TCONS_00000883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000883
Unique NameTCONS_00000883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000883 ID=TCONS_00000883|Name=TCONS_00000883|organism=Clytia hemisphaerica|type=transcript|length=3660bp
TCCTTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATT
TATAGAACAgataagaaatttttttaatagaaagTTAAAAGAGGAACtga
aaaggaaatcaaaagGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAG
CAATTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAA
GACTTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATT
TTTACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTA
GTAATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGG
TATTGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTAT
GATAATAACCCATATCCTGGCTTCAATCTGGccTATGAAAGTTTGGACGA
AGGTGAACAGAGGCTTTTGAAATATCTGAAGAATTTTAGCGTGAACTCGA
GGCCAGTCAATATCTCATCAACAGCTGTATACGTTAATGTTACCATGGAA
ATTGTTCGACTCGATGCCGTGAGTGAAAAGGGACAGTCTGTTCGGATGAA
ATTACATATTAATTATctttGGAGGAACCCATATTTAGTATGGAATCCGC
TTAACTATAAAGGTGTTTCCGAAGTCATTTTACCCGAAGGTGAAATCTGG
ATACCGCCCATACGCCTCTTCAATGAAGCGAGCAAAACACAAGGTGAATA
CAATGAGGACAATCACGCGCGGACCGTGCTTCTAACGAATGATGGCAACT
GTTCACTAACCTATGCCCAGTTCTTCAAATCCACATGCGAAATTGATGTC
AGTGATTTTCCATTTGACCAGCAATATTGCGATATGACGTTTGGTAGTTG
GAGTATGGATGAACGGTTGCTACAACTGAGAGCTGTCAAGGAAGAAGCTA
TATCTGAGCAATTGTACAAGGAAAATGGTGAATGGCATTTAACTGAAGCC
ACATTGAAGACCCATGATGTCAGATATCCGATTCACCGTCACAAACACAG
CACCATCAAACTCTCCATACTCATAAAGCGAAAGTACATCTTTTTCATCA
TGAATTTGGTGGTACCATGTGCTCTCATTGCATGCATGATTTTCTTGGTG
TTTGTACTACCAGCCAAATCAGGAGAAAGAATCTCTCTTGGTATTACTGT
CATGTTATCTATGGCTATCTTTCAAGAATTGTCGTCAGAGAAATTGCCAA
GTAGTTCTGATAACTATCCGTTACTTGgtgtTTATTACACGACTTCAATG
TTTGAAATTGGTATTGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTA
CTATCGCAACTATGAAATGCAGCCGTGGATGCGTCGATTGTTATTCGATA
AACTCGCTCGACTCGTTCGAATCGATATCCCACATACTCGAACGCAGCAT
TACATTGATCGAATGTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGC
TGAAACCACCCTCAATAATACGGCGCACAATGCTCACAATATTGACGGTG
AATCGGCACTTGGTAACGGGAACGGAGAAATGTcatattttccaaaatcg
acGCTCCATCGGGAAGACACACAGACTATTCAACGGAAAACCAAGAAGTT
TTCTGTCAACCAAAACGGCAGCAGTAGCGATTTGACGTACACCAAATCGA
ATTTGTCGGCAAAAATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGT
ATCGAAGAGCGAAAACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAAT
TCTAGATCGCTGTATGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAG
CACTTACCATTTTTATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCT
TGAGAATGCTCTCACTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGC
CATCTGTTGTTGCTATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGG
AGAAAGAAAGATGGTAGCACCATTACGTATTGCTAAGGTTGGTAACCCTT
GGTTACAGGAGACCTCGTTTCATGGGTTGTATAAATGACACAGATACAAT
ATCTATAAAAGCGAAAATTTGTTTCTACCGCAAAATAAAATGACTGAGTT
GAAATGGTTTAGATAATGAGCTTATTAAACAAACAAAGCTAACTTATTAT
TAATAATGCTTAGCTGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCA
CTTTCAAATCAAGGCCGCTTTTTACATTACGTGCTTGATGCAAAAACATA
AAGAATGGCTTTGGCGAAACAATCTTGGCCCAAACATACAATCAAAGTAA
AAGCGTCTCTTTGCNaataattaacataatatatgcatggatcgtgcatc
gtgcatcgtgaatcgttggatcgcgcatcgtaaatagacgatatcgcgtt
tagataaatgcaatgcattctggtttctcggggactctcaaaggaattat
aatgtcGATTATATAATAATCtggaatagattataattcccttgagggtc
cccgagaaaccagaatgcattgcatttatctaaacgcgatatcgtctatt
actcTGGTAcatctttttgtatttttcgtGTTGAGGACGGCAGCCTTGAG
AAATGAGTACCATTTAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTT
TTCAAATTCGCCGTAATTAGATTATACATTATATCTGGAAAAAGAACTTG
ATACAGTTTTTGGGTCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCG
TGATAAAAAACTTATTTGGAACAATAATTTCTTCATAGTACAGTTAAACA
TTTTGTAtgacttcaattttcaattcttttactGGACATAGATATGCATT
GCAAAAACAAgtcaggctcggatacagagggaggctataaccaatggagg
agagtgcactttatcatcgtattaccttatatggaaactaattactctcc
acgaataagatagcctacctcctgtatccgacacTGNAtgacttcaattt
tcaattcCTTTACTGGACATAGATATGCATTGCAAAAACAAGTCTTTTTT
CAGTTGATTTTAAATTTATACGATTTGATACATAACATATTATTCTATAT
GATACGGTAGTCGTATTGGTCGGAAAGTTTTTGGAATTCCTcacaaaaat
ttgataaattaaaGGTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAA
TGAAAACTGCAATTGCAAACTGGCTGCAATTTGGACGTAGTTATCACACT
CCCGACAGCTTAAATTTATAatataaataaacaaatttttaattaactGG
AATTTGGATTTCTAAGTTTTAGTACCAGATATGAAATCCAAATGCTCGAC
TAGATTGCAAATCTGTAAGAATTCATGCGACAGATATATTACGACTTTAA
ATTCGTGACTTAAAAAAGACATAATTTAAATTAGcactatttatttattt
atttattgaacatttgtcaatattttgctttaatttattgtttttatagt
AATAAGTGTCGATTCTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGA
CCCTCGTGAGTCCTGGGACGATGACcaatttacatgtttttttataagca
taaaaaattc
Run BLAST on NCBI

transcript from alignment at sc0000005:1369793..1379647-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000883 ID=TCONS_00000883|Name=TCONS_00000883|organism=Clytia hemisphaerica|type=transcript|length=9855bp|location=Sequence derived from alignment at sc0000005:1369793..1379647- (Clytia hemisphaerica)
TCCTTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATT TATAGAACAGATAAGAAATTTTTTTAATAGAAAGTTAAAAGAGGAACTGA AAAGGAAATCAAAAGGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAG CAATTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAA GACTTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATT TTTACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTA GTAATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGG TATTGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTAT GATAATAACCCATATCCTGGCTTCAATCTGGGTATGTTTGGCAATCGTGG ATATTATTTTAATCTAGGTCCGTTGTAGTCATTCATTGCTTCGTTCATTT TTTAACCTCGTTGCCTCTCTCAAACTGTTTCATATATATACCAGCCAGTC TGTTTACCATAAGTGTTAAATCATCTGGCTTTTTCATATGGAAACCATAT CAGTATGATTTAAACTGAGTTTGTTTGTGGGTGGTTTCCACCTGGTAGCA AGAAAAGTGCACTCTAATGAGAGCTGGAATATCCGATTCTTTGCTTACTT TCGGCTAGTACGATTTTTTGAATCTGTCGGTAAATATTACCTTCAATCAA ACTTAATTGAACAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACAC CTTTTCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTTGTCCG TTAATCACCCTAAAACCGTCCCAGTCTTTNTCCGATTCTTTGCTTACTTT CGGCTAGTACGATTTTTTGAATCTGTCGGTAAATGTTACCTTCAATCAAA CTTAAGTGAATAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACACC TTTTCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTGTCCGCT TTACCACCCTAAAACCGTTCCAGTCTTTTTTTTGCACCTATAGGCAATAG AAAAAAGTCTAAAAAAGCATTAGACTAGCAAACTAGTCTGTTAATTAATC ATATCAGAGGGGGGGACATAAAGGCGGCGGGCGTTTGCTAGAATAGGAGC TGCGTAGGAGAGCGAGCAAAAGTTAGTGAGAGGCTGCTGATTAATAGGCA CGTACCTGACCGCGCGACTACGGTCGAAAAGGTGTATCAAACTTATGTGT CCTTTCCCATCCGTCATCTTTATAGATTTGATATTTTATAAAGATGATCA TTTCTCCCTATATTGTTGTCACAAATCGAACAGTTTGGTGCATCCAGACT TTCAAGCTCTTTCTCAGCCAAAACCATAAGATTTAACATTAAATTATATC GTTGTCGATTTGATCATAGACTTCACAGCCGTGATTTATTCAAACCCCTG TTATTTTCATTTTTTAGCCTATGAAAGTTTGGACGAAGGTGAACAGAGGC TTTTGAAATATCTGAAGAATTTTAGCGTGAACTCGAGGCCAGTCAATATC TCATCAACAGCTGTATACGTTAATGTTACCATGGAAATTGTTCGACTCGA TGCCGTGGTAGGTTTTACTCATATAGCCCGGTTTTTTTATTAGTTATCGG GTGTGTAAAATCCTGCTTTGGGCGAGGTTTTATCGATTTGGAAAGGAGCG GAAAATGACATTCGGTCTCCACATGACGTTTTTTCGGTCAATGAAATTGC AAGTAACTTGACTGTCGGATAAGCTTCATATTTTCTGCAAGGCTGACGTA TAACCGGATAAGATTTACATATTTTCTCTAAAGTCTACTTATAGTGTAAA AGCTTTTACCCCCAACTAAGAGGTCTTAATAAACATTCGGTTGTCTGGTG ATTGTATATTGATGGTTGTCTATAGTTAGGGACTGTACACCCTGGTAGAG GAGCAGATTATTTTCGTCTTTTTTAAATCACTTATTGGTTTCCTTACGAC TTTATTAAAAGCAAAGACTATTCGATTCTTAGTTTCCATCTGCTTTGACT ACCCTTACTAGTAATATAGATATTGGGTGTAACAATATGGTCGAATATAT TCGTATACCGGCGCCGTCTCTAGTTTAAGAATCAGTTCTTTATCTCGTCT AGATTTTTATTTCTAAAGATCCTCATCTTATTGTCCCCCATATGAACCCT TCAAATTATTTCATTTTCTTTTCAAATATTCGTAGATTATTTTATCTTAG GTTTTCTTCCTTTATTTTCTTATAGAGTGAAAAGGGACAGTCTGTTCGGA TGAAATTACATATTAATTATGTAAGTAATGAAACATTTTGTGTCTAACTT TTTTATCCCTAAACTAACCCTCCTTATCTGATCTCTAAGACTGAGAGTAC ACTATCCAGTTTTATCATCTCTACCATTGTTGCCGGCACCATGAAGTCAT ATAGGGCCAGATAGGCAAACTTTAAGCTTTCCCAGTAGAGTAAAAACAAA AGATTGTGCCCTTTTTGTATCGGTTACCGGTAATCTTTTTCTTATTTTCA GCTTTGGAGGAACCCATATTTAGTATGGAATCCGCTTAACTATAAAGGTG TTTCCGAAGTCATTTTACCCGAAGGTGAAATCTGGATACCGCCCATACGC CTCTTCAATGAGTAAGCACATTTTTCATCACCCTAAAACGCCCTGAAATA TTAAAAATCGAAATTGAGAATGAACTTTATTTGGTAGTCCAATTCAGTTA AATTGCGCCCCTGTTGCCAACTGTCTTTTTTTCCCCTCTTTGTAATTATT TTCCCTGAAAATGTTCCTGGAAGCTCAACTTACATCATTTTAGGGGCCTC GAATTCATCCAAGTTTTTTTTCTGTAGGATTTCCTACAAAAAACTAAAAG TCCCAAGACATTTTGACGTTCAACAAACAGCCGCTTTCAACTTTATCTAC CGTCTTTATTGTTCGAAATCTCTTGCACTGCGATCCTTTTGCCACCTTTC CTCTTCTTTTCCTCTTTCTTCAAACTCGCCCTTTTTTACCCACAGTTTTA ATTTATTTTAAAGAAAGAAATGTTGTAAATGCCTAATGGGGCATTATTCT TTTTCGCCGTAATGAAACCAACTGCACCTAAGATAGTGATTCCACTGAAG TACAGAAAACTAGTAAAGAATCTCAATTAGTATTATTGCATTAATTTTCA AAAGATTAACTTTTGTGTTTTTGCGAATTTCGGCGAAATTGCCGACTCAG GGAATTAAATCCACGCATTCTGTAACTCTTTTTTTTCGAGGGAAAATAAC ACTCGAAATCTTCTTTACGGAAAATTGGGATCTTTTTTAGCTGATTTTTA GTCCAGAAATTTTAGGCATTACTAACGGGCAAAATAATCTTTCTCGTTAA AATCATCAAGACAATCCCTAAAAATGATGCTGAAAAATATTTCTCTTTGA ATTTCCTGACTGACTTAGAGAAGTCTCTAAATACGGGAATATTGCTTTCT TTTAAAAAGAAAAACTGTTTTTATAATGACTCTCTTGGTTAGGGGTTAGT TCCAAGAATCTTTCTTAGCTTTTATCCAACAAGACTAGAAAAGAAAAAAT AATATTTAAACAGCGGTTTTGATCTGAATATTCTTTCCCAAAAAATTTGT TCTATATTTAGGGTACTATTAGGCAGGTGCCTCAAAAGAAATATGTAGAT GTTAATTTTTTATTCTCGCCCCCTCTTTTTCATATCATTTCTTCCACATT TACTTTTCACTTAAAAATATATTTGGAAAAAGTCATATCAGTACGAAAAG ATTAATTTTATACATTTAGAATGCGTACACTTTACTTTCCGAAAAAAAAA CCCATGGGGCCTAAAAATAGAACAAAAGATACAATGCTAGTAAAACACCC AAAAGCCTGGAGCTATCCTATTATGTAGATTTTCACATCCTCGAATTAAA AAACACTTTCAAAATATTATAAACCTTTTTTACCCTGGTGATTTTTAGAA AACTAAAACTTTGTACCTTTCCTATCTTCCAAGCTTTTCAATTCTTTCAT GCAGAGCGAGCAAAACACAAGGTGAATACAATGAGGACAATCACGCGCGG ACCGTGCTTCTAACGAATGATGGCAACTGTTCACTAACCTATGCCCAGTT CTTCAAATCCACATGCGAAATTGATGTCAGTGATTTTCCATTTGACCAGC AATATTGCGATATGACGTTTGGTAGTTGGAGTATGGATGAACGGTTGCTA CAACTGAGAGCTGTCAAGGAAGAAGCTATATCTGAGCAATTGTACAAGGA AAATGGTGAATGGCATTTAACTGAAGCCACATTGAAGACCCATGATGTAC GTTTTCCTTGATCATATTTTTAGTTTTAGTTGAATTTCGGTTTCTGGAAA GAGTACCACTTCCAGACTAGAATCCAGTTGTATTCTTAGAATTAAGAGTA GATGTACAATCAAATTGTAAGACAAAGTAGAATACAAGCTTCACCCCCTC CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNGTCCCCCCCGTTTATTGAAATTTCAAAAA TTTTCCAACCCCCCCGTTTATTCCAACCCCCCGTTTATTTGGCACCTAAG AGTAAGTCCATGATTGTATAAACGTCATCGATCAAAGGTGTAACCTTTTG TTTTGGTGCTTTATAAATTTTTACGATTAAATCTTAAACCTGCTAGCCTA GAAGAGGACTAGTAAGTACTCTTAGAATGAAAATAAGAATTGTATTCTGA GGGAATTCTTAGTTTCAATTACTATCAACCAGACAGATCTTCCTCGATTT TAATAAATCATAGTAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTT AACAAAAGAATTTCTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTC TTTTGTTTAAAGATAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATT CAATGGGATTGGGGAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTA TTTGATTATTTTCAGTGGGGACAAAAATTGGACGATGATTTTCCACCGGG GACGATATTTTGGCAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTC AAATCAAGGTAGTTTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGA TATCCGATTCACCGTCACAAACACAGCACCATCAAACTCTCCATACTCAT AAAGCGAAAGTACATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTC TCATTGCATGCATGATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGA GAAAGAATCTCTCTTGGTATTACTGTCATGTTATCTATGGCTATCTTTCA AGAATTGTCGTCAGAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTAC TTGGTATGTATTACTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGA TAGATTTTCAATTTTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTT CTAACAATTTTTTTAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTT TTAAAAGCGTATGAGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAA TCTTCACTCTTAATTAAAGAGTATGTCAGACATACAAGAATCACACATGG CAATAACCTTTCTGTTATCAAAATTCATTACATNTTCTGAGGGAATTCTT AGTTTCAATTACTATCAACCAGACAGATCTTCCTCGATTTTAATAAATCA TAGTAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTTAACAAAAGAA TTTCTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTCTTTTGTTTAA AGATAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATTCAATGGGATT GGGGAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTATTTGATTATT TTCAGTGGGGACAAAAATTGGACGATGATTTTCCACCGGGGACGATATTT TGGCAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTCAAATCAAGGT AGTTTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGATATCCGATTC ACCGTCACAAACACAGCACCATCAAACTCTCCATACTCATAAAGCGAAAG TACATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTCTCATTGCATG CATGATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGAGAAAGAATCT CTCTTGGTATTACTGTCATGTTATCTATGGCTATCTTTCAAGAATTGTCG TCAGAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTACTTGGTATGTA TTACTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGATAGATTTTCA ATTTTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTTCTAACAATTT TTTTAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTTTTAAAAGCGT ATGAGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAATCTTCACTCT TAATTAAAGAGTATGTCAGACATACAAGAATCACACATGGCAATAACCTT TCTGTTATCAAAATTCATTACATTATGAAATTCCTGATCGAACTTGATCC ACATATTTCTTTTTATTTTCAGGTGTTTATTACACGACTTCAATGTTTGA AATTGGTATTGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTACTATC GCAACTATGAAATGCAGCCGTGGATGCGTCGATTGTTATTCGATAAACTC GCTCGACTCGTTCGAATCGATATCCCACATACTCGAACGCAGCATTACAT TGATCGAATGTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGCTGAAA CCACCCTCAATAATACGGCGCACAATGCTCACAATATTGACGGTGAATCG GCACTTGGTAACGGGAACGGAGAAATGTCATATTTTCCAAAATCGACGCT CCATCGGGAAGACACACAGACTATTCAACGGAAAACCAAGAAGTTTTCTG TCAACCAAAACGGCAGCAGTAGCGATTTGACGTACACCAAATCGAATTTG TCGGCAAAAATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGTATCGA AGAGCGAAAACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAATTCTAG ATCGCTGTATGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAGCACTT ACCATTTTTATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCTTGAGA ATGCTCTCACTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGCCATCT GTTGTTGCTATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGGAGAAA GAAAGATGGTAGCACCATTACGTATTGCTAAGGTTGGTAACCCTTGGTTA CAGGAGACCTCGTTTCATGGGTTGTATAAATGACACAGATACAATATCTA TAAAAGCGAAAATTTGTTTCTACCGCAAAATAAAATGACTGAGTTGAAAT GGTTTAGATAATGAGCTTATTAAACAAACAAAGCTAACTTATTATTAATA ATGCTTAGCTGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCACTTTC AAATCAAGGCCGCTTTTTACATTACGTGCTTGATGCAAAAACATAAAGAA TGGCTTTGGCGAAACAATCTTGGCCCAAACATACAATCAAAGTAAAAGCG TCTCTTTGCNAATAATTAACATAATATATGCATGGATCGTGCATCGTGCA TCGTGAATCGTTGGATCGCGCATCGTAAATAGACGATATCGCGTTTAGAT AAATGCAATGCATTCTGGTTTCTCGGGGACTCTCAAAGGAATTATAATGT CGATTATATAATAATCTGGAATAGATTATAATTCCCTTGAGGGTCCCCGA GAAACCAGAATGCATTGCATTTATCTAAACGCGATATCGTCTATTACTCT GGTACATCTTTTTGTATTTTTCGTGTTGAGGACGGCAGCCTTGAGAAATG AGTACCATTTAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTTTTCAA ATTCGCCGTAATTAGATTATACATTATATCTGGAAAAAGAACTTGATACA GTTTTTGGGTCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCGTGATA AAAAACTTATTTGGAACAATAATTTCTTCATAGTACAGTTAAACATTTTG TATGACTTCAATTTTCAATTCTTTTACTGGACATAGATATGCATTGCAAA AACAAGTCAGGCTCGGATACAGAGGGAGGCTATAACCAATGGAGGAGAGT GCACTTTATCATCGTATTACCTTATATGGAAACTAATTACTCTCCACGAA TAAGATAGCCTACCTCCTGTATCCGACACTGNATGACTTCAATTTTCAAT TCCTTTACTGGACATAGATATGCATTGCAAAAACAAGTCTTTTTTCAGTT GATTTTAAATTTATACGATTTGATACATAACATATTATTCTATATGATAC GGTAGTCGTATTGGTCGGAAAGTTTTTGGAATTCCTCACAAAAATTTGAT AAATTAAAGGTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAATGAAA ACTGCAATTGCAAACTGGCTGCAATTTGGACGTAGTTATCACACTCCCGA CAGCTTAAATTTATAATATAAATAAACAAATTTTTAATTAACTGGAATTT GGATTTCTAAGTTTTAGTACCAGATATGAAATCCAAATGCTCGACTAGAT TGCAAATCTGTAAGAATTCATGCGACAGATATATTACGACTTTAAATTCG TGACTTAAAAAAGACATAATTTAAATTAGCACTATTTATTTATTTATTTA TTGAACATTTGTCAATATTTTGCTTTAATTTATTGTTTTTATAGTAATAA GTGTCGATTCTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGACCCTC GTGAGTCCTGGGACGATGACCAATTTACATGTTTTTTTATAAGCATAAAA AATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000521XLOC_000521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000883-exon-sc0000005-1575043694:1379217..1379647TCONS_00000883-exon-sc0000005-1575043694:1379217..1379647Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1575043694:1377991..1378130TCONS_00000883-exon-sc0000005-1575043694:1377991..1378130Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1575043694:1377278..1377322TCONS_00000883-exon-sc0000005-1575043694:1377278..1377322Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1575043694:1376937..1377046TCONS_00000883-exon-sc0000005-1575043694:1376937..1377046Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1575043694:1375252..1375543TCONS_00000883-exon-sc0000005-1575043694:1375252..1375543Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1575043694:1373445..1373703TCONS_00000883-exon-sc0000005-1575043694:1373445..1373703Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1575043694:1369793..1372175TCONS_00000883-exon-sc0000005-1575043694:1369793..1372175Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1510915933:1379217..1379647TCONS_00000883-exon-sc0000005-1510915933:1379217..1379647Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1510915933:1377991..1378130TCONS_00000883-exon-sc0000005-1510915933:1377991..1378130Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1510915933:1377278..1377322TCONS_00000883-exon-sc0000005-1510915933:1377278..1377322Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1510915933:1376937..1377046TCONS_00000883-exon-sc0000005-1510915933:1376937..1377046Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1510915933:1375252..1375543TCONS_00000883-exon-sc0000005-1510915933:1375252..1375543Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1510915933:1373445..1373703TCONS_00000883-exon-sc0000005-1510915933:1373445..1373703Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1510915933:1369793..1372175TCONS_00000883-exon-sc0000005-1510915933:1369793..1372175Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1491911889:1379217..1379647TCONS_00000883-exon-sc0000005-1491911889:1379217..1379647Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1491911889:1377991..1378130TCONS_00000883-exon-sc0000005-1491911889:1377991..1378130Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1491911889:1377278..1377322TCONS_00000883-exon-sc0000005-1491911889:1377278..1377322Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1491911889:1376937..1377046TCONS_00000883-exon-sc0000005-1491911889:1376937..1377046Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1491911889:1375252..1375543TCONS_00000883-exon-sc0000005-1491911889:1375252..1375543Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1491911889:1373445..1373703TCONS_00000883-exon-sc0000005-1491911889:1373445..1373703Clytia hemisphaericaexon
TCONS_00000883-exon-sc0000005-1491911889:1369793..1372175TCONS_00000883-exon-sc0000005-1491911889:1369793..1372175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1369793..1379647 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 1.6667e-06 0 0 0 0 0.75726 0 0.984597 0.000948704 1.36319e-06 5.81219e-08 0 0.705817 0 0.0372673 0 0.227047 0.749235 0.015246 0.0013137 0.996144 0 0 0 0.197397 0 0 0 0
Blast
BLAST of TCONS_00000883 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 207.608 bits (527), Expect = 6.780e-57
Identity = 144/498 (28.92%), Postives = 245/498 (49.20%), Query Frame = 2
Query:  449 EGEQRLLKYL-KNFSVNSRPVNISSTAVYVNVTMEIVRLDAVSEKGQSVRMKLHINYLWRNPYLVWNPLNYKGVSEVILPEGEIWIPPIRLFNEASKTQGEYNEDNHARTVLLTNDGNCSLTYAQFFKSTCEIDVSDFPFDQQYCDMTFGSWSMDERLLQLRAVKEEAISEQLYKENGEWHLTEATLKTHDVRYPIHRHKHSTIKLSILIKRKYIFFIMNLVVPCALIACMIFLVFVLPAKSGERISLGITVMLSMAIFQELSSEKLPSSSDNYPLLGVYYTTSMFEIGIALVMNCFILNVYYRNYE---MQPWMRRLLFDKLARLVRIDIP-----HTRTQHYIDRMSTG--QFRELNPXXXXXXXXXXXXXXXIDGESAL-----GNGNGEMSYFPKSTLH-REDTQTIQRKTKKFSVNQNGSSSDLTYTKSNLSAKISLSLSSDPSTRIEERKLLGEDWKTAARILDR-CMLAIAISVGVISALTIFMQAARFRE 1888
            E +++L K L KN++   RPV   S  + V  ++ ++++  V EK Q +   + +   W + YL WN   Y GV  V  P+G+IW P I L+N A +    ++   H   VL+ + G+C       FKS+C IDV  FPFD Q+C + FGSWS     L L+ ++E  IS   Y  NGEW L     K  +  Y   +  +  +  ++ ++R+ +++ +NL++PC LI+ +  LVF+LPA SGE+ISLGITV+LS+ +F  L +E +P++SD+ PL+  Y+ ++M  +G+++V+   +L  ++ + +   M  W R +L +  A  +R+  P         QH   R S    +   + P   +  N        +DG   +     G   G M+  P    H     Q  +       + +     ++ Y  +    +             +E + +  +WK AA ++DR C++A ++   +I  + I M A  F E
Sbjct:   24 EFQRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADE---RFDATFHT-NVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQ-MQEADISG--YIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHKQRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEHLLHGGQPPEGDPDLAKILE-----EVRYIANRFRCQ-------------DESEAVCSEWKFAACVVDRLCLMAFSV-FTIICTIGILMSAPNFVE 495          
The following BLAST results are available for this feature:
BLAST of TCONS_00000883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA76.780e-5728.92Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
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