|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000883 ID=TCONS_00000883|Name=TCONS_00000883|organism=Clytia hemisphaerica|type=transcript|length=3660bp TCCTTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATT TATAGAACAgataagaaatttttttaatagaaagTTAAAAGAGGAACtga aaaggaaatcaaaagGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAG CAATTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAA GACTTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATT TTTACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTA GTAATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGG TATTGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTAT GATAATAACCCATATCCTGGCTTCAATCTGGccTATGAAAGTTTGGACGA AGGTGAACAGAGGCTTTTGAAATATCTGAAGAATTTTAGCGTGAACTCGA GGCCAGTCAATATCTCATCAACAGCTGTATACGTTAATGTTACCATGGAA ATTGTTCGACTCGATGCCGTGAGTGAAAAGGGACAGTCTGTTCGGATGAA ATTACATATTAATTATctttGGAGGAACCCATATTTAGTATGGAATCCGC TTAACTATAAAGGTGTTTCCGAAGTCATTTTACCCGAAGGTGAAATCTGG ATACCGCCCATACGCCTCTTCAATGAAGCGAGCAAAACACAAGGTGAATA CAATGAGGACAATCACGCGCGGACCGTGCTTCTAACGAATGATGGCAACT GTTCACTAACCTATGCCCAGTTCTTCAAATCCACATGCGAAATTGATGTC AGTGATTTTCCATTTGACCAGCAATATTGCGATATGACGTTTGGTAGTTG GAGTATGGATGAACGGTTGCTACAACTGAGAGCTGTCAAGGAAGAAGCTA TATCTGAGCAATTGTACAAGGAAAATGGTGAATGGCATTTAACTGAAGCC ACATTGAAGACCCATGATGTCAGATATCCGATTCACCGTCACAAACACAG CACCATCAAACTCTCCATACTCATAAAGCGAAAGTACATCTTTTTCATCA TGAATTTGGTGGTACCATGTGCTCTCATTGCATGCATGATTTTCTTGGTG TTTGTACTACCAGCCAAATCAGGAGAAAGAATCTCTCTTGGTATTACTGT CATGTTATCTATGGCTATCTTTCAAGAATTGTCGTCAGAGAAATTGCCAA GTAGTTCTGATAACTATCCGTTACTTGgtgtTTATTACACGACTTCAATG TTTGAAATTGGTATTGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTA CTATCGCAACTATGAAATGCAGCCGTGGATGCGTCGATTGTTATTCGATA AACTCGCTCGACTCGTTCGAATCGATATCCCACATACTCGAACGCAGCAT TACATTGATCGAATGTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGC TGAAACCACCCTCAATAATACGGCGCACAATGCTCACAATATTGACGGTG AATCGGCACTTGGTAACGGGAACGGAGAAATGTcatattttccaaaatcg acGCTCCATCGGGAAGACACACAGACTATTCAACGGAAAACCAAGAAGTT TTCTGTCAACCAAAACGGCAGCAGTAGCGATTTGACGTACACCAAATCGA ATTTGTCGGCAAAAATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGT ATCGAAGAGCGAAAACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAAT TCTAGATCGCTGTATGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAG CACTTACCATTTTTATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCT TGAGAATGCTCTCACTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGC CATCTGTTGTTGCTATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGG AGAAAGAAAGATGGTAGCACCATTACGTATTGCTAAGGTTGGTAACCCTT GGTTACAGGAGACCTCGTTTCATGGGTTGTATAAATGACACAGATACAAT ATCTATAAAAGCGAAAATTTGTTTCTACCGCAAAATAAAATGACTGAGTT GAAATGGTTTAGATAATGAGCTTATTAAACAAACAAAGCTAACTTATTAT TAATAATGCTTAGCTGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCA CTTTCAAATCAAGGCCGCTTTTTACATTACGTGCTTGATGCAAAAACATA AAGAATGGCTTTGGCGAAACAATCTTGGCCCAAACATACAATCAAAGTAA AAGCGTCTCTTTGCNaataattaacataatatatgcatggatcgtgcatc gtgcatcgtgaatcgttggatcgcgcatcgtaaatagacgatatcgcgtt tagataaatgcaatgcattctggtttctcggggactctcaaaggaattat aatgtcGATTATATAATAATCtggaatagattataattcccttgagggtc cccgagaaaccagaatgcattgcatttatctaaacgcgatatcgtctatt actcTGGTAcatctttttgtatttttcgtGTTGAGGACGGCAGCCTTGAG AAATGAGTACCATTTAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTT TTCAAATTCGCCGTAATTAGATTATACATTATATCTGGAAAAAGAACTTG ATACAGTTTTTGGGTCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCG TGATAAAAAACTTATTTGGAACAATAATTTCTTCATAGTACAGTTAAACA TTTTGTAtgacttcaattttcaattcttttactGGACATAGATATGCATT GCAAAAACAAgtcaggctcggatacagagggaggctataaccaatggagg agagtgcactttatcatcgtattaccttatatggaaactaattactctcc acgaataagatagcctacctcctgtatccgacacTGNAtgacttcaattt tcaattcCTTTACTGGACATAGATATGCATTGCAAAAACAAGTCTTTTTT CAGTTGATTTTAAATTTATACGATTTGATACATAACATATTATTCTATAT GATACGGTAGTCGTATTGGTCGGAAAGTTTTTGGAATTCCTcacaaaaat ttgataaattaaaGGTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAA TGAAAACTGCAATTGCAAACTGGCTGCAATTTGGACGTAGTTATCACACT CCCGACAGCTTAAATTTATAatataaataaacaaatttttaattaactGG AATTTGGATTTCTAAGTTTTAGTACCAGATATGAAATCCAAATGCTCGAC TAGATTGCAAATCTGTAAGAATTCATGCGACAGATATATTACGACTTTAA ATTCGTGACTTAAAAAAGACATAATTTAAATTAGcactatttatttattt atttattgaacatttgtcaatattttgctttaatttattgtttttatagt AATAAGTGTCGATTCTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGA CCCTCGTGAGTCCTGGGACGATGACcaatttacatgtttttttataagca taaaaaattc Run BLAST on NCBI transcript from alignment at sc0000005:1369793..1379647- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000883 ID=TCONS_00000883|Name=TCONS_00000883|organism=Clytia hemisphaerica|type=transcript|length=9855bp|location=Sequence derived from alignment at sc0000005:1369793..1379647- (Clytia hemisphaerica) TCCTTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATT
TATAGAACAGATAAGAAATTTTTTTAATAGAAAGTTAAAAGAGGAACTGA
AAAGGAAATCAAAAGGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAG
CAATTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAA
GACTTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATT
TTTACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTA
GTAATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGG
TATTGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTAT
GATAATAACCCATATCCTGGCTTCAATCTGGGTATGTTTGGCAATCGTGG
ATATTATTTTAATCTAGGTCCGTTGTAGTCATTCATTGCTTCGTTCATTT
TTTAACCTCGTTGCCTCTCTCAAACTGTTTCATATATATACCAGCCAGTC
TGTTTACCATAAGTGTTAAATCATCTGGCTTTTTCATATGGAAACCATAT
CAGTATGATTTAAACTGAGTTTGTTTGTGGGTGGTTTCCACCTGGTAGCA
AGAAAAGTGCACTCTAATGAGAGCTGGAATATCCGATTCTTTGCTTACTT
TCGGCTAGTACGATTTTTTGAATCTGTCGGTAAATATTACCTTCAATCAA
ACTTAATTGAACAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACAC
CTTTTCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTTGTCCG
TTAATCACCCTAAAACCGTCCCAGTCTTTNTCCGATTCTTTGCTTACTTT
CGGCTAGTACGATTTTTTGAATCTGTCGGTAAATGTTACCTTCAATCAAA
CTTAAGTGAATAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACACC
TTTTCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTGTCCGCT
TTACCACCCTAAAACCGTTCCAGTCTTTTTTTTGCACCTATAGGCAATAG
AAAAAAGTCTAAAAAAGCATTAGACTAGCAAACTAGTCTGTTAATTAATC
ATATCAGAGGGGGGGACATAAAGGCGGCGGGCGTTTGCTAGAATAGGAGC
TGCGTAGGAGAGCGAGCAAAAGTTAGTGAGAGGCTGCTGATTAATAGGCA
CGTACCTGACCGCGCGACTACGGTCGAAAAGGTGTATCAAACTTATGTGT
CCTTTCCCATCCGTCATCTTTATAGATTTGATATTTTATAAAGATGATCA
TTTCTCCCTATATTGTTGTCACAAATCGAACAGTTTGGTGCATCCAGACT
TTCAAGCTCTTTCTCAGCCAAAACCATAAGATTTAACATTAAATTATATC
GTTGTCGATTTGATCATAGACTTCACAGCCGTGATTTATTCAAACCCCTG
TTATTTTCATTTTTTAGCCTATGAAAGTTTGGACGAAGGTGAACAGAGGC
TTTTGAAATATCTGAAGAATTTTAGCGTGAACTCGAGGCCAGTCAATATC
TCATCAACAGCTGTATACGTTAATGTTACCATGGAAATTGTTCGACTCGA
TGCCGTGGTAGGTTTTACTCATATAGCCCGGTTTTTTTATTAGTTATCGG
GTGTGTAAAATCCTGCTTTGGGCGAGGTTTTATCGATTTGGAAAGGAGCG
GAAAATGACATTCGGTCTCCACATGACGTTTTTTCGGTCAATGAAATTGC
AAGTAACTTGACTGTCGGATAAGCTTCATATTTTCTGCAAGGCTGACGTA
TAACCGGATAAGATTTACATATTTTCTCTAAAGTCTACTTATAGTGTAAA
AGCTTTTACCCCCAACTAAGAGGTCTTAATAAACATTCGGTTGTCTGGTG
ATTGTATATTGATGGTTGTCTATAGTTAGGGACTGTACACCCTGGTAGAG
GAGCAGATTATTTTCGTCTTTTTTAAATCACTTATTGGTTTCCTTACGAC
TTTATTAAAAGCAAAGACTATTCGATTCTTAGTTTCCATCTGCTTTGACT
ACCCTTACTAGTAATATAGATATTGGGTGTAACAATATGGTCGAATATAT
TCGTATACCGGCGCCGTCTCTAGTTTAAGAATCAGTTCTTTATCTCGTCT
AGATTTTTATTTCTAAAGATCCTCATCTTATTGTCCCCCATATGAACCCT
TCAAATTATTTCATTTTCTTTTCAAATATTCGTAGATTATTTTATCTTAG
GTTTTCTTCCTTTATTTTCTTATAGAGTGAAAAGGGACAGTCTGTTCGGA
TGAAATTACATATTAATTATGTAAGTAATGAAACATTTTGTGTCTAACTT
TTTTATCCCTAAACTAACCCTCCTTATCTGATCTCTAAGACTGAGAGTAC
ACTATCCAGTTTTATCATCTCTACCATTGTTGCCGGCACCATGAAGTCAT
ATAGGGCCAGATAGGCAAACTTTAAGCTTTCCCAGTAGAGTAAAAACAAA
AGATTGTGCCCTTTTTGTATCGGTTACCGGTAATCTTTTTCTTATTTTCA
GCTTTGGAGGAACCCATATTTAGTATGGAATCCGCTTAACTATAAAGGTG
TTTCCGAAGTCATTTTACCCGAAGGTGAAATCTGGATACCGCCCATACGC
CTCTTCAATGAGTAAGCACATTTTTCATCACCCTAAAACGCCCTGAAATA
TTAAAAATCGAAATTGAGAATGAACTTTATTTGGTAGTCCAATTCAGTTA
AATTGCGCCCCTGTTGCCAACTGTCTTTTTTTCCCCTCTTTGTAATTATT
TTCCCTGAAAATGTTCCTGGAAGCTCAACTTACATCATTTTAGGGGCCTC
GAATTCATCCAAGTTTTTTTTCTGTAGGATTTCCTACAAAAAACTAAAAG
TCCCAAGACATTTTGACGTTCAACAAACAGCCGCTTTCAACTTTATCTAC
CGTCTTTATTGTTCGAAATCTCTTGCACTGCGATCCTTTTGCCACCTTTC
CTCTTCTTTTCCTCTTTCTTCAAACTCGCCCTTTTTTACCCACAGTTTTA
ATTTATTTTAAAGAAAGAAATGTTGTAAATGCCTAATGGGGCATTATTCT
TTTTCGCCGTAATGAAACCAACTGCACCTAAGATAGTGATTCCACTGAAG
TACAGAAAACTAGTAAAGAATCTCAATTAGTATTATTGCATTAATTTTCA
AAAGATTAACTTTTGTGTTTTTGCGAATTTCGGCGAAATTGCCGACTCAG
GGAATTAAATCCACGCATTCTGTAACTCTTTTTTTTCGAGGGAAAATAAC
ACTCGAAATCTTCTTTACGGAAAATTGGGATCTTTTTTAGCTGATTTTTA
GTCCAGAAATTTTAGGCATTACTAACGGGCAAAATAATCTTTCTCGTTAA
AATCATCAAGACAATCCCTAAAAATGATGCTGAAAAATATTTCTCTTTGA
ATTTCCTGACTGACTTAGAGAAGTCTCTAAATACGGGAATATTGCTTTCT
TTTAAAAAGAAAAACTGTTTTTATAATGACTCTCTTGGTTAGGGGTTAGT
TCCAAGAATCTTTCTTAGCTTTTATCCAACAAGACTAGAAAAGAAAAAAT
AATATTTAAACAGCGGTTTTGATCTGAATATTCTTTCCCAAAAAATTTGT
TCTATATTTAGGGTACTATTAGGCAGGTGCCTCAAAAGAAATATGTAGAT
GTTAATTTTTTATTCTCGCCCCCTCTTTTTCATATCATTTCTTCCACATT
TACTTTTCACTTAAAAATATATTTGGAAAAAGTCATATCAGTACGAAAAG
ATTAATTTTATACATTTAGAATGCGTACACTTTACTTTCCGAAAAAAAAA
CCCATGGGGCCTAAAAATAGAACAAAAGATACAATGCTAGTAAAACACCC
AAAAGCCTGGAGCTATCCTATTATGTAGATTTTCACATCCTCGAATTAAA
AAACACTTTCAAAATATTATAAACCTTTTTTACCCTGGTGATTTTTAGAA
AACTAAAACTTTGTACCTTTCCTATCTTCCAAGCTTTTCAATTCTTTCAT
GCAGAGCGAGCAAAACACAAGGTGAATACAATGAGGACAATCACGCGCGG
ACCGTGCTTCTAACGAATGATGGCAACTGTTCACTAACCTATGCCCAGTT
CTTCAAATCCACATGCGAAATTGATGTCAGTGATTTTCCATTTGACCAGC
AATATTGCGATATGACGTTTGGTAGTTGGAGTATGGATGAACGGTTGCTA
CAACTGAGAGCTGTCAAGGAAGAAGCTATATCTGAGCAATTGTACAAGGA
AAATGGTGAATGGCATTTAACTGAAGCCACATTGAAGACCCATGATGTAC
GTTTTCCTTGATCATATTTTTAGTTTTAGTTGAATTTCGGTTTCTGGAAA
GAGTACCACTTCCAGACTAGAATCCAGTTGTATTCTTAGAATTAAGAGTA
GATGTACAATCAAATTGTAAGACAAAGTAGAATACAAGCTTCACCCCCTC
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTCCCCCCCGTTTATTGAAATTTCAAAAA
TTTTCCAACCCCCCCGTTTATTCCAACCCCCCGTTTATTTGGCACCTAAG
AGTAAGTCCATGATTGTATAAACGTCATCGATCAAAGGTGTAACCTTTTG
TTTTGGTGCTTTATAAATTTTTACGATTAAATCTTAAACCTGCTAGCCTA
GAAGAGGACTAGTAAGTACTCTTAGAATGAAAATAAGAATTGTATTCTGA
GGGAATTCTTAGTTTCAATTACTATCAACCAGACAGATCTTCCTCGATTT
TAATAAATCATAGTAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTT
AACAAAAGAATTTCTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTC
TTTTGTTTAAAGATAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATT
CAATGGGATTGGGGAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTA
TTTGATTATTTTCAGTGGGGACAAAAATTGGACGATGATTTTCCACCGGG
GACGATATTTTGGCAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTC
AAATCAAGGTAGTTTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGA
TATCCGATTCACCGTCACAAACACAGCACCATCAAACTCTCCATACTCAT
AAAGCGAAAGTACATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTC
TCATTGCATGCATGATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGA
GAAAGAATCTCTCTTGGTATTACTGTCATGTTATCTATGGCTATCTTTCA
AGAATTGTCGTCAGAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTAC
TTGGTATGTATTACTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGA
TAGATTTTCAATTTTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTT
CTAACAATTTTTTTAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTT
TTAAAAGCGTATGAGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAA
TCTTCACTCTTAATTAAAGAGTATGTCAGACATACAAGAATCACACATGG
CAATAACCTTTCTGTTATCAAAATTCATTACATNTTCTGAGGGAATTCTT
AGTTTCAATTACTATCAACCAGACAGATCTTCCTCGATTTTAATAAATCA
TAGTAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTTAACAAAAGAA
TTTCTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTCTTTTGTTTAA
AGATAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATTCAATGGGATT
GGGGAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTATTTGATTATT
TTCAGTGGGGACAAAAATTGGACGATGATTTTCCACCGGGGACGATATTT
TGGCAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTCAAATCAAGGT
AGTTTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGATATCCGATTC
ACCGTCACAAACACAGCACCATCAAACTCTCCATACTCATAAAGCGAAAG
TACATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTCTCATTGCATG
CATGATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGAGAAAGAATCT
CTCTTGGTATTACTGTCATGTTATCTATGGCTATCTTTCAAGAATTGTCG
TCAGAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTACTTGGTATGTA
TTACTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGATAGATTTTCA
ATTTTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTTCTAACAATTT
TTTTAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTTTTAAAAGCGT
ATGAGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAATCTTCACTCT
TAATTAAAGAGTATGTCAGACATACAAGAATCACACATGGCAATAACCTT
TCTGTTATCAAAATTCATTACATTATGAAATTCCTGATCGAACTTGATCC
ACATATTTCTTTTTATTTTCAGGTGTTTATTACACGACTTCAATGTTTGA
AATTGGTATTGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTACTATC
GCAACTATGAAATGCAGCCGTGGATGCGTCGATTGTTATTCGATAAACTC
GCTCGACTCGTTCGAATCGATATCCCACATACTCGAACGCAGCATTACAT
TGATCGAATGTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGCTGAAA
CCACCCTCAATAATACGGCGCACAATGCTCACAATATTGACGGTGAATCG
GCACTTGGTAACGGGAACGGAGAAATGTCATATTTTCCAAAATCGACGCT
CCATCGGGAAGACACACAGACTATTCAACGGAAAACCAAGAAGTTTTCTG
TCAACCAAAACGGCAGCAGTAGCGATTTGACGTACACCAAATCGAATTTG
TCGGCAAAAATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGTATCGA
AGAGCGAAAACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAATTCTAG
ATCGCTGTATGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAGCACTT
ACCATTTTTATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCTTGAGA
ATGCTCTCACTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGCCATCT
GTTGTTGCTATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGGAGAAA
GAAAGATGGTAGCACCATTACGTATTGCTAAGGTTGGTAACCCTTGGTTA
CAGGAGACCTCGTTTCATGGGTTGTATAAATGACACAGATACAATATCTA
TAAAAGCGAAAATTTGTTTCTACCGCAAAATAAAATGACTGAGTTGAAAT
GGTTTAGATAATGAGCTTATTAAACAAACAAAGCTAACTTATTATTAATA
ATGCTTAGCTGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCACTTTC
AAATCAAGGCCGCTTTTTACATTACGTGCTTGATGCAAAAACATAAAGAA
TGGCTTTGGCGAAACAATCTTGGCCCAAACATACAATCAAAGTAAAAGCG
TCTCTTTGCNAATAATTAACATAATATATGCATGGATCGTGCATCGTGCA
TCGTGAATCGTTGGATCGCGCATCGTAAATAGACGATATCGCGTTTAGAT
AAATGCAATGCATTCTGGTTTCTCGGGGACTCTCAAAGGAATTATAATGT
CGATTATATAATAATCTGGAATAGATTATAATTCCCTTGAGGGTCCCCGA
GAAACCAGAATGCATTGCATTTATCTAAACGCGATATCGTCTATTACTCT
GGTACATCTTTTTGTATTTTTCGTGTTGAGGACGGCAGCCTTGAGAAATG
AGTACCATTTAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTTTTCAA
ATTCGCCGTAATTAGATTATACATTATATCTGGAAAAAGAACTTGATACA
GTTTTTGGGTCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCGTGATA
AAAAACTTATTTGGAACAATAATTTCTTCATAGTACAGTTAAACATTTTG
TATGACTTCAATTTTCAATTCTTTTACTGGACATAGATATGCATTGCAAA
AACAAGTCAGGCTCGGATACAGAGGGAGGCTATAACCAATGGAGGAGAGT
GCACTTTATCATCGTATTACCTTATATGGAAACTAATTACTCTCCACGAA
TAAGATAGCCTACCTCCTGTATCCGACACTGNATGACTTCAATTTTCAAT
TCCTTTACTGGACATAGATATGCATTGCAAAAACAAGTCTTTTTTCAGTT
GATTTTAAATTTATACGATTTGATACATAACATATTATTCTATATGATAC
GGTAGTCGTATTGGTCGGAAAGTTTTTGGAATTCCTCACAAAAATTTGAT
AAATTAAAGGTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAATGAAA
ACTGCAATTGCAAACTGGCTGCAATTTGGACGTAGTTATCACACTCCCGA
CAGCTTAAATTTATAATATAAATAAACAAATTTTTAATTAACTGGAATTT
GGATTTCTAAGTTTTAGTACCAGATATGAAATCCAAATGCTCGACTAGAT
TGCAAATCTGTAAGAATTCATGCGACAGATATATTACGACTTTAAATTCG
TGACTTAAAAAAGACATAATTTAAATTAGCACTATTTATTTATTTATTTA
TTGAACATTTGTCAATATTTTGCTTTAATTTATTGTTTTTATAGTAATAA
GTGTCGATTCTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGACCCTC
GTGAGTCCTGGGACGATGACCAATTTACATGTTTTTTTATAAGCATAAAA
AATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000883-exon-sc0000005-1575043694:1379217..1379647 | TCONS_00000883-exon-sc0000005-1575043694:1379217..1379647 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1575043694:1377991..1378130 | TCONS_00000883-exon-sc0000005-1575043694:1377991..1378130 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1575043694:1377278..1377322 | TCONS_00000883-exon-sc0000005-1575043694:1377278..1377322 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1575043694:1376937..1377046 | TCONS_00000883-exon-sc0000005-1575043694:1376937..1377046 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1575043694:1375252..1375543 | TCONS_00000883-exon-sc0000005-1575043694:1375252..1375543 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1575043694:1373445..1373703 | TCONS_00000883-exon-sc0000005-1575043694:1373445..1373703 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1575043694:1369793..1372175 | TCONS_00000883-exon-sc0000005-1575043694:1369793..1372175 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1510915933:1379217..1379647 | TCONS_00000883-exon-sc0000005-1510915933:1379217..1379647 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1510915933:1377991..1378130 | TCONS_00000883-exon-sc0000005-1510915933:1377991..1378130 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1510915933:1377278..1377322 | TCONS_00000883-exon-sc0000005-1510915933:1377278..1377322 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1510915933:1376937..1377046 | TCONS_00000883-exon-sc0000005-1510915933:1376937..1377046 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1510915933:1375252..1375543 | TCONS_00000883-exon-sc0000005-1510915933:1375252..1375543 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1510915933:1373445..1373703 | TCONS_00000883-exon-sc0000005-1510915933:1373445..1373703 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1510915933:1369793..1372175 | TCONS_00000883-exon-sc0000005-1510915933:1369793..1372175 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1491911889:1379217..1379647 | TCONS_00000883-exon-sc0000005-1491911889:1379217..1379647 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1491911889:1377991..1378130 | TCONS_00000883-exon-sc0000005-1491911889:1377991..1378130 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1491911889:1377278..1377322 | TCONS_00000883-exon-sc0000005-1491911889:1377278..1377322 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1491911889:1376937..1377046 | TCONS_00000883-exon-sc0000005-1491911889:1376937..1377046 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1491911889:1375252..1375543 | TCONS_00000883-exon-sc0000005-1491911889:1375252..1375543 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1491911889:1373445..1373703 | TCONS_00000883-exon-sc0000005-1491911889:1373445..1373703 | Clytia hemisphaerica | exon |
TCONS_00000883-exon-sc0000005-1491911889:1369793..1372175 | TCONS_00000883-exon-sc0000005-1491911889:1369793..1372175 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000005 | supercontig | sc0000005:1369793..1379647 - |
Blast
BLAST of TCONS_00000883 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5) HSP 1 Score: 207.608 bits (527), Expect = 6.780e-57 Identity = 144/498 (28.92%), Postives = 245/498 (49.20%), Query Frame = 2
Query: 449 EGEQRLLKYL-KNFSVNSRPVNISSTAVYVNVTMEIVRLDAVSEKGQSVRMKLHINYLWRNPYLVWNPLNYKGVSEVILPEGEIWIPPIRLFNEASKTQGEYNEDNHARTVLLTNDGNCSLTYAQFFKSTCEIDVSDFPFDQQYCDMTFGSWSMDERLLQLRAVKEEAISEQLYKENGEWHLTEATLKTHDVRYPIHRHKHSTIKLSILIKRKYIFFIMNLVVPCALIACMIFLVFVLPAKSGERISLGITVMLSMAIFQELSSEKLPSSSDNYPLLGVYYTTSMFEIGIALVMNCFILNVYYRNYE---MQPWMRRLLFDKLARLVRIDIP-----HTRTQHYIDRMSTG--QFRELNPXXXXXXXXXXXXXXXIDGESAL-----GNGNGEMSYFPKSTLH-REDTQTIQRKTKKFSVNQNGSSSDLTYTKSNLSAKISLSLSSDPSTRIEERKLLGEDWKTAARILDR-CMLAIAISVGVISALTIFMQAARFRE 1888
E +++L K L KN++ RPV S + V ++ ++++ V EK Q + + + W + YL WN Y GV V P+G+IW P I L+N A + ++ H VL+ + G+C FKS+C IDV FPFD Q+C + FGSWS L L+ ++E IS Y NGEW L K + Y + + + ++ ++R+ +++ +NL++PC LI+ + LVF+LPA SGE+ISLGITV+LS+ +F L +E +P++SD+ PL+ Y+ ++M +G+++V+ +L ++ + + M W R +L + A +R+ P QH R S + + P + N +DG + G G M+ P H Q + + + ++ Y + + +E + + +WK AA ++DR C++A ++ +I + I M A F E
Sbjct: 24 EFQRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADE---RFDATFHT-NVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQ-MQEADISG--YIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHKQRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEHLLHGGQPPEGDPDLAKILE-----EVRYIANRFRCQ-------------DESEAVCSEWKFAACVVDRLCLMAFSV-FTIICTIGILMSAPNFVE 495
The following BLAST results are available for this feature:
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