TCONS_00000841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000841
Unique NameTCONS_00000841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000841 ID=TCONS_00000841|Name=TCONS_00000841|organism=Clytia hemisphaerica|type=transcript|length=1487bp
GATGTTTTCTCCACACGGGATTGTCCGATGCGTTTTACTTCGACTTCATG
CCAATACCCATCCCTTTTATTCAAACTCGGTGATAAACACTGCGGTTTGA
TTCGTAGCTTCCCATGTTCCGGACTCCATTCATTGACCGGAATAGACGAG
TTCCGTAGATTGACATAACAATGTTGATCAGAAACATTCCATTTATATGT
TATATCACCAACGGTACCAAAATTAGCGTCCGGATCTATGGTACCGGTTG
CATCTAAATAAGCCTCATTCTCGTCTCCGATGACACGGAAAGAGCCACCG
GAGATAACCGGAACTAAGGGCGAATATGTGACAGTTAAATAAACATGGTA
ATCGTAGGAAGCTGGAAAGTATTTACCTACAACAACCGTAATGTACATGA
AATATGTTCCAACTTTGAACGCTCTTGGTGGAAGTTCCAACACAGGGCGG
TTATCGATAAATTGCATGCCCTTTAAGAGTTCCGGTTGAATTAATTCCGT
ATCATTACATGTCCGGTGTCCAAGACCTTTACAATGGAACGACCATTTAT
ATTTGACTGGACATTTGGTTGGGATTTCAATTTCACTGTAATACCATTTG
GACATCACGTGATTTCGATACCGCTCGGTGGCGTTTTTCATTACAGAGGG
CGTTATAGTTAAATTATCAAGTTTGCAATGTGAATATCGAATTTGTTCTG
TGATTAGAGGATTTTTCGTGTCTGTTCCAGTACCAATAACGGTGAATAAG
TAAACACCTTCACTGGAATTCTTAGGGAATGGATAAGATAATGTTTTATT
GATACCAATATGTTTAGAAGGCCCTGAACAGTCTTCCGAAATGTCTGATT
TTCGACATATACTCCATCGATAATCCAAACCAGCGTAATAATTAGTGACG
TCAAGCTCGATTAAAATGAAACTATCCTCCTTAGCACGGTGTACGTTGAG
TGTTGAATTTAAAGTGTTTGATGTATTGGGTAAGATAAGTATGGAGCTGA
CAACAGTTTTGGTCATGAAGACTTGATTTTTGTAGATTGATTTTACTTGT
ATCTGATATTCACCAAATTTGAGGTCATCTGGTATTGTGAAGTTAATTGC
TGGTGATTCTCCCAATGTGACATTGTAAAATGATGGATCCAATGGAGAAA
TAAGGTACCAAATGTATTTTGTATTTGGGATAGGGTTCTTGATTGAAGCA
TGAGAGATTTGCCCTTTCTGCACATGTTTTACTGATTCGATGACAAGAGG
TACTTGGTGGAATGGTTCGTAAAACCAATGGACTGTGTTTACACCAGCCA
TGTTTCCAACTTCAATTGTGATATTGTAACATTTGTGTGTAGATTCAGTA
TGGAAGTTGATTGTGCAATATGTTTCGTATGGTTCGATTTCAAATCCGGT
CACATCTTTGTATGGGTTAATGCAATCACTTTGTTTGAATTGCGATATGT
AACAGTTACCATTTTGCCCAGAGAAAGTAACGTTGAA
Run BLAST on NCBI

transcript from alignment at sc0000005:975342..976925-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000841 ID=TCONS_00000841|Name=TCONS_00000841|organism=Clytia hemisphaerica|type=transcript|length=1584bp|location=Sequence derived from alignment at sc0000005:975342..976925- (Clytia hemisphaerica)
GATGTTTTCTCCACACGGGATTGTCCGATGCGTTTTACTTCGACTTCATG
CCAATACCCATCCCTTTTATTCAAACTCGGTGATAAACACTGCGGTTTGA
TTCGTAGCTTCCCATGTTCCGGACTCCATTCATTGACCGGAATAGACGAG
TTCCGTAGATTGACATAACAATGTTGATCAGAAACATTCCATTTATATGT
TATATCACCAACGGTACCAAAATTAGCGTCCGGATCTATGGTACCGGTTG
CATCTAAATAAGCCTCATTCTCGTCTCCGATGACACGGAAAGAGCCACCG
GAGATAACCGGAACTAAGGGCGAATATGTGACAGTTAAATAAACATGGTA
ATCGTAGGAAGCTGGAAAGTATTTACCTACAACAACCGTAATGTACATGA
AATATGTTCCAACTTTGAACGCTCTTGGTGGAAGTTCCAACACAGGGCGG
TTATCGATAAATTGCATGCCCTTTAAGAGTTCCGGTTGAATTAATTCCGT
ATCATTACATGTCCGGTGTCCAAGACCTTTACAATGGAACGACCATTTAT
ATTTGACTGGACATTTGGTTGGGATTTCAATTTCACTGTAATACCATTTG
GACATCACGTGATTTCGATACCGCTCGGTGGCGTTTTTCATTACAGAGGG
CGTTATAGTTAAATTATCAAGTTTGCAATGTGAATATCGAATTTGTTCTG
TGATTAGAGGATTTTTCGTGTCTGTTCCAGTACCAATAACGGTGAATAAG
TAAACACCTTCACTGGAATTCTTAGGGAATGGATAAGATAATGTTTTATT
GATACCAATATGTTTAGAAGGCCCTGAACAGTCTTCCGAAATGTCTGATT
TTCGACATATACTCCATCGATAATCCAAACCAGCGTAATAATTAGTGACG
TCAAGCTCGATTAAAATGAAACTATCCTCCTTAGCACGGTGTACGTTGAG
TGTTGAATTTAAAGTGTTTGATGTATTGGGTAAGATAAGTATGGAGCTGA
CAACAGTTTTGGTCATGAAGACTTGATTTTTGTAGATTGATTTTACTTGT
ATCTGATATTCACCAAATTTGAGGTCATCTGGTATTGTGAAGTTAATTGC
TGGTGATTCTCCCAATGTGACATTGTAAAATGATGGATCCAATGGAGAAA
TAAGGTACCAAATGTATTTTGTATTTGGGATAGGGTTCTTGATTGAAGCA
TGAGAGATTTGCCCTTTCTGCACATGTTTTACTGATTCGATGACAAGAGG
TACTTGGTGGAATGGTTCGTAAAACCAATGGACTGTGTTTACACCAGCCA
TGTTTCCAACTTCAATTGTGATATTGTAACATTTGTGTGTAGATTCAGTA
TGGAAGTTGATTGTGCAATATGTTTCGTATGGTTCGATTTCAAATCCGGT
CACATCTTTGTATGGGTTNATTGTAACATTTGTGTGTAGATTCAGTATGG
AAGTTGATTGTGCAATATGTTTCGTATGGTTCGATTTCAAATCCAGTCAC
ATCTTTGTATGGGTTAATGCAATCACTTTGTTTGAATTGCGATATGTAAC
AGTTACCATTTTGCCCAGAGAAAGTAACGTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000506XLOC_000506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000841-exon-sc0000005-1575043694:975523..976925TCONS_00000841-exon-sc0000005-1575043694:975523..976925Clytia hemisphaericaexon
TCONS_00000841-exon-sc0000005-1575043694:975342..975425TCONS_00000841-exon-sc0000005-1575043694:975342..975425Clytia hemisphaericaexon
TCONS_00000841-exon-sc0000005-1510915933:975523..976925TCONS_00000841-exon-sc0000005-1510915933:975523..976925Clytia hemisphaericaexon
TCONS_00000841-exon-sc0000005-1510915933:975342..975425TCONS_00000841-exon-sc0000005-1510915933:975342..975425Clytia hemisphaericaexon
TCONS_00000841-exon-sc0000005-1491911889:975523..976925TCONS_00000841-exon-sc0000005-1491911889:975523..976925Clytia hemisphaericaexon
TCONS_00000841-exon-sc0000005-1491911889:975342..975425TCONS_00000841-exon-sc0000005-1491911889:975342..975425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:975342..976925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100709	0.0436647	0.0987097	0	1.44084	1.15752	0.609153	0.42896	0.971595	0.908102	0.0295648	0.621985	1.09203	0.479891	0.217369	0.212975	0.291188	0.198062	0.359234	0.167398	0	0.107099	0.079895	0.080861	0	0	0.598142	0	0.0352982	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002859PKD/REJ-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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