|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000874 ID=TCONS_00000874|Name=TCONS_00000874|organism=Clytia hemisphaerica|type=transcript|length=2539bp
GCTTTATTCTATAACAGCAATCCAGCTTTTATCAGTCAGTGACGATGTCT
GTTCCATAACAATTGTCTCTTGATTGTTCTCAAATTCTGTATTATCTTTT
CCACTCATCTCATCACCAGACGTTTTCTGATCGCAAAATTGGGCAGATAG
TTTCGTCAAAGAATTTGaatcatgaaaattttcacTCACAAATTCTTCAG
CTTCATTAAATGGCATAACCTTCCCAGAAGTGACAGGACCGCTCTGATTT
TTAATGTTTGTCAAAACACTCCATGTACAAGACCTTTCTTGCTTTAAACC
TTGCAATGAATCTGTCGATTGATTCGGTCCAGTCAACGTTTTAAGTGAAT
CACTACTGTAACTGTGGTTTGTTAAGGAACTATTTACTCGCCATTCTAAA
GTCGATGTTCTGGAAAGTCGTCGAACTTCTGGTGCATTCATAACACTTGC
TAAACGATCACGTTGGAATGCTTCAGTCGTATTCTCTTCAGGGTAAAAAA
GAATCAATTTAATCTTATAACCatacaaaaacaataaaaggACAATATTA
ATAACCAATGTTAACATTGCAACCAAAAAGTCGATTTTCGTTTGATCTCT
TGTACTCAATCTCAAAGGAATGCCGATAGACCCTAATAAAACAGTTGTAA
ACATTGCGAAGAATGTATATTGCGCTTCATTGAATCTGCCAGGTAGCCCA
CGACCTCTGAAAGACTGTACGCCGCATACAATAAGTAGAATTAGGAGATA
ACAAATCTGTACGAAATAATGATCAAGTAGTTTTTCACATCTATGTTGTA
AAGTATAGTTAGTTCTATCTGTAACCGTTTTTATGGAAACTGCATGGAAA
GAAATTGTTATAATGACAATAGAGACATTTACCAGTACGGTTAGAATCAA
GATTCCCATCTCCTTGGTGGTCTGTTGCAATGCTTCTCCTTTGGTGAGTT
TGAATTTAAGATTAAATACAGTCAGAAGATGTGTTACTTTGACCAGCGAA
ATTCCAATTATAATAGTCAGTAGGATCCCTGTTAGATAGACTCGAGCTGT
ACATCTGTATGTTGTTTCAATGTTGCCGACGAATAACAAAGGTGTAAAGG
CTAGTGCCAAGTGAGCTGATATTTGAATTATGGATAATATAATGTTTGAC
GATCTTACAATAGGTGTTTGACTATATTTGTAAAAGACTGTTGAAATTAC
TGCAATAAGGCAGATTGTTGTGCCAGTTGTGACGAATAAAAGGATAGTAC
GCCATTCGCTCCACGTTAGGTAATCAACGGTCAATAATATGCATTTTGTT
TTATCAATGTTGGTAACACTGTTCAGAGGGCAACTAATGCATTTCTCTAA
AccggttttgtttttgaaattgtttcggtcACATGGTACGCAGAACCAAC
AACACGTGTTCGATGAATCGAATAAAGGGTAAAATCCTGGTCGACATTCT
TCTGAACATTTCGAAGACATATTACCAGTAGCTTTCTGTAAAATATTGCT
CTCCAAGTGAATGTCTGGTTTTGAATTGTCTTTTTGAGACCACTGTAAAG
TAAGTTGAAAATCTATTTCAATTTTATAGAGACTCCTTTTGGTGATGTAT
AATTCGTATCTGGCATGATTTGTTTCGCCATTCTCCTTGAACTTAAGGTT
TTCTCCGTTTAGATTGTTAAATGAAACATTATTCAAGTATAATCGATTGA
ATTTTCTATGGTTTATAAGTGGATACGTAATACAATGGTATGGATCAATT
CCCTGTGGGCATGGTATTTGCTTATCCAAGAAGAAACTATTAAAGGCTCT
GGTGAGTGCATGGAGACTTTCGTAGATAGCACCTAACCTGGTTAAATCCA
ATGTCAAACCCATGTCTTTCAATGTACTATTTCTGTCTTTTACTTTCATA
CTTTCAAATAGTTTTCTCAAAAAGGTTTTAGTTTGATCCTGATGAACAGC
TTGGTAAGAAATATTTAGTAGTTGATCCTCGAATTCTTGGTCTTTCCCAT
AATTAAGAACCACCGACAAAAAAATCCCACTCAAATGATTGTCTCTGTAC
ATGTCAGTAACTCCAGAGTCCTCGCTGATAATCCATATAAAATCCTTCAT
TCTATACCTTGCAGCTATGTCAAAGAATTTTTCAACTGTTTCTTTTAAAG
CCCAAATCACGACAACTTTAGACGAATTCTGTTCATTTATCTGTAAAACG
GTATTCTCCATTGTATGTACTTTGTCAACATCGAAAATCAGTTTCATATT
TAAACAAATATTATTTGATTTGAATACATCCTCCAATATGGCAATCCCAG
AACGTCCATACACGTCATCCGATCCTACAGTAAAAATGAAATACACCAAT
GATGCGATAGATCCCTGGCTTTGTTACATATTCACCAGCACTGTTGGAAG
TTAGAATCGACAACATCAATAGAATAGTAAGTGAACATTGATTCATTTTA
TTAAAACAAACATCGAACtcctttttcttaaaaataagaCGTCTTAATTT
CTCTTCATCGAAAATTCATAAACTTATTAGTTAGTGGCT Run BLAST on NCBI transcript from alignment at sc0000005:1234217..1237219- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000874 ID=TCONS_00000874|Name=TCONS_00000874|organism=Clytia hemisphaerica|type=transcript|length=3003bp|location=Sequence derived from alignment at sc0000005:1234217..1237219- (Clytia hemisphaerica)
GCTTTATTCTATAACAGCAATCCAGCTTTTATCAGTCAGTGACGATGTCT
GTTCCATAACAATTGTCTCTTGATTGTTCTCAAATTCTGTATTATCTTTT
CCACTCATCTCATCACCAGACGTTTTCTGATCGCAAAATTGGGCAGATAG
TTTCGTCAAAGAATTTGAATCATGAAAATTTTCACTCACAAATTCTTCAG
CTTCATTAAATGGCATAACCTTCCCAGAAGTGACAGGACCGCTCTGATTT
TTAATGTTTGTCAAAACACTCCATGTACAAGACCTTTCTTGCTTTAAACC
TTGCAATGAATCTGTCGATTGATTCGGTCCAGTCAACGTTTTAAGTGAAT
CACTACTGTAACTGTGGTTTGTTAAGGAACTATTTACTCGCCATTCTAAA
GTCGATGTTCTGGAAAGTCGTCGAACTTCTGGTGCATTCATAACACTTGC
TAAACGATCACGTTGGAATGCTTCAGTCGTATTCTCTTCAGGGTAAAAAA
GAATCAATTTAATCTTATAACCATACAAAAACAATAAAAGGACAATATTA
ATAACCAATGTTAACATTGCAACCAAAAAGTCGATTTTCGTTTGATCTCT
TGTACTCAATCTCAAAGGAATGCCGATAGACCCTAATAAAACAGTTGTAA
ACATTGCGAAGAATGTATATTGCGCTTCATTGAATCTGCCAGGTAGCCCA
CGACCTCTGAAAGACTGTACGCCGCATACAATAAGTAGAATTAGGAGATA
ACAAATCTGTACGAAATAATGATCAAGTAGTTTTTCACATCTATGTTGTA
AAGTATAGTTAGTTCTATCTGTAACCGTTTTTATGGAAACTGCATGGAAA
GAAATTGTTATAATGACAATAGAGACATTTACCAGTACGGTTAGAATCAA
GATTCCCATCTCCTTGGTGGTCTGTTGCAATGCTTCTCCTTTGGTGAGTT
TGAATTTAAGATTAAATACAGTCAGAAGATGTGTTACTTTGACCAGCGAA
ATTCCAATTATAATAGTCAGTAGGATCCCTGTTAGATAGACTCGAGCTGT
ACATCTGTATGTTGTTTCAATGTTGCCGACGAATAACAAAGGTGTAAAGG
CTAGTGCCAAGTGAGCTGATATTTGAATTATGGATAATATAATGTTTGAC
GATCTTACAATAGGTGTTTGACTATATTTGTAAAAGACTGTTGAAATTAC
TGCAATAAGGCAGATTGTTGTGCCAGTTGTGACGAATAAAAGGATAGTAC
GCCATTCGCTCCACGTTAGGTAATCAACGGTCAATAATATGCATTTTGTT
TTATCAATGTTGGTAACACTGTTCAGAGGGCAACTAATGCATTTCTCTAA
ACCGGTTTTGTTTTTGAAATTGTTTCGGTCACATGGTACGCAGAACCAAC
AACACGTGTTCGATGAATCGAATAAAGGGTAAAATCCTGGTCGACATTCT
TCTGAACATTTCGAAGACATATTACCAGTAGCTTTCTGTAAAATATTGCT
CTCCAAGTGAATGTCTGGTTTTGAATTGTCTTTTTGAGACCACTGTAAAG
TAAGTTGAAAATCTATTTCAATTTTATAGAGACTCCTTTTGGTGATGTAT
AATTCGTATCTGGCATGATTTGTTTCGCCATTCTCCTTGAACTTAAGGTT
TTCTCCGTTTAGATTGTTAAATGAAACATTATTCAAGTATAATCGATTGA
ATTTTCTATGGTTTATAAGTGGATACGTAATACAATGGTATGGATCAATT
CCCTGTGGGCATGGTATTTGCTTATCCAAGAAGAAACTATTAAAGGCTCT
GGTGAGTGCATGGAGACTTTCGTAGATAGCACCTAACCTGGTTAAATCCA
ATGTCAAACCCATGTCTTTCAATGTACTATTTCTGTCTTTTACTTTCATA
CTTTCAAATAGTTTTCTCAAAAAGGTTTTAGTTTGATCCTGATGAACAGC
TTGGTAAGAAATATTTAGTAGTTGATCCTCGAATTCTTGGTCTTTCCCAT
AATTAAGAACCACCGACAAAAAAATCCCACTCAAATGATTGTCTCTGTAC
ATGTCAGTAACTCCAGAGTCCTCGCTGATAATCCATATAAAATCCTTCAT
TCTATACCTTGCAGCTATGTCAAAGAATTTTTCAACTGTTTCTTTTAAAG
CCCAAATCACGACAACTTTAGACGAATTCTGTTCATTTATCTGTAAAACG
GTATTCTCCATTGTATGTACTTTGTCAACATCGAAAATCAGTTTCATATT
TAAACAAATATTATTTGATTTGAATACATCCTCCAATATGGCAATCCCAG
AACGTCCATACACGTCATCCGATCCTACAGTAAAAATGTAAGTCCATTCA
AACTCTAGTAAAACATCTTTAATAAACGTGGCTTGTTTAAAGTCATTGGG
TACAGTTCTATAAAAACTCTCTGTTGGAATCAAATCAATGCTGGTAGCTG
CATAGCTCACTACCGTTAGATTCTCATAAGAAAGTAATGAATTCAGAAAC
ACAGCATTTGAAGAAGACCGGGGTCCAATGATACCAAGCGTTTTATACAA
AGCTACATTTTGATCTACACATTGGCACTGATCCGTATCTGTAAACAGCA
CACCATCGGAACCGCCTAATAGTATCTTAACAGCAATTGAAGTCAGTTCT
GGTGAAGGCTGGTTATGTCCACTATCGAAAATTTGATAACCAAAAAAATC
TTCACCCAAATCTTTATTAATCTTGTCGATAGAGTATTTAAAATACTCCG
ACCATATGACTGCATCTGTGTTAATTCTGTCCTCAGTTTTTGATCTTATA
GGAAATACACCAATGATGCGATAGATCCCTGGCTTTGTTACATATTCACC
AGCACTGTTGGAAGTTAGAATCGACAACATCAATAGAATAGTAAGTGAAC
ATTGATTCATTTTATTAAAACAAACATCGAACTCCTTTTTCTTAAAAATA
AGACGTCTTAATTTCTCTTCATCGAAAATTCATAAACTTATTAGTTAGTG
GCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000874-exon-sc0000005-1575043694:1234883..1237219 | TCONS_00000874-exon-sc0000005-1575043694:1234883..1237219 | Clytia hemisphaerica | exon |
| TCONS_00000874-exon-sc0000005-1575043694:1234217..1234418 | TCONS_00000874-exon-sc0000005-1575043694:1234217..1234418 | Clytia hemisphaerica | exon |
| TCONS_00000874-exon-sc0000005-1510915933:1234883..1237219 | TCONS_00000874-exon-sc0000005-1510915933:1234883..1237219 | Clytia hemisphaerica | exon |
| TCONS_00000874-exon-sc0000005-1510915933:1234217..1234418 | TCONS_00000874-exon-sc0000005-1510915933:1234217..1234418 | Clytia hemisphaerica | exon |
| TCONS_00000874-exon-sc0000005-1491911889:1234883..1237219 | TCONS_00000874-exon-sc0000005-1491911889:1234883..1237219 | Clytia hemisphaerica | exon |
| TCONS_00000874-exon-sc0000005-1491911889:1234217..1234418 | TCONS_00000874-exon-sc0000005-1491911889:1234217..1234418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1234217..1237219 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00000874 vs. Swiss-Prot (Human)
Match: GRM7 (Metabotropic glutamate receptor 7 OS=Homo sapiens GN=GRM7 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.680e-29 Identity = 151/689 (21.92%), Postives = 285/689 (41.36%), Query Frame = -2
Query: 400 FIFTVGSDDVYGRSGIAILEDVFK-SNNICLNMKLIFDV---DKVHTMENTVLQINEQNSSKVVVIWALKETVEKFFDIAARY-RMKDFIWIISEDSG--VTDMYRDNHLSGIFLSVVLN---------YGKDQEFEDQLLNISYQAVHQDQTKTFLRKLFESMKVKDRNSTLKD-MGLTLDLTRLG-------AIYESLHALTRAFNSFFLDKQIPCPQGIDPYHCITYPLINHRKFNRL--YLNNVSFNNLNGENLKFKENGETNHARYELYITKRSLYKIEIDFQLTLQWSQKDNSKPDIHLESNILQKATGNM---SSKCSEECRPGFYPLFDSSNTCCWFCVPCDRNNFKNKTGLEKCISCPLNSVTNIDKTKCILLTVDYLTW-SEWRTILLFVTTGTTICLIAVISTVFYKYSQTPIVRXXXXXXXXXXXXXXXXXAFTPLLFVGNIETTYRCTARVYXXXXXXXXXXXISLVKVTHLLTVFNLKFKLTKGEALQQTTKEMGILILTVLVNVSIVIITISFHAVSIKTVTDRTNYTLQH--------RCEKLLDHYFVQICYLLILLIVCGVQSFRGRGLPGRFNEAQYTFFAMFTTVLLGSIGIPLRLST-RDQTKIDFLVAMLTLVINI---VLLLFLYGYKIKLILFYPEENTTEAFQRDRLASVMNAPEVRRLSRTST 2340
++ T+ S+ YG G+ + K + +C+ + D+ + + Q+ + +S+ VVI+A E +++ A R ++ F+W+ S+ G + +++ ++ +++ Y + E+ N+ + ++ L + DR T ++ +G + + G A+Y HAL D + CP+ + +L Y+ NV+FN G + F +NG+ RY+++ ++ ++L QW+ ++ L +Q G +S C+ C+PG CCW C PCD ++ + C CP + N ++T C + + L W S W I +F+ I I V++T F +Y+ TPIVR+S LS + ++ L + + C+ R G+ + I L K + +F K L T ++ I + L++V ++ + I F + D + + +C+ + Y ++L++ C V + + RG+P FNEA+ F M+TT ++ IP+ T + K+ LT+ +N+ V L LY K+ +I+F+PE N + +R A V A RLS +
Sbjct: 220 YVSTLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPE------------MEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIF-QYQTTNTSNPGYRLIGQWTD------ELQLNIEDMQWGKGVREIPASVCTLPCKPGQRKKTQKGTPCCWTCEPCD--GYQYQFDEMTCQHCPYDQRPNENRTGCQDIPIIKLEWHSPWAVIPVFLAMLGIIATIFVMAT-FIRYNDTPIVRASGRELSYVLLTGIFLCYIITFLMIAKPDVAV-CSFRRVFLGLGMCISYAALLTKTNRIYRIFEQGKKSVTAPRLISPTSQLAIT--SSLISVQLLGVFIWFGVDPPNIIIDYDEHKTMNPEQARGVLKCDITDLQIICSLGYSILLMVTCTVYAIKTRGVPENFNEAKPIGFTMYTTCIVWLAFIPIFFGTAQSAEKLYIQTTTLTISMNLSASVALGMLYMPKVYIIIFHPELN-VQKRKRSFKAVVTAATMSSRLSHKPS 881
The following BLAST results are available for this feature:
|
