TCONS_00000874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000874
Unique NameTCONS_00000874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000874 ID=TCONS_00000874|Name=TCONS_00000874|organism=Clytia hemisphaerica|type=transcript|length=2539bp
GCTTTATTCTATAACAGCAATCCAGCTTTTATCAGTCAGTGACGATGTCT
GTTCCATAACAATTGTCTCTTGATTGTTCTCAAATTCTGTATTATCTTTT
CCACTCATCTCATCACCAGACGTTTTCTGATCGCAAAATTGGGCAGATAG
TTTCGTCAAAGAATTTGaatcatgaaaattttcacTCACAAATTCTTCAG
CTTCATTAAATGGCATAACCTTCCCAGAAGTGACAGGACCGCTCTGATTT
TTAATGTTTGTCAAAACACTCCATGTACAAGACCTTTCTTGCTTTAAACC
TTGCAATGAATCTGTCGATTGATTCGGTCCAGTCAACGTTTTAAGTGAAT
CACTACTGTAACTGTGGTTTGTTAAGGAACTATTTACTCGCCATTCTAAA
GTCGATGTTCTGGAAAGTCGTCGAACTTCTGGTGCATTCATAACACTTGC
TAAACGATCACGTTGGAATGCTTCAGTCGTATTCTCTTCAGGGTAAAAAA
GAATCAATTTAATCTTATAACCatacaaaaacaataaaaggACAATATTA
ATAACCAATGTTAACATTGCAACCAAAAAGTCGATTTTCGTTTGATCTCT
TGTACTCAATCTCAAAGGAATGCCGATAGACCCTAATAAAACAGTTGTAA
ACATTGCGAAGAATGTATATTGCGCTTCATTGAATCTGCCAGGTAGCCCA
CGACCTCTGAAAGACTGTACGCCGCATACAATAAGTAGAATTAGGAGATA
ACAAATCTGTACGAAATAATGATCAAGTAGTTTTTCACATCTATGTTGTA
AAGTATAGTTAGTTCTATCTGTAACCGTTTTTATGGAAACTGCATGGAAA
GAAATTGTTATAATGACAATAGAGACATTTACCAGTACGGTTAGAATCAA
GATTCCCATCTCCTTGGTGGTCTGTTGCAATGCTTCTCCTTTGGTGAGTT
TGAATTTAAGATTAAATACAGTCAGAAGATGTGTTACTTTGACCAGCGAA
ATTCCAATTATAATAGTCAGTAGGATCCCTGTTAGATAGACTCGAGCTGT
ACATCTGTATGTTGTTTCAATGTTGCCGACGAATAACAAAGGTGTAAAGG
CTAGTGCCAAGTGAGCTGATATTTGAATTATGGATAATATAATGTTTGAC
GATCTTACAATAGGTGTTTGACTATATTTGTAAAAGACTGTTGAAATTAC
TGCAATAAGGCAGATTGTTGTGCCAGTTGTGACGAATAAAAGGATAGTAC
GCCATTCGCTCCACGTTAGGTAATCAACGGTCAATAATATGCATTTTGTT
TTATCAATGTTGGTAACACTGTTCAGAGGGCAACTAATGCATTTCTCTAA
AccggttttgtttttgaaattgtttcggtcACATGGTACGCAGAACCAAC
AACACGTGTTCGATGAATCGAATAAAGGGTAAAATCCTGGTCGACATTCT
TCTGAACATTTCGAAGACATATTACCAGTAGCTTTCTGTAAAATATTGCT
CTCCAAGTGAATGTCTGGTTTTGAATTGTCTTTTTGAGACCACTGTAAAG
TAAGTTGAAAATCTATTTCAATTTTATAGAGACTCCTTTTGGTGATGTAT
AATTCGTATCTGGCATGATTTGTTTCGCCATTCTCCTTGAACTTAAGGTT
TTCTCCGTTTAGATTGTTAAATGAAACATTATTCAAGTATAATCGATTGA
ATTTTCTATGGTTTATAAGTGGATACGTAATACAATGGTATGGATCAATT
CCCTGTGGGCATGGTATTTGCTTATCCAAGAAGAAACTATTAAAGGCTCT
GGTGAGTGCATGGAGACTTTCGTAGATAGCACCTAACCTGGTTAAATCCA
ATGTCAAACCCATGTCTTTCAATGTACTATTTCTGTCTTTTACTTTCATA
CTTTCAAATAGTTTTCTCAAAAAGGTTTTAGTTTGATCCTGATGAACAGC
TTGGTAAGAAATATTTAGTAGTTGATCCTCGAATTCTTGGTCTTTCCCAT
AATTAAGAACCACCGACAAAAAAATCCCACTCAAATGATTGTCTCTGTAC
ATGTCAGTAACTCCAGAGTCCTCGCTGATAATCCATATAAAATCCTTCAT
TCTATACCTTGCAGCTATGTCAAAGAATTTTTCAACTGTTTCTTTTAAAG
CCCAAATCACGACAACTTTAGACGAATTCTGTTCATTTATCTGTAAAACG
GTATTCTCCATTGTATGTACTTTGTCAACATCGAAAATCAGTTTCATATT
TAAACAAATATTATTTGATTTGAATACATCCTCCAATATGGCAATCCCAG
AACGTCCATACACGTCATCCGATCCTACAGTAAAAATGAAATACACCAAT
GATGCGATAGATCCCTGGCTTTGTTACATATTCACCAGCACTGTTGGAAG
TTAGAATCGACAACATCAATAGAATAGTAAGTGAACATTGATTCATTTTA
TTAAAACAAACATCGAACtcctttttcttaaaaataagaCGTCTTAATTT
CTCTTCATCGAAAATTCATAAACTTATTAGTTAGTGGCT
Run BLAST on NCBI

transcript from alignment at sc0000005:1234217..1237219-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000874 ID=TCONS_00000874|Name=TCONS_00000874|organism=Clytia hemisphaerica|type=transcript|length=3003bp|location=Sequence derived from alignment at sc0000005:1234217..1237219- (Clytia hemisphaerica)
GCTTTATTCTATAACAGCAATCCAGCTTTTATCAGTCAGTGACGATGTCT GTTCCATAACAATTGTCTCTTGATTGTTCTCAAATTCTGTATTATCTTTT CCACTCATCTCATCACCAGACGTTTTCTGATCGCAAAATTGGGCAGATAG TTTCGTCAAAGAATTTGAATCATGAAAATTTTCACTCACAAATTCTTCAG CTTCATTAAATGGCATAACCTTCCCAGAAGTGACAGGACCGCTCTGATTT TTAATGTTTGTCAAAACACTCCATGTACAAGACCTTTCTTGCTTTAAACC TTGCAATGAATCTGTCGATTGATTCGGTCCAGTCAACGTTTTAAGTGAAT CACTACTGTAACTGTGGTTTGTTAAGGAACTATTTACTCGCCATTCTAAA GTCGATGTTCTGGAAAGTCGTCGAACTTCTGGTGCATTCATAACACTTGC TAAACGATCACGTTGGAATGCTTCAGTCGTATTCTCTTCAGGGTAAAAAA GAATCAATTTAATCTTATAACCATACAAAAACAATAAAAGGACAATATTA ATAACCAATGTTAACATTGCAACCAAAAAGTCGATTTTCGTTTGATCTCT TGTACTCAATCTCAAAGGAATGCCGATAGACCCTAATAAAACAGTTGTAA ACATTGCGAAGAATGTATATTGCGCTTCATTGAATCTGCCAGGTAGCCCA CGACCTCTGAAAGACTGTACGCCGCATACAATAAGTAGAATTAGGAGATA ACAAATCTGTACGAAATAATGATCAAGTAGTTTTTCACATCTATGTTGTA AAGTATAGTTAGTTCTATCTGTAACCGTTTTTATGGAAACTGCATGGAAA GAAATTGTTATAATGACAATAGAGACATTTACCAGTACGGTTAGAATCAA GATTCCCATCTCCTTGGTGGTCTGTTGCAATGCTTCTCCTTTGGTGAGTT TGAATTTAAGATTAAATACAGTCAGAAGATGTGTTACTTTGACCAGCGAA ATTCCAATTATAATAGTCAGTAGGATCCCTGTTAGATAGACTCGAGCTGT ACATCTGTATGTTGTTTCAATGTTGCCGACGAATAACAAAGGTGTAAAGG CTAGTGCCAAGTGAGCTGATATTTGAATTATGGATAATATAATGTTTGAC GATCTTACAATAGGTGTTTGACTATATTTGTAAAAGACTGTTGAAATTAC TGCAATAAGGCAGATTGTTGTGCCAGTTGTGACGAATAAAAGGATAGTAC GCCATTCGCTCCACGTTAGGTAATCAACGGTCAATAATATGCATTTTGTT TTATCAATGTTGGTAACACTGTTCAGAGGGCAACTAATGCATTTCTCTAA ACCGGTTTTGTTTTTGAAATTGTTTCGGTCACATGGTACGCAGAACCAAC AACACGTGTTCGATGAATCGAATAAAGGGTAAAATCCTGGTCGACATTCT TCTGAACATTTCGAAGACATATTACCAGTAGCTTTCTGTAAAATATTGCT CTCCAAGTGAATGTCTGGTTTTGAATTGTCTTTTTGAGACCACTGTAAAG TAAGTTGAAAATCTATTTCAATTTTATAGAGACTCCTTTTGGTGATGTAT AATTCGTATCTGGCATGATTTGTTTCGCCATTCTCCTTGAACTTAAGGTT TTCTCCGTTTAGATTGTTAAATGAAACATTATTCAAGTATAATCGATTGA ATTTTCTATGGTTTATAAGTGGATACGTAATACAATGGTATGGATCAATT CCCTGTGGGCATGGTATTTGCTTATCCAAGAAGAAACTATTAAAGGCTCT GGTGAGTGCATGGAGACTTTCGTAGATAGCACCTAACCTGGTTAAATCCA ATGTCAAACCCATGTCTTTCAATGTACTATTTCTGTCTTTTACTTTCATA CTTTCAAATAGTTTTCTCAAAAAGGTTTTAGTTTGATCCTGATGAACAGC TTGGTAAGAAATATTTAGTAGTTGATCCTCGAATTCTTGGTCTTTCCCAT AATTAAGAACCACCGACAAAAAAATCCCACTCAAATGATTGTCTCTGTAC ATGTCAGTAACTCCAGAGTCCTCGCTGATAATCCATATAAAATCCTTCAT TCTATACCTTGCAGCTATGTCAAAGAATTTTTCAACTGTTTCTTTTAAAG CCCAAATCACGACAACTTTAGACGAATTCTGTTCATTTATCTGTAAAACG GTATTCTCCATTGTATGTACTTTGTCAACATCGAAAATCAGTTTCATATT TAAACAAATATTATTTGATTTGAATACATCCTCCAATATGGCAATCCCAG AACGTCCATACACGTCATCCGATCCTACAGTAAAAATGTAAGTCCATTCA AACTCTAGTAAAACATCTTTAATAAACGTGGCTTGTTTAAAGTCATTGGG TACAGTTCTATAAAAACTCTCTGTTGGAATCAAATCAATGCTGGTAGCTG CATAGCTCACTACCGTTAGATTCTCATAAGAAAGTAATGAATTCAGAAAC ACAGCATTTGAAGAAGACCGGGGTCCAATGATACCAAGCGTTTTATACAA AGCTACATTTTGATCTACACATTGGCACTGATCCGTATCTGTAAACAGCA CACCATCGGAACCGCCTAATAGTATCTTAACAGCAATTGAAGTCAGTTCT GGTGAAGGCTGGTTATGTCCACTATCGAAAATTTGATAACCAAAAAAATC TTCACCCAAATCTTTATTAATCTTGTCGATAGAGTATTTAAAATACTCCG ACCATATGACTGCATCTGTGTTAATTCTGTCCTCAGTTTTTGATCTTATA GGAAATACACCAATGATGCGATAGATCCCTGGCTTTGTTACATATTCACC AGCACTGTTGGAAGTTAGAATCGACAACATCAATAGAATAGTAAGTGAAC ATTGATTCATTTTATTAAAACAAACATCGAACTCCTTTTTCTTAAAAATA AGACGTCTTAATTTCTCTTCATCGAAAATTCATAAACTTATTAGTTAGTG GCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000517XLOC_000517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000874-exon-sc0000005-1575043694:1234883..1237219TCONS_00000874-exon-sc0000005-1575043694:1234883..1237219Clytia hemisphaericaexon
TCONS_00000874-exon-sc0000005-1575043694:1234217..1234418TCONS_00000874-exon-sc0000005-1575043694:1234217..1234418Clytia hemisphaericaexon
TCONS_00000874-exon-sc0000005-1510915933:1234883..1237219TCONS_00000874-exon-sc0000005-1510915933:1234883..1237219Clytia hemisphaericaexon
TCONS_00000874-exon-sc0000005-1510915933:1234217..1234418TCONS_00000874-exon-sc0000005-1510915933:1234217..1234418Clytia hemisphaericaexon
TCONS_00000874-exon-sc0000005-1491911889:1234883..1237219TCONS_00000874-exon-sc0000005-1491911889:1234883..1237219Clytia hemisphaericaexon
TCONS_00000874-exon-sc0000005-1491911889:1234217..1234418TCONS_00000874-exon-sc0000005-1491911889:1234217..1234418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1234217..1237219 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0474197 0 0.0195761 0.0183269 0.089541 0 0.185118 0 0.00187251 0 0.0943618 0 0.0442438 0.00959317 0.707096 0.00018109 3.65982e-07 0 0 0.0135184 0 0.417771 0.000151564 15.3327 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
IPR011500GPCR_3_9-Cys_dom
IPR017978GPCR_3_C
IPR028082Peripla_BP_I
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
BLAST of TCONS_00000874 vs. Swiss-Prot (Human)
Match: GRM7 (Metabotropic glutamate receptor 7 OS=Homo sapiens GN=GRM7 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.680e-29
Identity = 151/689 (21.92%), Postives = 285/689 (41.36%), Query Frame = -2
Query:  400 FIFTVGSDDVYGRSGIAILEDVFK-SNNICLNMKLIFDV---DKVHTMENTVLQINEQNSSKVVVIWALKETVEKFFDIAARY-RMKDFIWIISEDSG--VTDMYRDNHLSGIFLSVVLN---------YGKDQEFEDQLLNISYQAVHQDQTKTFLRKLFESMKVKDRNSTLKD-MGLTLDLTRLG-------AIYESLHALTRAFNSFFLDKQIPCPQGIDPYHCITYPLINHRKFNRL--YLNNVSFNNLNGENLKFKENGETNHARYELYITKRSLYKIEIDFQLTLQWSQKDNSKPDIHLESNILQKATGNM---SSKCSEECRPGFYPLFDSSNTCCWFCVPCDRNNFKNKTGLEKCISCPLNSVTNIDKTKCILLTVDYLTW-SEWRTILLFVTTGTTICLIAVISTVFYKYSQTPIVRXXXXXXXXXXXXXXXXXAFTPLLFVGNIETTYRCTARVYXXXXXXXXXXXISLVKVTHLLTVFNLKFKLTKGEALQQTTKEMGILILTVLVNVSIVIITISFHAVSIKTVTDRTNYTLQH--------RCEKLLDHYFVQICYLLILLIVCGVQSFRGRGLPGRFNEAQYTFFAMFTTVLLGSIGIPLRLST-RDQTKIDFLVAMLTLVINI---VLLLFLYGYKIKLILFYPEENTTEAFQRDRLASVMNAPEVRRLSRTST 2340
            ++ T+ S+  YG  G+     + K +  +C+   +       D+    +  + Q+ +  +S+ VVI+A  E +++    A R  ++  F+W+ S+  G  +  +++   ++   +++            Y   +  E+   N+ +    ++     L       +  DR  T ++ +G   +  + G       A+Y   HAL         D +  CP+            +      +L  Y+ NV+FN   G  + F +NG+    RY+++   ++       ++L  QW+       ++ L    +Q   G     +S C+  C+PG          CCW C PCD   ++ +     C  CP +   N ++T C  + +  L W S W  I +F+     I  I V++T F +Y+ TPIVR+S   LS + ++          L +   +    C+ R    G+ + I     L K   +  +F    K      L   T ++ I   + L++V ++ + I F       + D   +   +        +C+         + Y ++L++ C V + + RG+P  FNEA+   F M+TT ++    IP+   T +   K+      LT+ +N+   V L  LY  K+ +I+F+PE N  +  +R   A V  A    RLS   +
Sbjct:  220 YVSTLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPE------------MEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIF-QYQTTNTSNPGYRLIGQWTD------ELQLNIEDMQWGKGVREIPASVCTLPCKPGQRKKTQKGTPCCWTCEPCD--GYQYQFDEMTCQHCPYDQRPNENRTGCQDIPIIKLEWHSPWAVIPVFLAMLGIIATIFVMAT-FIRYNDTPIVRASGRELSYVLLTGIFLCYIITFLMIAKPDVAV-CSFRRVFLGLGMCISYAALLTKTNRIYRIFEQGKKSVTAPRLISPTSQLAIT--SSLISVQLLGVFIWFGVDPPNIIIDYDEHKTMNPEQARGVLKCDITDLQIICSLGYSILLMVTCTVYAIKTRGVPENFNEAKPIGFTMYTTCIVWLAFIPIFFGTAQSAEKLYIQTTTLTISMNLSASVALGMLYMPKVYIIIFHPELN-VQKRKRSFKAVVTAATMSSRLSHKPS 881          
The following BLAST results are available for this feature:
BLAST of TCONS_00000874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM73.680e-2921.92Metabotropic glutamate receptor 7 OS=Homo sapiens ... [more]
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