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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000878 ID=TCONS_00000878|Name=TCONS_00000878|organism=Clytia hemisphaerica|type=transcript|length=1623bp
GAAGAAATGACGATGTTAAAAATCGATGATTTTTTACGTATGGTTGAATC
TGTGCGATGGTTACGCACAAAAGAGAGGTATTCCGATgcaaaaagtattt
taagaagAATGGCACGTTGGAATCATAAAGAACTTGATGAAACAGCTGGC
ATTGAGAGGCCAATCATATCAACAAAACGAACAACACCTTTAGACCTGTT
CCGAAGAAATCTAGTAGTATCTACTCTAGCCCAAGGCTGCTTATGGTTTG
TTAACGGGCTAGTTTACTATGGTTTATCGTTATCAGCTGACGACCTTGGA
GGATCCATGTATCTCAATTTTGTTTATGTCAGTTTAGCTGAAATACCATC
CGCAATATGTGCTGCTGATTTTTCCAATCGTTTTGGCCGCAAAAGAACAA
CGGTTGTTGCGTTGATTTTGGCCGGTGTTTTTTGTATCTCCGTACCGTAT
ATACCGTTAACTGAAGCCGGGAAACCAAGCCGTTTAGCTGTCGGACTTTT
GGGtaaatttttcttgactttgaGTTTTGATATCATTACTATTTGGTCGG
TAGAATTATTTCCAACcgatttgcgttcaaaaggattAAGTTTTGTTTAC
ATGTGTGGCAATGTAGGATCGACCGCCTCACCATGGATCGCCAAAGGATT
AAAAGTGTTTTCAGATGAGGTGCCTTTTATCGTTATGGGTGTCTCCGCCC
TAGTTGGTGGGGCGGTTGGATTACTGCTTGAAGAAACGAATGGGCGGGAT
GCTAAAGATACTTTGAATGAATTTCTTGCTGATGGAGTGGATAATAAGGA
AGGTAAAGAATTCTTACAAAATCATAATGCAAATGTAGAAACTTGAAATG
TGATATGGTGAAATTTGCTCTACATTATACACCCATGTCTCTGTTACCAT
AAAGATTTCATGAAATGTAAGACACTTTTTTCACCCGGcgctatttttga
atttttttcagttgGGAAATAAAAGGTTCCTCCTGCTTTCGAGTCAAGGA
CACAGGGTGTAGACATGGCCATCATACTTGAATATTATCAAACAAATCTT
CAATATGATGGTGACGTAATAATGATCAATGCCGTATATCATCTTGAAGA
AAAGTATCTTAGCTGTCAGAGAGAGTTTTAACTAAAATAAGCCAAGATTC
TAATTATATATTTAaccatttttggaaatttatgcTAAATTACGGCCACA
TGTTAatctcaggcaaattaaggcctgtccagatttttcaaatttaccca
aattttttatcaccgtttccacttgtcatatcatatcacttcatacatcg
aaagaagcgtattggagtgtagatcactggaatggctgtgccataattaa
ttttttcacccaaaaaaagatattaggcaaaaaccaaaaaatgctgacgt
cagcaaacttgtttcttgaataactccagtttggcttatggtaaaaacat
gaaatttggaccaaagttgcacactATTAAAAggaccattttgaaaaaaa
gattttttgaagttttgctgacgacagcactttattgcaagatttcgtat
tttgctgatttctgctgacgtcagcaaaattttgaaaaagaaattatgca
aaaatgttcctattaatgatatg Run BLAST on NCBI transcript from alignment at sc0000005:1331049..1333355- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000878 ID=TCONS_00000878|Name=TCONS_00000878|organism=Clytia hemisphaerica|type=transcript|length=2307bp|location=Sequence derived from alignment at sc0000005:1331049..1333355- (Clytia hemisphaerica)
GAAGAAATGACGATGTTAAAAATCGATGATTTTTTACGTATGGTTGGTGA
GTTTGGTCCCTTTCAATGGATCCTTGAGCTATGGTGTATCTTTTTGTATA
TTGCCCCTGTCTCACAGATTTATATCATGTATTTCACAACTCCCGAACCA
CCAGCCTGGAGATGTGTTAACGGAAGTAGTCTGTGCAATCTTAATGGAAC
ACAACCTAGTGATAATAATTACCGATGTGAAATACCGAGATCCCAATGGG
AATATGTTCAAGGGGAAGGAGTTTCAACAGTAACTGTTGATTACGATTTA
GTCTGTGATTCAAAATGGTTGATTTCAATGACCAGTTCCATTTTCTATTT
CGGAAAACTGTTTGGAACCTTTTGCGCTGGTTGGCTAGCCGATAATTATG
GTCGTAAAACTGTTCTGTACCCATCCAATCTATTGTTATTGTCGGCTTCG
TTATTAACGACTCTTATGCCGAATATATGGTCGTTTTTGGTCTGTCGTTT
TATTGCTGGATTTGCGACCGATGCTACAACCAATCAGGCTCTTCTTTTAC
TTTCGGAATACGTTTCGACAAAATACCGACCAATCGCTACTAATATTTTG
TGGATGGGTTGGATAGGAACTTTATGTCTTATGCCGTTACAAGCGTATTT
TATAAAACAATGGAAAATGCTTTTTGTTGTAGCTGTTGTCCCTTATGTGA
TCGGGTTTTTATCTTACTTTTTTATCCCAGAATCTGTGCGATGGTTACGC
ACAAAAGAGAGGTATTCCGATGCAAAAAGTATTTTAAGAAGAATGGCACG
TTGGAATCATAAAGAACTTGATGAAACAGCTGGCATTGAGAGGCCAATCA
TATCAACAAAACGAACAACACCTTTAGACCTGTTCCGAAGAAATCTAGTA
GTATCTACTCTAGCCCAAGGCTGCTTATGGTTTGTTAACGGGCTAGTTTA
CTATGGTTTATCGTTATCAGCTGACGACCTTGGAGGATCCATGTATCTCA
ATTTTGTTTATGTCAGTTTAGCTGAAATACCATCCGCAATATGTGCTGCT
GATTTTTCCAATCGTTTTGGCCGCAAAAGAACAACGGTTGTTGCGTTGAT
TTTGGCCGGTGTTTTTTGTATCTCCGTACCGTATATACCGTTAACTGAAG
CCGGGAAACCAAGCCGTTTAGCTGTCGGACTTTTGGGTAAATTTTTCTTG
ACTTTGAGTTTTGATATCATTACTATTTGGTCGGTAGAATTATTTCCAAC
CGATTTGCGTTCAAAAGGATTAAGTTTTGTTTACATGTGTGGCAATGTAG
GATCGACCGCCTCACCATGGATCGCCAAAGGATTAAAAGTGTTTTCAGAT
GAGGTGCCTTTTATCGTTATGGGTGTCTCCGCCCTAGTTGGTGGGGCGGT
TGGATTACTGCTTGAAGAAACGAATGGGCGGGATGCTAAAGATACTTTGA
ATGAATTTCTTGCTGATGGAGTGGATAATAAGGAAGGTAAAGAATTCTTA
CAAAATCATAATGCAAATGTAGAAACTTGAAATGTGATATGGTGAAATTT
GCTCTACATTATACACCCATGTCTCTGTTACCATAAAGATTTCATGAAAT
GTAAGACACTTTTTTCACCCGGCGCTATTTTTGAATTTTTTTCAGTTGGG
AAATAAAAGGTTCCTCCTGCTTTCGAGTCAAGGACACAGGGTGTAGACAT
GGCCATCATACTTGAATATTATCAAACAAATCTTCAATATGATGGTGACG
TAATAATGATCAATGCCGTATATCATCTTGAAGAAAAGTATCTTAGCTGT
CAGAGAGAGTTTTAACTAAAATAAGCCAAGATTCTAATTATATATTTAAC
CATTTTTGGAAATTTATGCTAAATTACGGCCACATGTTAATCTCAGGCAA
ATTAAGGCCTGTCCAGATTTTTCAAATTTACCCAAATTTTTTATCACCGT
TTCCACTTGTCATATCATATCACTTCATACATCGAAAGAAGCGTATTGGA
GTGTAGATCACTGGAATGGCTGTGCCATAATTAATTTTTTCACCCAAAAA
AAGATATTAGGCAAAAACCAAAAAATGCTGACGTCAGCAAACTTGTTTCT
TGAATAACTCCAGTTTGGCTTATGGTAAAAACATGAAATTTGGACCAAAG
TTGCACACTATTAAAAGGACCATTTTGAAAAAAAGATTTTTTGAAGTTTT
GCTGACGACAGCACTTTATTGCAAGATTTCGTATTTTGCTGATTTCTGCT
GACGTCAGCAAAATTTTGAAAAAGAAATTATGCAAAAATGTTCCTATTAA
TGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000878-exon-sc0000005-1575043694:1333310..1333355 | TCONS_00000878-exon-sc0000005-1575043694:1333310..1333355 | Clytia hemisphaerica | exon |
| TCONS_00000878-exon-sc0000005-1575043694:1331049..1332625 | TCONS_00000878-exon-sc0000005-1575043694:1331049..1332625 | Clytia hemisphaerica | exon |
| TCONS_00000878-exon-sc0000005-1510915933:1333310..1333355 | TCONS_00000878-exon-sc0000005-1510915933:1333310..1333355 | Clytia hemisphaerica | exon |
| TCONS_00000878-exon-sc0000005-1510915933:1331049..1332625 | TCONS_00000878-exon-sc0000005-1510915933:1331049..1332625 | Clytia hemisphaerica | exon |
| TCONS_00000878-exon-sc0000005-1491911889:1333310..1333355 | TCONS_00000878-exon-sc0000005-1491911889:1333310..1333355 | Clytia hemisphaerica | exon |
| TCONS_00000878-exon-sc0000005-1491911889:1331049..1332625 | TCONS_00000878-exon-sc0000005-1491911889:1331049..1332625 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1331049..1333355 - |
Blast
BLAST of TCONS_00000878 vs. Swiss-Prot (Human)
Match: S22AF (Solute carrier family 22 member 15 OS=Homo sapiens GN=SLC22A15 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.345e-29 Identity = 90/223 (40.36%), Postives = 122/223 (54.71%), Query Frame = 1
Query: 46 ESVRWLRTKERYSDAKSILRRMARWNHKELDETAGIERPIISTKRTTP--LDLFR-RNLVVSTLAQGCLWFVNGLVYYGLSLSADDLGGSMYLNFVYVSLAEIPS-AICAADFSNR-FGRKRTTVVALILAGVFCISVPYIPLTEAGKPSRLAV------GLLGKFFLTLSFDIITIWSVELFPTDLRSKGLSFVYMCGNVGSTASPWIAKGLKVFSDEVPFI 681
ES RWL ++ R S+A+ L +A+ N K L T + P + R T LDLFR R L+ TL +WFV LVYYGL+LSA DLGGS+Y N L EIPS +C + + FGRKRT L L G+ C+ V ++P E AV LLGK ++ +F+I+ I++ EL+PT +R+ GL M VG +P+I LK +PFI
Sbjct: 247 ESPRWLYSQGRLSEAEEALYLIAKRNRK-LKCTFSLTHPANRSCRETGSFLDLFRYRVLLGHTLILMFIWFVCSLVYYGLTLSAGDLGGSIYANLALSGLIEIPSYPLCIYLINQKWFGRKRTLSAFLCLGGLACLIVMFLP--EKKDTGVFAVVNSHSLSLLGKLTISAAFNIVYIYTSELYPTVIRNVGLGTCSMFSRVGGIIAPFIPS-LKYVQWSLPFI 465
The following BLAST results are available for this feature:
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