-KNFSVNSRPVNISSTAVYVNVTMEIVRLDAVSEKGQSVRMKLHINYLWRNPYLVWNPLNYKGVSEVILPEGEIWIPPIRLFNEASKTQGEYNEDNHARTVLLTNDGNCSLTYAQFFKSTCEIDVSDFPFDQQYCDMTFGSWSMDERLLQLRAVKEEAISEQLYKENGEWHLTEATLKTHDVRYPIHRHKHSTIKLSILIKRKYIFFIMNLVVPCALIACMIFLVFVLPAKSGERISLGITVMLSMAIFQELSSEKLPSSSDNYPLLGVYYTTSMFEIGIALVMNCFILNVYYRNYE---MQPWMRRLLFDKLARLVRIDIP-----HTRTQHYIDRMSTG--QFRELNPXXXXXXXXXXXXXXXIDGESAL-----GNGNGEMSYFPKSTLH-REDTQTIQRKTKKFSVNQNGSSSDLTYTKSNLSAKISLSLSSDPSTRIEERKLLGEDWKTAARILDR-CMLAIAISVGVISALTIFMQAARFRE 1935
            E +++L K L KN++   RPV   S  + V  ++ ++++  V EK Q +   + +   W + YL WN   Y GV  V  P+G+IW P I L+N A +    ++   H   VL+ + G+C       FKS+C IDV  FPFD Q+C + FGSWS     L L+ ++E  IS   Y  NGEW L     K  +  Y   +  +  +  ++ ++R+ +++ +NL++PC LI+ +  LVF+LPA SGE+ISLGITV+LS+ +F  L +E +P++SD+ PL+  Y+ ++M  +G+++V+   +L  ++ + +   M  W R +L +  A  +R+  P         QH   R S    +   + P   +  N        +DG   +     G   G M+  P    H     Q  +       + +     ++ Y  +    +             +E + +  +WK AA ++DR C++A ++   +I  + I M A  F E
Sbjct:   24 EFQRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADE---RFDATFHT-NVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQ-MQEADISG--YIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHKQRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEHLLHGGQPPEGDPDLAKILE-----EVRYIANRFRCQ-------------DESEAVCSEWKFAACVVDRLCLMAFSV-FTIICTIGILMSAPNFVE 495          
The following BLAST results are available for this feature:
BLAST of TCONS_00000885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA77.155e-5728.92Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
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