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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000842 ID=TCONS_00000842|Name=TCONS_00000842|organism=Clytia hemisphaerica|type=transcript|length=1154bp
CCTTGAAGCATGagagttctttcattttctccAGAAGTTGGTTTAAATGT
CTTCTTCAAGTGTCCCTGTCTCCTGGATGCAGTTGGCATTTCATTGAAAG
CCAGTTGCGAATAAAGCGACACATCTTCGTCCACAAAACTAAAATCATCG
AGAACGTCAATCAAAACATACAAAGCCGATGACGCCCATCCTTCACTCGG
TTCCGTAAAATTCTccaatttaaaaacaatcaaatcgTCAGGCTGAATAA
TGAATGTTTTGTTCAATATCTCATCATTCTCAGCAAGCGGTGTTTCAATA
ACATTTTCTATAGGAATCCCAATGTCGACTTCAACATTACGTAATTTCAG
CTTTTCATTTTTGTCATCAGCGAAAGTTAAAGAAGTGACTGAAGTTTGGC
CTTCAATTTGAGAGTATGGATTAAGAGAAGAACACTCAGCGACTTCTATA
AGGTCAGCCATGTTTTTCAAGTCGTAAGAGACAGTACAAGAGCCAACTTG
GCGTGATCCTTGGACTGTTGCTCCACCGTTAAGACGTTGTAACGCTGTTT
TGATGTACGGTGTATCAAGTAACCTTGCCTTTTCACCAATGATTGTAGTA
TTTAGAATCAAGAAATACAACTGGTCTAACAAatcaagattttcattttc
aaattgcGTTGGATTTTCAACTTCATTCAGGGTAACTGTGTCACGTAGAT
GTCTTTCGGTTTTCCCAGCGAGCAGGCCGTAAGCAATATTACTACTGACA
AGATCCATGAATGCATTTTGTGATTTGGATTCAAGACTGATAAGTTGAGC
AGCAAATGATTTTGATAAGTTCATCATTTTGTAGAGAGAATTTTGAATAG
TTTTCCGGCTATCAATTTCAATATCGTTAGGTTTGCTTGATTTTTGAACT
GCATGAAAAGCATCTAAAACTTGCGCAATGTTTTCAATAGAAGTTGCGTC
GACTTTTGAAGCACCATCAATCAGTTGTTTCAAAATATCGCTTTTAGATT
CTTTCGAATTTGCAAGGATCTTACTGGACGAGACAACTAATGACGTCACT
TTGTGCAGATTTTTCTCTTTTGCCAGTTTTTGTAAAGTTGGTATCACTGA
TTTCTGAATGAACAAACTGGGCTTCATCTTTGGTGGTACTACTCGAACGG
ttct Run BLAST on NCBI transcript from alignment at sc0000005:979633..982033- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000842 ID=TCONS_00000842|Name=TCONS_00000842|organism=Clytia hemisphaerica|type=transcript|length=2401bp|location=Sequence derived from alignment at sc0000005:979633..982033- (Clytia hemisphaerica)
CCTTGAAGCATGAGAGTTCTTTCATTTTCTCCAGAAGTTGGTTTAAATGT
CTTCTTCAAGTGTCCCTGTCTCCTGGATGCAGTTGGCATTTCATTGAAAG
CCAGTTGCGAATAAAGCGACACATCTTCGTCCACAAAACTAAAATCATCG
AGAACGTCAATCAAAACATACAAAGCCGATGACGCCCATCCTTCACTCGG
TTCCGTAAAATTCTCCAATTTAAAAACAATCAAATCGTCAGGCTGAATAA
TGAATGTTTTGTTCAATATCTCATCATTCTCAGCAAGCGGTGTTTCAATA
ACATTTTCTATAGGAATCCCAATGTCGACTTCAACATTACGTAATTTCAG
CTTTTCATTTTTGTCATCAGCGAAAGTTAAAGAAGTGACTGAAGTTTGGC
CTTCAATTTGAGAGTATGGATTAAGAGAAGAACACTCAGCGACTTCTATA
AGGTCATCCATGTTTTTCAAGTCGTAAGAGACAGTACAAGAGCCAACTTG
GCGTGATCCTTTGACTGTTGCTCCACCGTTAAGACGTTGTAGCGCTGTTT
TGATGTATGGTGTATCAAGTAACCTTGCCTTTTCACCAATGATTGTAGTA
TTTAGAATCAAGAAATACAACTGGTCTAACAGATCGAGATTTTCATTTTC
AAATTGCGTTGGATATTCAACTTCATTCAGGGTCACTCTGTCACGTAGAT
GTCTTTCGGTTTTCCCGCCGAGCAGGCCGTAAGCAATATTACTACTGACA
AGATCCATGAATGCATTTTGTGATTTGGATTCAAGACTGATAAGTTGAGC
AGCAAATGATTTTGATAAGTTCATCATTTTATAGAGAGAATTTTGAATAG
TTTTCCGGCTATCAATTTCAATATCGCTAGGCTTGCTNTTTTCACCAAAA
TTCAGTCTCTCTAAGGGTAAGGGTCCAGAGGTCTGGCACGCACATACCCG
ACACCCGTCAATCCTAGTACCCCCCCCGGGGTCTATATATTCTCTAACTT
TGGTTCAGACATACAAGTCATCTCGCAAACCCATTGTCTCAACCCCGGGT
CTATACTAGGACATAACTACACGAGGAAAGCACATAAAATATGATAAGTT
CAAAAAGAAGATTATATAGGGTAAGCAAGTATCAAAGAAAAAACATATTT
AAAGCGTACTTATTTAAAGCGATTGTATATACACCAAGTGAATCTTGAAC
CCAAATTTGAACAGGTAGAGTGTAATCATCTCCGTCTCCTACTGGTAAAA
GCTCTTGTATTTGTGTCTGAATCCCTCTGAAGAAGTTGGTCTCTTCTTCT
CCCACCACCAACCAGTAGAGGAGAGGTTGTTCTTTATTGTCCTCGTCAGT
CCATCCTTTACATGACATTTCGAATGATGTTGTTAAAGCTTCACCTTGGT
CAGGTGTGAAAGTACATTCACCTCCGGATGGGCTCTTGTTCTTTTGAAGT
TCAAGAATTGTTGAACCGACGGCATTCCATCCTGGCAAGATTAGGAAAAG
GGATACAGATACCGTTTTGATAAGACGACGTTAATTTGCATATATCATAT
CGTGAAAATATATATATTATATCGAATTTTAATGAGAAATAGTAAAATTA
GGCTTATTCTGTCATGATTTTCAATCTAAAATGTTCTGATATTGTTCTTA
ACATGCTCACTTTTATTCCAAAACAGCATTCACATCCTAANTCTATAAGG
TCAGCCATGTTTTTCAAGTCGTAAGAGACAGTACAAGAGCCAACTTGGCG
TGATCCTTGGACTGTTGCTCCACCGTTAAGACGTTGTAACGCTGTTTTGA
TGTACGGTGTATCAAGTAACCTTGCCTTTTCACCAATGATTGTAGTATTT
AGAATCAAGAAATACAACTGGTCTAACAAATCAAGATTTTCATTTTCAAA
TTGCGTTGGATTTTCAACTTCATTCAGGGTAACTGTGTCACGTAGATGTC
TTTCGGTTTTCCCAGCGAGCAGGCCGTAAGCAATATTACTACTGACAAGA
TCCATGAATGCATTTTGTGATTTGGATTCAAGACTGATAAGTTGAGCAGC
AAATGATTTTGATAAGTTCATCATTTTGTAGAGAGAATTTTGAATAGTTT
TCCGGCTATCAATTTCAATATCGTTAGGTTTGCTTGATTTTTGAACTGCA
TGAAAAGCATCTAAAACTTGCGCAATGTTTTCAATAGAAGTTGCGTCGAC
TTTTGAAGCACCATCAATCAGTTGTTTCAAAATATCGCTTTTAGATTCTT
TCGAATTTGCAAGGATCTTACTGGACGAGACAACTAATGACGTCACTTTG
TGCAGATTTTTCTCTTTTGCCAGTTTTTGTAAAGTTGGTATCACTGATTT
CTGAATGAACAAACTGGGCTTCATCTTTGGTGGTACTACTCGAACGGTTC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000842-exon-sc0000005-1575043694:981582..982033 | TCONS_00000842-exon-sc0000005-1575043694:981582..982033 | Clytia hemisphaerica | exon |
| TCONS_00000842-exon-sc0000005-1575043694:979633..980334 | TCONS_00000842-exon-sc0000005-1575043694:979633..980334 | Clytia hemisphaerica | exon |
| TCONS_00000842-exon-sc0000005-1510915933:981582..982033 | TCONS_00000842-exon-sc0000005-1510915933:981582..982033 | Clytia hemisphaerica | exon |
| TCONS_00000842-exon-sc0000005-1510915933:979633..980334 | TCONS_00000842-exon-sc0000005-1510915933:979633..980334 | Clytia hemisphaerica | exon |
| TCONS_00000842-exon-sc0000005-1491911889:981582..982033 | TCONS_00000842-exon-sc0000005-1491911889:981582..982033 | Clytia hemisphaerica | exon |
| TCONS_00000842-exon-sc0000005-1491911889:979633..980334 | TCONS_00000842-exon-sc0000005-1491911889:979633..980334 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:979633..982033 - |
Blast
The following BLAST results are available for this feature:
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