TCONS_00000848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000848
Unique NameTCONS_00000848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000848 ID=TCONS_00000848|Name=TCONS_00000848|organism=Clytia hemisphaerica|type=transcript|length=2042bp
CTAAAACCAATGTGGCGAATTGTACTGACGTAAATGTATGGATAGAAATT
ACTTTCGCTGCACTTTCTGGATTAGGACTATTACTTTTACTTGTTTTCAC
TTGTGTATTTTGGTGTTGTTGTAAGGGAGAAAATACATTCCTGACTGTTA
AATGTTCAAATGTTGCGTTCATTTTGGTTGGAGCTGTTTGTTTCTTAGGT
ATCTCCCTCgttcaagatgaagttatataTTTTGGAGTAGTTATTGCTTT
TTTATTAATATCAATAATATACATTTGGATTGGGTATAAAGTACTGTTTA
CCAAGCCCTCAAATGGAAATGCAAtccaaaatgaaagaaatgagTTACAC
TTATTAAACTTTATCAAGTTAATAACTTCAGTGATGATCTTACAGGAACT
CATATACTTCATCGTATCAGCGCGTTTTGGCCATGGTGACCGTACAAGAC
AATGTCTTCTTTTTGCATCTGCAGCGTTTCAAAAGCTCATCCAGATCATC
TTTTTCTTAAGATTGACCAAATCAATTCCAAAGAAAAATCGTTCACATAG
CGCATCTTGGTACTGTAAAATCATTGCCTtgatcaatttctttttttggg
TTGAGTCAATTAAAGTGACGAAAGACCGCGAGAAGGATGCGAACATGGAA
ATCGGGCTTGGAATTAATTTCTATCCTATTTTCACGAGAACGTACACAGC
CTTGATTGTTGACTATCGCTTGGTCTCTTGCACATTGTTTGTGcaaaaag
ctttagaaattgATGCAACACCTGAAACAAATGAAGCCGAAAGTGAAAAT
CCATGCTGCCCAGACCCTCTAAGCTATTCTTGGCGGTTACCAAACTGTCC
AGGCTGGTTATGTCACAAAGTATGTGCCAACAGATTTTTGATAGCTTTGG
TCATTGTATTACTTTCATTATTGCAGCTCTTTAATTTCTTCGAGGATAAA
GGCCTTGGACCTTGGGCAAACATCGTGGGAATACTTGCTGCATGGTCATT
CTTCGCTGCTGGTTTGTGGCTTTTGATAGAGGCCAGGTCATTAAATTATG
ATGATTCGGAAGAGCAAGAAAATGTTGGTATCAATTATCTCATGATCATA
ATGGGTTTTGTTAGCATAATGTTCTGGACTGCACTCTCAGTATCAACGAT
AGCATGGTCGGTTGGAGCAAAATCTACAGGTGATAAAAGATTCCCATACT
TGGCATTGACATCAGCGAAAATTGTTAGTTTCGCATTGATACAGATGTTC
CAAGTTTATGTTTTCAAGAAAGTTCGTGTTGGTTACGCCAAAACATTTCG
ATTGAAGAAACATTTGTATTGTTTGATCTTGTTTTTAATTGTCACCTCGC
TGGCTTTGCTTGTCAATTACACTATATGTGAATATAGTTATTATGTTGAT
CAGTTGATTGAAAATGCAAATTACACAATGGTGATTCGATTTTTGTTTGC
AATCGGTCAACCAATGGGTATCGCTTTCTCCTGCCATATTGTTCTCCACT
TCTTCACCATCTACTGGCAGATGGAACCTGAGCACAATGAATCTGAGCAC
AATGACACACCTTCGGCTGACGAAACAACACCTCTGACCATgaaggtata
aagaaaaacaggagttgacttttataaaatgtatcacaAGAAAATActaa
tctcgtctcatctaatttctaaagcttaaatgagtcAATAAGAgtcacct
atggataaaagagctcattaaaaatgcacgatatatgagattatgagcat
atgcatacatcgtaacttttttaatcatagggcgagcttggttacaatag
catacactttttgtttctttatacctccatgctctGACTTGAACACTTAA
ACATCAATGGCTCCtataattgaaaaaataacaacGTTTAGTTAAAGCCA
CTGGTATGTGTGAGCCATAAGAGTACCCTCAAATGGGTAAAAACTCATAG
GTtggtctctcaaagggtcccaaaatcactaaAATGGAGAATTTCTCTCA
AACTGTGACCAAAACttgataaaaatcaaatcaaattttcgg
Run BLAST on NCBI

protein sequence of TCONS_00000848-protein

>TCONS_00000848-protein ID=TCONS_00000848-protein|Name=TCONS_00000848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=532bp
KTNVANCTDVNVWIEITFAALSGLGLLLLLVFTCVFWCCCKGENTFLTVK
CSNVAFILVGAVCFLGISLVQDEVIYFGVVIAFLLISIIYIWIGYKVLFT
KPSNGNAIQNERNELHLLNFIKLITSVMILQELIYFIVSARFGHGDRTRQ
CLLFASAAFQKLIQIIFFLRLTKSIPKKNRSHSASWYCKIIALINFFFWV
ESIKVTKDREKDANMEIGLGINFYPIFTRTYTALIVDYRLVSCTLFVQKA
LEIDATPETNEAESENPCCPDPLSYSWRLPNCPGWLCHKVCANRFLIALV
IVLLSLLQLFNFFEDKGLGPWANIVGILAAWSFFAAGLWLLIEARSLNYD
DSEEQENVGINYLMIIMGFVSIMFWTALSVSTIAWSVGAKSTGDKRFPYL
ALTSAKIVSFALIQMFQVYVFKKVRVGYAKTFRLKKHLYCLILFLIVTSL
ALLVNYTICEYSYYVDQLIENANYTMVIRFLFAIGQPMGIAFSCHIVLHF
FTIYWQMEPEHNESEHNDTPSADETTPLTMKV
Run BLAST on NCBI

transcript from alignment at sc0000005:1021302..1023555-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000848 ID=TCONS_00000848|Name=TCONS_00000848|organism=Clytia hemisphaerica|type=transcript|length=2254bp|location=Sequence derived from alignment at sc0000005:1021302..1023555- (Clytia hemisphaerica)
CTAAAACCAATGTGGCGAATTGTACTGACGTAAATGTATGGATAGAAATT
ACTTTCGCTGCACTTTCTGGATTAGGACTATTACTTTTACTTGTTTTCAC
TTGTGTATTTTGGTGTTGTTGTAAGGGAGAAAATACATTCCTGACTGTTA
AATGTTCAAATGTTGCGTTCATTTTGGTTGGAGCTGTTTGTTTCTTAGGT
ATCTCCCTCGTTCAAGATGAAGTTATATATTTTGGAGTAGTTATTGCTTT
TTTATTAATATCAATAATATACATTTGGATTGGGTATAAAGTACTGTTTA
CCAAGCCCTCAAATGGAAATGCAATCCAAAATGAAAGAAATGAGTTACAC
TTATTAAACTTTATCAAGTTAATAACTTCAGTGATGATCTTACAGGAACT
CATATACTTCATCGTATCAGCGCGTTTTGGCCATGGTGACCGTACAAGAC
AATGTCTTCTTTTTGCATCTGCAGCGTTTCAAAAGCTCATCCAGATCATC
TTTTTCTTAAGATTGACCAAATCAATTCCAAAGAAAAATCGTTCACATAG
CGCATCTTGGTACTGTAAAATCATTGCCTTGATCAATTTCTTTTTTTGGG
TTGAGTCAATTAAAGTGACGAAAGACCGCGAGAAGGATGCGAACATGGAA
ATCGGGCTTGGAATTAATTTCTATCCTATTTTCACGAGAACGTACACAGC
CTTGATTGTTGACTATCGCTTGGTCTCTTGCACATTGTTTGTGCAAAAAG
CTTTAGAAATTGATGCAACACCTGAAACAAATGAAGCCGAAAGTGAAAAT
CCATGCTGCCCAGACCCTCTAAGCTATTCTTGGCGGTTACCAAACTGTCC
AGGCTGGTTATGTCACAAAGTATGTGCCAACAGATTTTTGATAGCTTTGG
TCATTGTATTACTTTCATTATTGCAGCTCTTTAATTTCTTCGAGGATAAA
GGCCTTGGACCTTGGGCAAACATCGTGGGAATACTTGCTGCATGGTCATT
CTTCGCTGCTGGTTTGTGGCTTTTGATAGAGGTATGCTTTGAAACAGTTT
AAAGAGACAATCCAATAACAACGAAAGCTGTTAAAATGTTTACTCTCGGA
ATATTGTTTGTATTCAAAAACTTTTCTGTGGCAGTTACAGCAGTATAATT
TTAACATTTTAAGGCTTTTAAGTTCAATAAGATCAACTCACTTGACAAGC
TTATTTGACAATTTATCACACTATTGGTATATTTTACTTACAGGCCAGGT
CATTAAATTATGATGATTCGGAAGAGCAAGAAAATGTTGGTATCAATTAT
CTCATGATCATAATGGGTTTTGTTAGCATAATGTTCTGGACTGCACTCTC
AGTATCAACGATAGCATGGTCGGTTGGAGCAAAATCTACAGGTGATAAAA
GATTCCCATACTTGGCATTGACATCAGCGAAAATTGTTAGTTTCGCATTG
ATACAGATGTTCCAAGTTTATGTTTTCAAGAAAGTTCGTGTTGGTTACGC
CAAAACATTTCGATTGAAGAAACATTTGTATTGTTTGATCTTGTTTTTAA
TTGTCACCTCGCTGGCTTTGCTTGTCAATTACACTATATGTGAATATAGT
TATTATGTTGATCAGTTGATTGAAAATGCAAATTACACAATGGTGATTCG
ATTTTTGTTTGCAATCGGTCAACCAATGGGTATCGCTTTCTCCTGCCATA
TTGTTCTCCACTTCTTCACCATCTACTGGCAGATGGAACCTGAGCACAAT
GAATCTGAGCACAATGACACACCTTCGGCTGACGAAACAACACCTCTGAC
CATGAAGGTATAAAGAAAAACAGGAGTTGACTTTTATAAAATGTATCACA
AGAAAATACTAATCTCGTCTCATCTAATTTCTAAAGCTTAAATGAGTCAA
TAAGAGTCACCTATGGATAAAAGAGCTCATTAAAAATGCACGATATATGA
GATTATGAGCATATGCATACATCGTAACTTTTTTAATCATAGGGCGAGCT
TGGTTACAATAGCATACACTTTTTGTTTCTTTATACCTCCATGCTCTGAC
TTGAACACTTAAACATCAATGGCTCCTATAATTGAAAAAATAACAACGTT
TAGTTAAAGCCACTGGTATGTGTGAGCCATAAGAGTACCCTCAAATGGGT
AAAAACTCATAGGTTGGTCTCTCAAAGGGTCCCAAAATCACTAAAATGGA
GAATTTCTCTCAAACTGTGACCAAAACTTGATAAAAATCAAATCAAATTT
TCGG

Coding sequence (CDS) from alignment at sc0000005:1021302..1023555-

>TCONS_00000848 ID=TCONS_00000848|Name=TCONS_00000848|organism=Clytia hemisphaerica|type=CDS|length=3198bp|location=Sequence derived from alignment at sc0000005:1021302..1023555- (Clytia hemisphaerica)
GCCAGGTCATTAAATTATGATGATTCGGAAGAGCAAGAAAATGTTGGTAT
CAATTATCTCATGATCATAATGGGTTTTGTTAGCATAATGTTCTGGACTG
CACTCTCAGTATCAACGATAGCATGGTCGGTTGGAGCAAAATCTACAGGT
GATAAAAGATTCCCATACTTGGCATTGACATCAGCGAAAATTGTTAGTTT
CGCATTGATACAGATGTTCCAAGTTTATGTTTTCAAGAAAGTTCGTGTTG
GTTACGCCAAAACATTTCGATTGAAGAAACATTTGTATTGTTTGATCTTG
TTTTTAATTGTCACCTCGCTGGCTTTGCTTGTCAATTACACTATATGTGA
ATATAGTTATTATGTTGATCAGTTGATTGAAAATGCAAATTACACAATGG
TGATTCGATTTTTGTTTGCAATCGGTCAACCAATGGGTATCGCTTTCTCC
TGCCATATTGTTCTCCACTTCTTCACCATCTACTGGCAGATGGAACCTGA
GCACAATGAATCTGAGCACAATGACACACCTTCGGCTGACGAAACAACAC
CTCTGACCATGAAGGTATAAAAAACCAATGTGGCGAATTGTACTGACGTA
AATGTATGGATAGAAATTACTTTCGCTGCACTTTCTGGATTAGGACTATT
ACTTTTACTTGTTTTCACTTGTGTATTTTGGTGTTGTTGTAAGGGAGAAA
ATACATTCCTGACTGTTAAATGTTCAAATGTTGCGTTCATTTTGGTTGGA
GCTGTTTGTTTCTTAGGTATCTCCCTCGTTCAAGATGAAGTTATATATTT
TGGAGTAGTTATTGCTTTTTTATTAATATCAATAATATACATTTGGATTG
GGTATAAAGTACTGTTTACCAAGCCCTCAAATGGAAATGCAATCCAAAAT
GAAAGAAATGAGTTACACTTATTAAACTTTATCAAGTTAATAACTTCAGT
GATGATCTTACAGGAACTCATATACTTCATCGTATCAGCGCGTTTTGGCC
ATGGTGACCGTACAAGACAATGTCTTCTTTTTGCATCTGCAGCGTTTCAA
AAGCTCATCCAGATCATCTTTTTCTTAAGATTGACCAAATCAATTCCAAA
GAAAAATCGTTCACATAGCGCATCTTGGTACTGTAAAATCATTGCCTTGA
TCAATTTCTTTTTTTGGGTTGAGTCAATTAAAGTGACGAAAGACCGCGAG
AAGGATGCGAACATGGAAATCGGGCTTGGAATTAATTTCTATCCTATTTT
CACGAGAACGTACACAGCCTTGATTGTTGACTATCGCTTGGTCTCTTGCA
CATTGTTTGTGCAAAAAGCTTTAGAAATTGATGCAACACCTGAAACAAAT
GAAGCCGAAAGTGAAAATCCATGCTGCCCAGACCCTCTAAGCTATTCTTG
GCGGTTACCAAACTGTCCAGGCTGGTTATGTCACAAAGTATGTGCCAACA
GATTTTTGATAGCTTTGGTCATTGTATTACTTTCATTATTGCAGCTCTTT
AATTTCTTCGAGGATAAAGGCCTTGGACCTTGGGCAAACATCGTGGGAAT
ACTTGCTGCATGGTCATTCTTCGCTGCTGGTTTGTGGCTTTTGATAGAGG
CCAGGTCATTAAATTATGATGATTCGGAAGAGCAAGAAAATGTTGGTATC
AATTATCTCATGATCATAATGGGTTTTGTTAGCATAATGTTCTGGACTGC
ACTCTCAGTATCAACGATAGCATGGTCGGTTGGAGCAAAATCTACAGGTG
ATAAAAGATTCCCATACTTGGCATTGACATCAGCGAAAATTGTTAGTTTC
GCATTGATACAGATGTTCCAAGTTTATGTTTTCAAGAAAGTTCGTGTTGG
TTACGCCAAAACATTTCGATTGAAGAAACATTTGTATTGTTTGATCTTGT
TTTTAATTGTCACCTCGCTGGCTTTGCTTGTCAATTACACTATATGTGAA
TATAGTTATTATGTTGATCAGTTGATTGAAAATGCAAATTACACAATGGT
GATTCGATTTTTGTTTGCAATCGGTCAACCAATGGGTATCGCTTTCTCCT
GCCATATTGTTCTCCACTTCTTCACCATCTACTGGCAGATGGAACCTGAG
CACAATGAATCTGAGCACAATGACACACCTTCGGCTGACGAAACAACACC
TCTGACCATGAAGGTATAAAAAACCAATGTGGCGAATTGTACTGACGTAA
ATGTATGGATAGAAATTACTTTCGCTGCACTTTCTGGATTAGGACTATTA
CTTTTACTTGTTTTCACTTGTGTATTTTGGTGTTGTTGTAAGGGAGAAAA
TACATTCCTGACTGTTAAATGTTCAAATGTTGCGTTCATTTTGGTTGGAG
CTGTTTGTTTCTTAGGTATCTCCCTCGTTCAAGATGAAGTTATATATTTT
GGAGTAGTTATTGCTTTTTTATTAATATCAATAATATACATTTGGATTGG
GTATAAAGTACTGTTTACCAAGCCCTCAAATGGAAATGCAATCCAAAATG
AAAGAAATGAGTTACACTTATTAAACTTTATCAAGTTAATAACTTCAGTG
ATGATCTTACAGGAACTCATATACTTCATCGTATCAGCGCGTTTTGGCCA
TGGTGACCGTACAAGACAATGTCTTCTTTTTGCATCTGCAGCGTTTCAAA
AGCTCATCCAGATCATCTTTTTCTTAAGATTGACCAAATCAATTCCAAAG
AAAAATCGTTCACATAGCGCATCTTGGTACTGTAAAATCATTGCCTTGAT
CAATTTCTTTTTTTGGGTTGAGTCAATTAAAGTGACGAAAGACCGCGAGA
AGGATGCGAACATGGAAATCGGGCTTGGAATTAATTTCTATCCTATTTTC
ACGAGAACGTACACAGCCTTGATTGTTGACTATCGCTTGGTCTCTTGCAC
ATTGTTTGTGCAAAAAGCTTTAGAAATTGATGCAACACCTGAAACAAATG
AAGCCGAAAGTGAAAATCCATGCTGCCCAGACCCTCTAAGCTATTCTTGG
CGGTTACCAAACTGTCCAGGCTGGTTATGTCACAAAGTATGTGCCAACAG
ATTTTTGATAGCTTTGGTCATTGTATTACTTTCATTATTGCAGCTCTTTA
ATTTCTTCGAGGATAAAGGCCTTGGACCTTGGGCAAACATCGTGGGAATA
CTTGCTGCATGGTCATTCTTCGCTGCTGGTTTGTGGCTTTTGATAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000510XLOC_000510Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000848-proteinTCONS_00000848-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000848-exon-sc0000005-1575043694:1022525..1023555TCONS_00000848-exon-sc0000005-1575043694:1022525..1023555Clytia hemisphaericaexon
TCONS_00000848-exon-sc0000005-1575043694:1021302..1022312TCONS_00000848-exon-sc0000005-1575043694:1021302..1022312Clytia hemisphaericaexon
TCONS_00000848-exon-sc0000005-1510915933:1022525..1023555TCONS_00000848-exon-sc0000005-1510915933:1022525..1023555Clytia hemisphaericaexon
TCONS_00000848-exon-sc0000005-1510915933:1021302..1022312TCONS_00000848-exon-sc0000005-1510915933:1021302..1022312Clytia hemisphaericaexon
TCONS_00000848-exon-sc0000005-1491911889:1022525..1023555TCONS_00000848-exon-sc0000005-1491911889:1022525..1023555Clytia hemisphaericaexon
TCONS_00000848-exon-sc0000005-1491911889:1021302..1022312TCONS_00000848-exon-sc0000005-1491911889:1021302..1022312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1021302..1023555 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0783911	0.0574807	0.0451972	0.110578	0.052885	0.0206301	0.0249003	0.0701349	0.14747	0.649966	0.0589833	0.206712	1.40545	0.978711	3.11776	2.39835	0.248216	0.329066	1.279	1.01339	0.327367	0.138202	0.18098	0.101749	0.209696	0.166954	0.0541364	0.146017	0.132945	0.0910989
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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