TCONS_00000844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000844
Unique NameTCONS_00000844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000844 ID=TCONS_00000844|Name=TCONS_00000844|organism=Clytia hemisphaerica|type=transcript|length=4164bp
cAACGAACCTAGAAGTACAAGATGCTCCTGCCTTTGACTTCAATAAGCTT
CAAAGCCCACTATTGTGAAATTGAGCAATCCAGAGACATCGATTGGACAA
CGTGACCATCTCTCGGACACCGATAAGGAACAACTCAACCTGCTGTACAG
TTGCACAAGTAAAGACAAACAAGGATGGAGTAATTGGTCAGAATACGGTC
CATGTACCAAAGAAGGTCGACGTGAACGATCGCGTTTCTGTATGCACCCT
ACTGATAAAACAAGCTGTCCCAACCCAACAAACACCATGTATTTACACTA
CGGTGTTGATACTGAGGTTCAAACTGGATGCGCTTATTATCAGGATGGTC
ATTGGGGTCGATGGAGCAGCTGGGGATCATGTTCAGTGACTTGCGCTATT
GGCACCAAATCACGTACTCGAAAATGTGACGACCCAGCACCATCAACTAA
TGGTGCACCATGTAAAGGACTTTCAGTGCAAAGTGCAAGCTGTGAAATGA
TCAGTTGTGATGCAGGACCATACGATTGTACATTTGAAGCGGAAACCACG
CCAACATGTAAATGGACCAAAGATTTGAACGCTGATTTTCAATGGCGACG
ACACACTGGAAGTACACCCTCATCCAGCACCGGTCCCTCTGGTGATCATA
CTTCAGGAACTGGTTACTATATGTACATCGAATCATCATCTCCTGCGATG
GTTGGATATAAAGCTCGTTTGGTGAGTCCACAAATAAAGGCTGGTGTTCA
CTGCTTGGCTTTCTGGTATAACATGTATGGATTCTCTACTGGATCACTGA
ATGTTTATTTGGAAGGAAGCCAAGAACAACTTTTCACTTTGAGTGGTGAC
CAACTTAAAGATTGGCATTTGAAGAGATTGAAGATTGACAGCGCTGGAGA
ATTCAAGATTGTCATCGAAGCAGTTCGTGGCAGCAGTTTCCAAGGGGATA
TCGCTATTGATGATATCAAGGTTAAAGATGGTCCATGTTTTGcCCCACCA
ACCCCTCTTCCAACAACCACCGAAGAAACCACCACCACTGATCCGCCAAC
AACCACCACAGAGCCGCCCACCACCACAGAGCCGCCCACCACCGCAACTA
GCACTACAACTCCACTGCCAACAACAACCACTACTGAACTAACTACTACT
CCAGAACCTCACATCCCCGAAGctgTACCCGTTGGATGTTACAAAGATTT
CGGTTACATTGATAGCAAACGTCCATTCAGCAAATACAAAGATTTGAGCA
GCATTGTCATCTGGTCTGCCGATGTGGAATTcgcaaaaaacaattttaaa
gatGTCGTCGGAAACTGTTCAGCCTACGCAAGAGCTAATGGCTATCAGca
ttttgccATCCAGTATTACTACGAATGTTGGACTGGATCCAACGAAGACA
TCAATTATGGACGGGACGGTGAGAGTGTGGGTTGTTGGCCACAAGTTGAT
CAAAATGCTGGCCCATTTTTGATTGGTCAAGATTATTCGAATATGGTCTA
TAGATGGGAAGATTAAAATAtgaccaaatttctaaaaaattatcatttga
aagattttgaattgGTTTTCATCGAAAGAATATGAATTCTCAATCGCCTC
TACTTTTAAATTTGCTGATTTACTGAATCTTTGAATAAAATACATAATTA
TAGCGGAAATCTAATTTAGCGGATGGTCAAATAAGttagaaatttaattt
ggcggatgacggaaAGAATCTAAATTTGCCAGGAATTCAATTTGGTAGGT
GAAGgatatttttgaccaaaaaaacGCTATTTAATAAGATAAAACCTGtc
ttaaggcctgaaatagcacaattTAGGGGAATGAatataataatttaaat
tttgtaGGAATCTAATTTGGCGGATgatgggaaaaaataaatttggcggg
aaacTTAATTTTTGGTAGATTTCtgctaaatccgccaaattaaagtcgcc
aaaatttcttccttacTTTTAAGGTAATTTAATaccgaaaaatctttttt
tatcaaattgtaTTATATCTAAGTCAACAATTGCTGTATGACTGTATCAT
AATGGCGGGGTAAAACTGACCCCTTCTTTTGTCTACGGCTACCTTTTATg
gttttcttctttgataaataAGAACGTTCCGTGTCGTGTCTCTTGCTGAG
CTTGGGTCTTACATATtaagattttatgattttttgtttcaattcttttc
aattctgatccaaaaatacttttgaaatcGGAAATAATGTCACaataaat
aattgaaataatattttctgaTAAGTGACAAAATATGGAATAATTTCAAG
TGGACGAATGGTTTCATGGTTTCATGGTATCAAAGACTTTGTTACTTAGC
GGTCgttctttgtttatttatttatttatccaCTGTATAtctatattttt
gaattttaggatTCACTGGAACTATGGGAATTATGACTAACAGTAGTTAA
AACTTGTATCTATGGTTAAATTTCATTCAGATCATTTCACCGTAAAAATT
CTGAATGAATTGACAAAATTTCGAATCGGGTTATAAATAATTAAACGAAT
ACAAAAAGATAAGTATGATTATGTTTTgaatcgagaaaaaaatcctactg
aaaattttgtgtgaaggataaaaaagtcgaaaatataTACTACAGTCTAA
TTAAGGATAAAAGATGTGTTTTTGTTGTCATCCACAAAGGCATTATAAAC
TTCAACTTGAAGTGATCAACGAATACAGTAAGATCGAACGACAGCCTTAC
ATTATCGACGTTGAACCAGAAGAGCGCAATGTCTGTTGTTGTTTATGTGA
TGCTGGTGTCAACAGTCTTCATTTGAATAACCAGCCAACCGACCAAGTGA
TTTACGATAATGTGTGCTTCCCGCTTTGTTGTAAAGGAGGTGATTTCGAA
TGGCAGGATCGTGGTCATTATTTCCGACTCGAAATGCCGTCGTTGTATAT
TCACGACGGTTTATATGTTGACGGCAAAGAGATCAATAGCCGACGCTATA
ATCACACAGAATGGAAATGTCAATTCGCTGTTTGGTTGTTGATCGGGTTT
TTGGTTCTGGCGGCCGGTGTAGCGTTTATTGTTCTGCATTTTTTGGATTG
CTGTTGGGGTGGTTTCTTGTATTTGGGTATCTCATGTGTTCTAACGAGTG
TCTTTTCACTATTGGTGGGTTGTATCGGATGTTGCCGTATCTCAAAGCTA
GTCAGCCGTTACCGTGCTAACCAACGCGCCCAAGCAAAGGTTGCAAATGA
CAATTTCACACGAATTTAATGTCGATGAATGGGTTTTATATATGAAAAGG
GAAATTTTCTTTGCATTAAGGAGTAAGAGAAACAGTCGTATGTACCGAAA
GAAATAGTACATGAAAAATTTTGTTACGATGTTAGCAAAATTTCTTTCGT
GACGTCAAAAGGAAGAACATTGGAAcctaaaatatatattatagtGATGT
TGGAGTGATGTACAAAAACTAACTTTCGAGATCGAGTATTGGATGGCTGT
TATACAGTTTTGACACAATTTATACTGTCATGTCAGTCAAATTTTTATAC
GACATTATTCGACATATTTGTGACAGGagcaaaattttatatttttgctt
AGAAAACACTCTTCATTAGCCTGCTGACCTCGTTTTAACTTATTGGTAAA
CAATGACGAAAAGGTCGCTCAATCTTCTGTAGCGATTATCCTATGTTTTG
AAGGAGACCACCCGAGGTACGACTTAGTGCTTTCTAGCAAAAAACGCACA
ATCGTACACTCATTTTACACACTTACCCTGGACTATGGcgacaaaacttt
tttgattcgAGTTTCTCAGTTCTTAGTCCACTTTAAAATATGACTTTACA
CATGCACAAATTCGTCGGCAAAAATGGGCGAAAATAGGCTAATAATTTAG
CCTGTGATGAAATTCGCAAATAAGTAGCTACTGTATTCCCAAAAGGCATT
TCAAGAAGAATATTATCTCCTATAATATAAAAGGAAAGAAGggttttaaa
aaattataaatgttATCATtacaggggggggtcggtagtaaaatctcaga
cataatgacgtttactacgttggtggtgtgacaaaaaatcgaaaaaactt
tttactacccagggtagttaaatactaaaatgggtggtatctatgtgtta
aattttgaaaaatt
Run BLAST on NCBI

transcript from alignment at sc0000005:994329..1004956-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000844 ID=TCONS_00000844|Name=TCONS_00000844|organism=Clytia hemisphaerica|type=transcript|length=10628bp|location=Sequence derived from alignment at sc0000005:994329..1004956- (Clytia hemisphaerica)
CAACGAACCTAGAAGTACAAGATGCTCCTGCCTTTGACTTCAATAAGGTA
AACTAAAGGTTTTTATTATTTCCTTTTTCTAATGGAAGGAGAGACCGGAA
TCTTTTCCTCATCCAGCAGCAAATAATGTGACATGCAGTGCAGAAGTAGT
GATCAGCTGTTGCACAGCAAAAAGCTACCATTTTGTTAGATTTTAACAGG
GTTGAGACGACAAAAATCGAGACCAGAATATTATCAAGATAGGCGGCCAC
TTAAGATTTCAGACGGCCGCCTGACCTTGACCGCACATCCCAGACAGGGA
CAGGGTTGGCTATATCAGCCACGGTACAACATCTTATTGCGAATAGACGA
CTATAATCGTGGTTTGATTTTTAGTTATAAGAAAACACCACGTGAGCAAT
TTTCCATCAGAATGTTACGAGAAAACTTTTAATTTAATTTTTAAATTACA
GCTTCAAAGCCCACTATTGTGAAATTGAGCAATCCAGAGACATCGATTGG
ACAACGTGACCATCTCTCGGACACCGATAAGGAACAACTCAACCTGCTGT
ACAGTTGCACAAGTAAGTGAAGAAAATTCTATGTTTAATCGAAGTTATAG
GTGGATAAGCATAATGTACCCCTGTGTCATAGACCTCGTGGAAAAATTAG
ACTAAATTTCACCCCTACGGAACCAACTGGAAAATTGACTTTGACTTTAT
TCCCATTTGAAATTCAATCGGAAAAATTACACTCCGACATCATCCTAACT
GAATTCTTTGAGCTGGAAATTAGACTAGCGAGAATTAACTGTATTTACTC
AACTTCACACATCCCCGTTATTATTCCTGCCACCGAATAAATACTGTCAC
AATAGCAGGTTTTTTAGTCTGTAGATAAAGGATAGTACTCAGAAATTACA
AGTTATAGATCAAGATATGTTATAAGATAGACTGGTACTTAACCAACAGA
CGGTTCTGGATTAAGATCCGTTTGTAACCCACATTGTTTACAAAAAGTGA
ATCTTTAAACACGCCCTTGGCTCTTTCATTCTTAACGCTCGATTTTCTAT
GTTTTCAACAGGTAAAGACAAACAAGGATGGAGTAATTGGTCAGAATACG
GTCCATGTACCAAAGAAGGTCGACGTGAACGATCGCGTTTCTGTATGCAC
CCTACTGATAAAACAAGCTGTCCCAACCCAACAAACACCATGTATTTACA
CTACGGTGTTGATACTGAGGTTCAAACTGGATGCGCTTATTATCGTGAGT
TTTTTAACATGGTTTAATACCCTTTCGAGGATTGGATTTGGTTTGAGTTC
CAGAAAAAAAATTTCAACTTTTCTCGATGAAAATAACTTTCAGTTCCACC
GATCTTCCGCCTAAGATAAGGTTGTCATATCCAAATTTATCTGCAATGTT
TTAATTTTGTGTTAATGTATCAACCGTTTGAAGTGTTCTAGAGGTAACTT
AACGGTTGGTACTCAAACATTTGTTTGAAATCTTTTACATAATTGTATAA
TTCCCTTCTGAGATAAATTATAAAATTATAGGATTAAGAAAAGATATGTG
TTTCTTTCAGAGGATGGTCATTGGGGTCGATGGAGCAGCTGGGGATCATG
TTCAGTGACTTGCGCTATTGGCACCAAATCACGTACTCGAAAATGTGACG
ACCCAGCACCATCAACTAATGGTGCACCATGTAAAGGACTTTCAGTGCAA
AGTGCAAGCTGTGAAATGATCAGTTGTGATGCAGGTTTGTGCAGCTCTCT
TTTGTGGATTATTTTTTTAACCAAAACTTACTCAAAATTCAGTATCTTGT
TCTTAAGTATTATTTAAAAAAACCTAAACTGATTCCTTATCCATAGCACC
ACTGGTGTGGAAACCATAATGGTACCAGTCAATGTCATGGACCTATAGAT
TAAATTATGAAATTTGTTGAATATGTTTTAATCCTAGACTTACATTATGT
CAACCCTTTTATAAAAACAAAGGAAATTTTCGGTTTTTGCTCACTTTGGG
CATGATGAGTGACGTCATCATAAGAATGTTTTGCCAAAGGTTACCTTATA
TGACAAGGATCTTGTGTGCCAAATTTCATCCAAAAATACCCACTAGATCA
AAAGTTAAGAGGTGGTACAAGAACAGCCCTCCCTAGTTTTGAACCGCCTC
TAAAAGCCTAGTAGGAATATCAAGTAGTGAAGTCAAGCTAAACGTGAGGT
ATTTTAATGTCTACTTAAAGGACCATACGATTGTACATTTGAAGCGGAAA
CCACGCCAACATGTAAATGGACCAAAGATTTGAACGCTGATTTTCAATGG
CGACGACACACTGGAAGTACACCCTCATCCAGCACCGGTCCCTCTGGTGA
TCATACTTCAGGAACTGGTAAGTGGTTTGTATTCATGTGGGTTTACCACA
GATGTCCGTCTAGGATAGAACGTAGTATCTCTTAGAAAACTCAAAGAACT
TAAAGAACTTATTATAATTATGATTATCGATTGAATAGAGATTTGCTCCT
TAAATAATGCCAAATGGCTTGAGAGGAGCAAGTTTAGCTTTTTATCCACG
GCGATCTGTAACTGGAATAATCGGATTCAAAACTTTTGGGTTTTGCCAAA
TTTTGAAAAAATGGCTTAGAATAAATACTTCCTTTTTCTTTTATCCTTTG
AAGAGCTTAAAAGAGCACATTCTCTCAAAATTTCAAGTTCTATCTTCTTC
TTTTGACTTTTTATAAGGTGACTTTGTGTGCAAAATTTCATCTCCATAAT
ATGGACACCAATTTTGGAGATACAAAGGAAACTAGCCGAAAAAATCCCGA
TTTTTTTAAAGTTCCACTGGAAGATCACCGTGATCAATCGAGACAGAAAA
AACTCTCGCGTGTTCTGTAAAGGCTATTCAAAAAACATTTTATTAGCATG
GCAAACTTGAAATTTCTCCACTTAATCTTTTAGGTTACTATATGTACATC
GAATCATCATCTCCTGCGATGGTTGGATATAAAGCTCGTTTGGTGAGTCC
ACAAATAAAGGCTGGTGTTCACTGCTTGGCTTTCTGGTATAACATGTATG
GATTCTCTACTGGTAGGCTGATAAGATTTTTTACTTATAATAAACAAAAT
CTTCATGAAAAAGCTTTACCAGTCAGGAGGAGAGGCTAGTTTTTGAAGAA
ACCATAAATCATCCTGATAGTTTAAGGTCTGGAAGGTGGCGCTTGAAACA
TTGTAAATCCCGGTAGATCTTTCGTTCGTGATATAGAGATTTTTCGGGTC
TCGAGAGAGTTATGTATCTGGCATCAGTGGCGGCCTGGCAGGGGGTGCAG
GGTGTGCAGTGCACCACCCAGAAAGATCTGAGAGGGGCGCCAAAAGAGCT
TTTCAAGGGGGCGCCAAAATTTTGTTCATGTTTAATTGGGCAATCTGGCG
CCCTTCGACTCGTTTATAGCGCCTTCTATGAGTACACTGTTAATTTTTTT
CGTCTGCGGCGCTTTATTTTACCCTTTTACATCCTTTCTCTTGAATTTTT
TCAAAACTTGTATCAATATTGAATCAGAAGTAAGAGAAGTGTTGTGTATC
CACCAAGGGTTAAAGAGAATGCTTACCCCCAAAATGAGAGATTGCCAAAA
TGATCAAAACTTATTAATTCTCGTTGTGGTTTTATGTGGTTCTGACTAAC
TTTCTCCGTTTTAGTAGATCTTTTAGGCTGTTTGACCTTTCTTACATCAA
ATTTTTTTGCCTGCGGCGCCAAAAATATAAGGAACCCTTCCACACAACTT
CTGAATTTTTAGAGCCTCTTTCAGCCATTGATCTTTAATGGAGAGTAGAG
TTAGACCATCTCACGTTACAAAGATAATCCAATTGTCTCCAGTCCAAGAG
AAAGTAGTCGTGTTTAATGTTTGGAATTTTGTGTACTGATAAGGAGAAAA
AGTTAAGATAGTTTAATATTTTCACTTAATGATGGAGGGCGCAAATAAGG
ACAAAAATACCAGGGGCGCCAATTTCATAGTTTGCACCACCGAGAAATTT
AAGCCAGGCCGCTACTGTCTGGCATTATAGAACACTTCCGGCCTTCGTCA
CAATGTTTGAACTCCAAGAACCTCATTTTGAGTTTCCCTATAGTAATGGT
TTAAGTTTTCATTGATTTCTCGTTTTTTTAGGATCACTGAATGTTTATTT
GGAAGGAAGCCAAGAACAACTTTTCACTTTGAGTGGTGACCAACTTAAAG
ATTGGCATTTGAAGAGATTGAAGATTGACAGCGCTGGAGAATTCAAGGTA
GCTTTTTCCCTTATAAATTGCCCTATTAATGTGCCTTTGAGTTCTTGGAT
TTTTTTCTAAAAAACCTTCAACTGTCAATGATAATTTCTCTTCGCCATGG
TTGAAGTACTTCCTTCCTATGATGTCAATCCTCGACTTCTGTATTGTATT
TTTGTCGCTTTACCTTGTAAATATCAGTACAATATTGTTTATTTATCTGT
TCATAGATTGTCATCGAAGCAGTTCGTGGCAGCAGTTTCCAAGGGGATAT
CGCTATTGATGATATCAAGGTTAAAGATGGTCCATGTTTTGGTAAGTTTG
ATGCTAAGTCTAGAATCTTATAGAGTTAGTAATCTCTAAATTTTGGATTT
ATGTCCTATTAGCTCAGTGCTTGGGAAAAGAAATATGGAGAAACAATATT
GTTTTTTGATTTGTTTAGCCCCACCAACCCCTCTTCCAACAACCACCGAA
GAAACCACCACCACTGATCCGCCAACAACCACCACAGAGCCGCCCACCAC
CACAGAGCCGCCCACCACCGCAACTAGCACTACAACTCCACTGCCAACAA
CAACCACTACTGAACTAACTACTACTCCAGAACCTCACATCCCCGAAGGT
AATTTTTTTGCCCCCGCAGGAGCGCAGCGACAAGGAGGCACTCATAGTTT
CACGCATAGATATTAGACTGGAATCTCGAAATTTTGTTGTTTTTGTTGTT
TGTGTTTTGTCGCGCAAGCATCCCTGTAGTTAGTCTCTTCCGTAAATGTT
CGGTTTTTTTTTCGGGACAGTAGTATGCATATTTTCATATTGCGTTATAT
GCTATTACCATTGTTACATATTACAATTTATTAGTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAATGTTGAA
TGTATGCATATGGCCATATGTAAAGTTGAATCCAAAAGTGGTTGAATGAA
TGTTGAATGTCAATCAATGTAAACAAACTTTTTCTTTTGGTCTGCAAAAT
AGATTTACCTCACTTAGAGTGTATTCACTGTTTTTTCAGTGTGGTAAAAT
CTATTTCAAAAACCTGAAAAAAGTTTGTTAGCATTCGTTCAACTTTACAT
GCGCATATTCAATTTTTTCTAAATAACTTACACTCCAGTGGTTTGGTGAA
ATAGCTCCAATTCTGTTAGGAGGGACCTTCCCAAAGGCATTTAACGGTGG
TTAGAATAGATACACAGACATTCATACGGAAACACAATAAGGTGAAAGTA
TATACTGTAGCTAACTCAAAAAGTCTAGCTTGCTGAAGGCACGTGGGGCA
CGTCTCTTCATTGCCTGCGCTGCGATCATCTTAATGGCTTCGATCCTTTC
AGCTTGGAGAAAAGATCGCATCATGAAAAAGTACTATGCACTTGAAAAAA
AATTAAAGCGCATTTCAACTTTTCAACACAATGACATTCCTTTATTTTTC
TTTTGACCAACAACATAGAAGATTTTGCTTGAAAAGTGCAATCACAGCGT
ACACAAGAGGAGCCCGGGCCTTAACTAGGATTGGTTTCTATTTCACCCAA
TTTAAGATGGCGCAGAACTTTTTGATAAATTTTATACGCAGTATTCTCTT
GGCTATTGTTTATTAGGCAAAGTAGCAATAGAGAGTTGTTGAAATATAGC
AGCCAATGAAAAAAGCAAGCTATTTCTGATTGGTTGCCTTGTTGATTTAT
TCACCGCTATATATTTTGCCTACAATCTAAGATGTCTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAT
GAATTCTTCAAGTATTGTGTTAATGGAATATAATTTTTTTTTCAAGCATA
TGCCTCAATCAATTAATCAATCATTCAATAATTAAATCAATCAATTATTA
ATAATCAATTTTTAATGCTTTAATTTTTAAAGCATTAAAAGCTTTATAAG
TGCATGACATGATCTTCTGCGTGGGCATTTAGTGAAAGCTATGACTAGTC
TTATTTGTAAGACCATTTTTTGATCAAAATTTTGTTAACAACAAAGATTA
ACACACCCCTTTCTCTCACAGAGAACCCACTGGGAACCTTTCTCACTGGA
AATTCGTCAAAATATCGTCCCAGTGGAAAATTATACTCTAATTTTTGTCC
CCGCTAAAAATAATCAGATAAAGCCATCAATCCTCACTGCAATTTATCGT
GCTTTTTTTCCATCCCCATCGAATTTTCTGGCTCGAGAACAATGGAATTC
AAATCCCCAGTCATAAGCAAACATGGGAATATCGACCCCATCGACTTTTG
GACCGCTATTTTTACCCTCGCTAGCTAAAAAAATCCCACCGGGTCCATGA
GAAGGGGGTGTATTATCAAAGCTAGCCTTTTTCCGATAAAAGCCGCTAAC
CGTACACTCTTTATTTTTTTTCAGCTGTACCCGTTGGATGTTACAAAGAT
TTCGGTTACATTGATAGCAAACGTCCATTCAGCAAATACAAAGATTTGAG
CAGCATTGTCATCTGGTCTGCCGATGTGGAATTCGCAAAAAACAATTTTA
AAGATGTCGTCGGAAACTGTTCAGCCTACGCAAGAGCTAATGGCTATCAG
GTAAAATCTTATTGAAAACTGATTTTTCATTGGGCGCATTAATTCGAAAA
ACTTAACCCATAGATACATGAAAAGTTTTATCGGAACAATCACGTTACTT
ACAATGTGTATAAAGATTCGATTGGATGAATATTTATCTGACTGAGTGTA
TTGAAACTAAACTAAACTGGGTTTGACTCTCTATAATAGATTGCACCTTC
TTTTATTTTCAGCATTTTGCCATCCAGTATTACTACGAATGTTGGACTGG
ATCCAACGAAGACATCAATTATGGACGGGACGGTGAGAGTGTGGGTTGTT
GGCCACAAGTTGATCAAAATGCTGGCCCATTTTTGATTGGTCAAGATTAT
TCGAATATGGTCTATAGATGGGAAGATTAAAATATGACCAAATTTCTAAA
AAATTATCATTTGAAAGATTTTGAATTGGTTTTCATCGAAAGAATATGAA
TTCTCAATCGCCTCTACTTTTAAATTTGCTGATTTACTGAATCTTTGAAT
AAAATACATAATTATAGCGGAAATCTAATTTAGCGGATGGTCAAATAAGT
TAGAAATTTAATTTGGCGGATGACGGAAAGAATCTAAATTTGCCAGGAAT
TCAATTTGGTAGGTGAAGGATATTTTTGACCAAAAAAACGCTATTTAATA
AGATAAAACCTGTCTTAAGGCCTGAAATAGCACAATTTAGGGGAATGAAT
ATAATAATTTAAATTTTGTAGGAATCTAATTTGGCGGATGATGGGAAAAA
ATAAATTTGGCGGGAAACTTAATTTTTGGTAGATTTCTGCTAAATCCGCC
AAATTAAAGTCGCCAAAATTTCTTCCTTACTTTTAAGGTAATTTAATACC
GAAAAATCTTTTTTTATCAAATTGTATTATATCTAAGTCAACAATTGCTG
TATGACTGTATCATAATGGCGGGGTAAAACTGACCCCTTCTTTTGTCTAC
GGCTACCTTTTATGGTTTTCTTCTTTGATAAATAAGAACGTTCCGTGTCG
TGTCTCTTGCTGAGCTTGGGTCTTACATATTAAGATTTTATGATTTTTTG
TTTCAATTCTTTTCAATTCTGATCCAAAAATACTTTTGAAATCGGAAATA
ATGTCACAATAAATAATTGAAATAATATTTTCTGATAAGTGACAAAATAT
GGAATAATTTCAAGTGGACGAATGGTTTCATGGTTTCATGGTATCAAAGA
CTTTGTTACTTAGCGGTCGTTCTTTGTTTATTTATTTATTTATCCACTGT
ATATCTATATTTTTGAATTTTAGGATTCACTGGAACTATGGGAATTATGA
CTAACAGTAGTTAAAACTTGTATCTATGGTTAAATTTCATTCAGATCATT
TCACCGTAAAAATTCTGAATGAATTGACAAAATTTCGAATCGGGTTATAA
ATAATTAAACGAATACAAAAAGATAAGTATGATTATGTTTTGAATCGAGA
AAAAAATCCTACTGAAAATTTTGTGTGAAGGATAAAAAAGTCGAAAATAT
ATACTACAGTCTAATTAAGGATAAAAGATGTGTTTTTGTTGTCATCCACA
AAGGCATTATAAACTTCAACTTGAAGTGATCAACGAATACAGTAAGATCG
AACGACAGCCTTACATTATCGACGTTGAACCAGAAGAGCGCAATGTCTGT
TGTTGTTTATGTGATGCTGGTGTCAACAGTCTTCATTTGAATAACCAGCC
AACCGACCAAGTGATTTACGATAATGTGTGCTTCCCGCTTTGTTGTAAAG
GAGGTGATTTCGAATGGCAGGATCGTGGTCATTATTTCCGACTCGAAATG
CCGTCGTTGTATATTCACGACGGTTTATATGTTGACGGCAAAGAGATCAA
TAGCCGACGCTATAATCACACAGAATGGAAATGTCAATTCGCTGTTTGGT
TGTTGATCGGGTTTTTGGTTCTGGCGGCCGGTGTAGCGTTTATTGTTCTG
CATTTTTTGGATTGCTGTTGGGGTGGTTTCTTGTATTTGGGTATCTCATG
TGTTCTAACGAGTGTCTTTTCACTATTGGTGGGTTGTATCGGATGTTGCC
GTATCTCAAAGCTAGTCAGCCGTTACCGTGCTAACCAACGCGCCCAAGCA
AAGGTTGCAAATGACAATTTCACACGAATTTAATGTCGATGAATGGGTTT
TATATATGAAAAGGGAAATTTTCTTTGCATTAAGGAGTAAGAGAAACAGT
CGTATGTACCGAAAGAAATAGTACATGAAAAATTTTGTTACGATGTTAGC
AAAATTTCTTTCGTGACGTCAAAAGGAAGAACATTGGAACCTAAAATATA
TATTATAGTGATGTTGGAGTGATGTACAAAAACTAACTTTCGAGATCGAG
TATTGGATGGCTGTTATACAGTTTTGACACAATTTATACTGTCATGTCAG
TCAAATTTTTATACGACATTATTCGACATATTTGTGACAGGAGCAAAATT
TTATATTTTTGCTTAGAAAACACTCTTCATTAGCCTGCTGACCTCGTTTT
AACTTATTGGTAAACAATGACGAAAAGGTCGCTCAATCTTCTGTAGCGAT
TATCCTATGTTTTGAAGGAGACCACCCGAGGTACGACTTAGTGCTTTCTA
GCAAAAAACGCACAATCGTACACTCATTTTACACACTTACCCTGGACTAT
GGCGACAAAACTTTTTTGATTCGAGTTTCTCAGTTCTTAGTCCACTTTAA
AATATGACTTTACACATGCACAAATTCGTCGGCAAAAATGGGCGAAAATA
GGCTAATAATTTAGCCTGTGATGAAATTCGCAAATAAGTAGCTACTGTAT
TCCCAAAAGGCATTTCAAGAAGAATATTATCTCCTATAATATAAAAGGAA
AGAAGGGTTTTAAAAAATTATAAATGTTATCATTACAGGGGGGGGTCGGT
AGTAAAATCTCAGACATAATGACGTTTACTACGTTGGTGGTGTGACAAAA
AATCGAAAAAACTTTTTACTACCCAGGGTAGTTAAATACTAAAATGGGTG
GTATCTATGTGTTAAATTTTGAAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000508XLOC_000508Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000844-exon-sc0000005-1575043694:1004910..1004956TCONS_00000844-exon-sc0000005-1575043694:1004910..1004956Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:1004395..1004505TCONS_00000844-exon-sc0000005-1575043694:1004395..1004505Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:1003713..1003895TCONS_00000844-exon-sc0000005-1575043694:1003713..1003895Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:1003223..1003396TCONS_00000844-exon-sc0000005-1575043694:1003223..1003396Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:1002590..1002736TCONS_00000844-exon-sc0000005-1575043694:1002590..1002736Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:1001895..1002023TCONS_00000844-exon-sc0000005-1575043694:1001895..1002023Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:1000710..1000825TCONS_00000844-exon-sc0000005-1575043694:1000710..1000825Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:1000416..1000500TCONS_00000844-exon-sc0000005-1575043694:1000416..1000500Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:1000109..1000288TCONS_00000844-exon-sc0000005-1575043694:1000109..1000288Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:997357..997532TCONS_00000844-exon-sc0000005-1575043694:997357..997532Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1575043694:994329..997144TCONS_00000844-exon-sc0000005-1575043694:994329..997144Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:1004910..1004956TCONS_00000844-exon-sc0000005-1510915933:1004910..1004956Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:1004395..1004505TCONS_00000844-exon-sc0000005-1510915933:1004395..1004505Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:1003713..1003895TCONS_00000844-exon-sc0000005-1510915933:1003713..1003895Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:1003223..1003396TCONS_00000844-exon-sc0000005-1510915933:1003223..1003396Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:1002590..1002736TCONS_00000844-exon-sc0000005-1510915933:1002590..1002736Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:1001895..1002023TCONS_00000844-exon-sc0000005-1510915933:1001895..1002023Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:1000710..1000825TCONS_00000844-exon-sc0000005-1510915933:1000710..1000825Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:1000416..1000500TCONS_00000844-exon-sc0000005-1510915933:1000416..1000500Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:1000109..1000288TCONS_00000844-exon-sc0000005-1510915933:1000109..1000288Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:997357..997532TCONS_00000844-exon-sc0000005-1510915933:997357..997532Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1510915933:994329..997144TCONS_00000844-exon-sc0000005-1510915933:994329..997144Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:1004910..1004956TCONS_00000844-exon-sc0000005-1491911889:1004910..1004956Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:1004395..1004505TCONS_00000844-exon-sc0000005-1491911889:1004395..1004505Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:1003713..1003895TCONS_00000844-exon-sc0000005-1491911889:1003713..1003895Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:1003223..1003396TCONS_00000844-exon-sc0000005-1491911889:1003223..1003396Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:1002590..1002736TCONS_00000844-exon-sc0000005-1491911889:1002590..1002736Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:1001895..1002023TCONS_00000844-exon-sc0000005-1491911889:1001895..1002023Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:1000710..1000825TCONS_00000844-exon-sc0000005-1491911889:1000710..1000825Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:1000416..1000500TCONS_00000844-exon-sc0000005-1491911889:1000416..1000500Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:1000109..1000288TCONS_00000844-exon-sc0000005-1491911889:1000109..1000288Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:997357..997532TCONS_00000844-exon-sc0000005-1491911889:997357..997532Clytia hemisphaericaexon
TCONS_00000844-exon-sc0000005-1491911889:994329..997144TCONS_00000844-exon-sc0000005-1491911889:994329..997144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:994329..1004956 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.419369	0.341871	0.0416595	0.112043	0	0	0.0617863	0	0	0	0	0	0.202129	0.235969	0	0
Blast
[Close]
BLAST of TCONS_00000844 vs. Swiss-Prot (Human)
Match: MDGA1 (MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Homo sapiens GN=MDGA1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.274e-21
Identity = 61/166 (36.75%), Postives = 90/166 (54.22%), Query Frame = 2 
Query:  527 CTFEAETTPTCKWTKDLNADFQWRRXXXXXXXXXXXXXX-----XXXXXXXYYMYIESSSPAMVGYKARLVSP--QIKAGVHCLAFWYNMYGFSTGSLNVYLEGSQE-----QLFTLSGDQLKDWHLKRLKIDSAGEFKIVIEAVRGSSFQGDIAIDDIKVKDGPC 988
            C FE E    C +T+DL  +F W R    T +    P+         +  GYYM+IE+S P  +G +ARLVSP     A  +C++F+Y+MYG   GSLN+ +    +       ++LSG++   W    + I  +G F+I+ E VRG  + GDIAIDD+ +K G C
Sbjct:  753 CHFEDEKI--CGYTQDLTDNFDWTRQNALTQNPKRSPNTGPPTDISGTPEGYYMFIETSRPRELGDRARLVSPLYNASAKFYCVSFFYHMYGKHIGSLNLLVRSRNKGALDTHAWSLSGNKGNVWQQAHVPISPSGPFQIIFEGVRGPGYLGDIAIDDVTLKKGEC 916
The following BLAST results are available for this feature:
BLAST of TCONS_00000844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDGA13.274e-2136.75MAM domain-containing glycosylphosphatidylinositol... [more]
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