TCONS_00000834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000834
Unique NameTCONS_00000834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2066

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000834 ID=TCONS_00000834|Name=TCONS_00000834|organism=Clytia hemisphaerica|type=transcript|length=2066bp
CCGCCGGAggacgcgaacacaacttatttgtGACGGCAGCCCAATTTGAA
GaccaacttcccaagaaaaagatctacggggtaCGGGGGAGACAGAACCC
ACCACTATTTACATTACATGCGTGCATATTTAATTTTACTtgagcgtata
aacaaggcctttcaaataaagattgaagcactgtctcgggaattgaatga
taaaatttggttggttgatattctggctgctGCACATCTGCAATCAATTC
TTGAtcaaacttgattcagTTCGAAGAAACTGAAGTGAAAGTATTTGATT
TGAATCACATTCAAATGGCAGAAACAAAGCAGGGGCTAATCATACTTGCA
CAAAAGATAATAAGCAATGACAAAAGCAATCAGACAGGTGAGATGGTCTA
TCGTGTGCAGTGGTATGACAGTATCATTCCTGAAAGCAATTTGAGAAAGA
TGTTTCCTGATTTACTCAAAGAATATGAGTCAAAACAAAAGGTCAAGCCC
AATCAAAAGGAGGGAGGTGGAACGAAAAGTCATCATAAGGAATCTCAAAA
GCATACTACCTTAATTCCAAGTTCTCCTAAAAAAATTCTCCATAAAACAT
ATTCTCAAGAACTTTCTGCAAAAGAAGtattggcaaaaaaattgattcag
aaacaaaaaaatgcatCTGGAACTGATGCGTTTCATTGTGATTTTTgtga
aaagaaattcaagaCATCAATTGATTTGAAATGTCATATTTATATTCATC
AGTTTGCAAATGATCGAATTAAGGTTACAAAACCTGGAGTAAGAGAGGGC
CCTTCTATAGCCCCAGTTAAGTCGAACAAATCAAAAAGAAAGCCAACAAG
AAAATATACAccattagaaaaaacaaaatgtgaTATATGTGGTAAAGAAG
TAACTTCAAAGAGATTAGAGTCACATAAAATTACttatcatttgaaaaat
ggaaaatttcctTGTTCTGAGTGTGAAAAGCGTTTTCAATGTAACAGGGA
TCTTCAAAGGCATGCAGAAATACACAAAGATGGAAAGCTTGAGAAAACAA
GCTGTGATATTTGTGGTAAAATTTTAACAAAGAGGCATTTGGAGAATCAT
AAGAATCGTTTTCATTCACAAGGGGAATATACTTGCAAGAAGTGTAATAA
AATATTCAAGCATCTTCTTGACCTAGACTGGCATCTCAAGAAACCGTGCA
CTGAAACACCGAATGCTGAGGAAACAAGCACTAGAAAATAGTgtaacaaa
atatccaatagtATAAATGATTGaacatttaattttaattttaattttgt
ttgtaaaattTTGTACATATTTAAGTATATAAGTAACCTTTGTATCAAAG
CCAACTTGAGGGCAGGAAAAGGCCCACTTAttctttccctggatttctcc
acttaccatATCTTAAATTGCTGAAAATTAAGCAGAGAGGCAACCATTTT
ATGAATCTCTTGTATGACCCCCCTTGGGCTTGAACCTACAGCCTTGCACA
CTTTAATTGAATGCTCTTTTGGGCTGTTGTAGTATATCCTTCAATTCAGC
TTTTCGTTCTCTCAGCCCTAACGGATAGTGATGACAATGTAACATAAGAT
TTTTAAACATAGTATTTAttgggggggtttgtacttttacggtgtgacgg
gattggcccttttttagtacggtatcacgggatttgacgaaaaaaagacg
ggaaaacaacggtattttaaaatcagacggtgacggtatttaggtacatt
tttgccctgtacaagccgatgtgacggtgttattattttttcaattttcg
ggattccgggattcagcaaaaaatttgatgggaaaacggtatttcaaaCC
CCTACATAccgcccccccccctttattgaTATAGATTAAAATAGATCACA
TTATTTAGCATATTTTAGGTacatattatttttaatttttgtgcatAGAA
TTAAAACATGATTTTCAGGCATGAAAAAAACTAAGTAAATAAGGCACAGA
ctattttaaactatttttgtaggttttttgttttatttcaaaattcacta
TGAATTAACTTTTAGG
Run BLAST on NCBI

transcript from alignment at sc0000005:769635..774725-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000834 ID=TCONS_00000834|Name=TCONS_00000834|organism=Clytia hemisphaerica|type=transcript|length=5091bp|location=Sequence derived from alignment at sc0000005:769635..774725- (Clytia hemisphaerica)
CCGCCGGAGGACGCGAACACAACTTATTTGTGACGGCAGCCCAATTTGAA
GACCAACTTCCCAAGAAAAAGATCTACGGGGTACGGGGGAGACAGAACCC
ACCACTATTTACATTACATGCGTGCATATTTAATTTTACTTGAGCGTATA
AACAAGGCCTTTCAAATAAAGATTGAAGCACTGTCTCGGGAATTGAATGA
TAAAATTTGGTTGGTTGATATTCTGGCTGCTGCACATCTGCAATCAATTC
TTGATCAAACTTGATTCAGGTAACTCTCATCCTTATAGTTAAAGCCCTTT
CGCAACATTAATTTTTGATACGCATTTTGGCTGGACGCTAGTATGTACTT
GTAAAATGCAAAATCATCCTGTAGATAACTGATGTTGTTTTTCTGAAAGC
TTAATTTCCTAGTGTGACTAACTGATTGATGTAAATTATCTTGTCCCTTG
GCCTTGGTAACAGATTTATTGTAACAAAATCAATTATATAATATATGATG
TCATCATTAACAAAATTTATGCTAGAGACTAATTTTAGCATTAGCTATTC
AAGAGACTGTCACATTCTCCCAAACAAACGCTTGTACCTTTTCTGCTCAT
TTTCAGGTTGAATTTATGTCTAATGTTATGGTGTTTTGAAAGGCTTGTTC
TTAGAGATGATAGGATATATGTCTGGTTTTCAAGAAAAGCCAAATTAATT
AAAATTCTTTTATATAAGAGTACACTTTAATATAATGTCATTAAAATTAT
GCATGTAAGTTTTATATTAGTACTATCTTTTCACATAGGTTTTACATTAA
GGTTTTAGTACATTATTTTCCTATGAAATCTCATCACTGCAAATTATTTG
TTGCCAGTTGTAAGGTAATTAAATAACCACCTAAAAATTAATTATTGAGG
AAAATGTGATTTATGACGTAATCAAATTATGACGTCATAAATCGTAAAAT
ATCTATATCTATGTCAAACTTTTGTCAAATTCGGACCAAAGATGCATCTT
ATTCTTAATGCTTTTACTTTCTGGAAAGATGACGTCAGCAAAATATGTAA
AAAGTTGAAAGCTGCTCCCTTATTTATTACACAAATATTACTAGTCATTT
TATTAAGACGAATTGAAAATAAAAACCGCCTTTATTAAAACCAGCCGTGG
TGTCCCAGGGATCGAATTAGCATACCGCATTTTGCAATTCGCAATGCGTT
TTTGGATTACTTTACAAGCTAAAAATTGGAAATTGGTCCATTTTAGGATG
CAAAATCATGCTTATCAGAAAATTTCGATGCACTTTCTATCCCTTATTTC
GATGCCTGTGTCCTTGAAAAAGCAAATAAAATTTTTTGCGTGCTAATTTC
AAGCCCATTGAATACTTGCCTAGTAATATTTGTGTAATAAGGTAATTTTT
GTTGACGTCATCAAATATTTCAATAAACATTTTTCTTCAAATAGTTACAC
TTCAATTAGATGCATCTTTGGTCCAAATTTGGTGAAGTTTGGAAATGTAT
TTCTAATATTATAGCGATTTTTTTACGATTCATGACGTCATCAAATTGGA
TCAAATTTTGACGTCATAACAACAATTTCTTTAATTATTAATTTTTGGGG
TTATATTTAATTAGGTCACAAGATTCATAAACTTCAAGGTATAACCTTTG
AGCCCTGAGTGGATCCCTACTTTACATAATGGCTGCTATTGATCGCAAAA
ACTTAGGGTAAATTGTTAGGTTTTTNTGTTGCCAGTTGTGAGGTAATTAA
ATAACCACCTAAAAATTAATTATTGAGGAAAATGTGATTTATGACGTAAT
CAGATTATGACGTCATAAATCGTAAAATATCTATATCTATGTCAAACTTT
TGTCAAATTTGGACTATTCTTAATGCTTTTACTTTCTGGAAAGATGACGT
CAGCAAAATATGTAAAAAGTTGAAAGCTGCTCCCTTATTTATTACACAAA
TATTACTAGTCATTTTATTAAGACGAATTGAAAATAAAAACCGCCTTTAT
TAAAACCAGCCGTGGTGTCCCAGGGATCGAATTAGCATACCGCATTTTGC
AATTCGCAATGCGTTTTTGGATTACTTTACAAGCTAAAAATTGGAAATTG
GTCCATTTTAGGATGCAAAATCATGCTTATCAGAAAATTTCGATGCACTT
TCTATCCCTTATTTCGATGCCTGTGTCCTTGAAAAAGCAAATAAAATTTT
TTGCGTGCTAATTTCAAGCCCATTGAATACTTGCCTAGTAATATTTGTGT
AATAAGGTAATTTTTGTTGACGTCATCAAATATTTCAATAAACATTTTTC
TTCAAATAGTTACACTTCAATTAGATGCATCTTTGGTCCAAATTTGGTGA
AGTTTGGAAATGTATTTCTAATATTATAGCGATTTTTTTACGATTCATGA
CGTCATCAAATTGGATCAAATTTTGACGTCATAACAACAATTTCTTTAAT
TATTAATTTTTGGGGTTATATTTAATTAGGTCACAAGATTCATAAACTTC
AAGGTATAACCTTTGAGCCCTGAGTGGATCCCTACTTTACATAATGGCTG
CTATTGATCGCAAAAACTTAGGGTAAATTGTTAGGTTTTTGAGTCAAAAT
TTGACTTTGCAGAGAAAACCTTAAAAACCTAATGCTTTTTATTAAACTTA
GGGTTAAAACTTTCTTGTTTTGTCTATATCAAGTTCGAAGAAACTGAAGT
GAAAGTATTTGATTTGAATCACATTCAAATGGCAGAAACAAAGCAGGGGC
TAATCATACTTGCACAAAAGATAATAAGCAATGACAAAAGCAATCAGGTA
AGGGCTTCTTAAAAGAATAATTGTTAAAATATAATTTTACTTAGTTGGTA
TTATGAAGTAAGGCTTCACGAGGCGAAGCTCCAGAATACAACAATCAGAA
AACATGTCTCCTCTTTTGTAGGCAAATGACCTTGTGAAACATAACTTTAA
TTACGCGCTTTTTTTATAAGAATGTTAGTGTGAGATTTTGGGGTTAGAAC
AACATGTCTCCTCTTTTGTAGGCAAATGACCTCGTAAAACATAACTTTAA
TTACACGCTTTTTTTATAAAAATATCAGTGTGAGATTTTGGGGTTAGAAC
AATAGGAAAATAAGAATAATGCTTCTCACCCTCAGCCAAAGTACACTTTG
AAAAAAAGTGTGTATTTACTATAATATTTACTGGGTTTTCAGTTGTTATC
AATGATTTGTAAAAATCCGGAAGTGTTCCCAGTTTAAGCAACTCAATCTT
GGACTTAAGCTTTTCCTCATTTTGCTTTATCCACACTAAATGTGAAAATG
AAATATATTCTATAAGGACAAAAGTTTGTGCTTCTATCTTCCTACATTCC
CTTACTAAAGTGTTTAGAATTTCTATTTGAGACCAGTATATTAATTGATT
GTTTTTAGACAGGTGAGATGGTCTATCGTGTGCAGTGGTATGACAGTATC
ATTCCTGAAAGCAATTTGAGAAAGATGTTTCCTGATTTACTCAAAGAATA
TGAGTCAAAACAAAAGGTCAAGCCCAATCAAAAGGAGGGAGGTGGAACGA
AAAGTCATCATAAGGAATCTCAAAAGCATACTACCTTAATTCCAAGTTCT
CCTAAAAAAATTCTCCATAAAACATATTCTCAAGAACTTTCTGCAAAAGA
AGTATTGGCAAAAAAATTGATTCAGAAACAAAAAAATGCATCTGGAACTG
ATGCGTTTCATTGTGATTTTTGTGAAAAGAAATTCAAGACATCAATTGAT
TTGAAATGTCATATTTATATTCATCAGTTTGCAAATGATCGAATTAAGGT
TACAAAACCTGGAGTAAGAGAGGGCCCTTCTATAGCCCCAGTTAAGTCGA
ACAAATCAAAAAGAAAGCCAACAAGAAAATATACACCATTAGAAAAAACA
AAATGTGATATATGTGGTAAAGAAGTAACTTCAAAGAGATTAGAGTCACA
TAAAATTACTTATCATTTGAAAAATGGAAAATTTCCTTGTTCTGAGTGTG
AAAAGCGTTTTCAATGTAACAGGGATCTTCAAAGGCATGCAGAAATACAC
AAAGATGGAAAGCTTGAGAAAACAAGCTGTGATATTTGTGGTAAAATTTT
AACAAAGAGGCATTTGGAGAATCATAAGAATCGTTTTCATTCACAAGGGG
AATATACTTGCAAGAAGTGTAATAAAATATTCAAGCATCTTCTTGACCTA
GACTGGCATCTCAAGAAACCGTGCACTGAAACACCGAATGCTGAGGAAAC
AAGCACTAGAAAATAGTGTAACAAAATATCCAATAGTATAAATGATTGAA
CATTTAATTTTAATTTTAATTTTGTTTGTAAAATTTTGTACATATTTAAG
TATATAAGTAACCTTTGTATCAAAGCCAACTTGAGGGCAGGAAAAGGCCC
ACTTATTCTTTCCCTGGATTTCTCCACTTACCATATCTTAAATTGCTGAA
AATTAAGCAGAGAGGCAACCATTTTATGAATCTCTTGTATGACCCCCCTT
GGGCTTGAACCTACAGCCTTGCACACTTTAATTGAATGCTCTTTTGGGCT
GTTGTAGTATATCCTTCAATTCAGCTTTTCGTTCTCTCAGCCCTAACGGA
TAGTGATGACAATGTAACATAAGATTTTTAAACATAGTATTTATTGGGGG
GGTTTGTACTTTTACGGTGTGACGGGATTGGCCCTTTTTTAGTACGGTAT
CACGGGATTTGACGAAAAAAAGACGGGAAAACAACGGTATTTTAAAATCA
GACGGTGACGGTATTTAGGTACATTTTTGCCCTGTACAAGCCGATGTGAC
GGTGTTATTATTTTTTCAATTTTCGGGATTCCGGGATTCAGCAAAAAATT
TGATGGGAAAACGGTATTTCAAACCCCTACATACCGCCCCCCCCCCTTTA
TTGATATAGATTAAAATAGATCACATTATTTAGCATATTTTAGGTACATA
TTATTTTTAATTTTTGTGCATAGAATTAAAACATGATTTTCAGGCATGAA
AAAAACTAAGTAAATAAGGCACAGACTATTTTAAACTATTTTTGTAGGTT
TTTTGTTTTATTTCAAAATTCACTATGAATTAACTTTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000500XLOC_000500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000834-exon-sc0000005-1575043694:774457..774725TCONS_00000834-exon-sc0000005-1575043694:774457..774725Clytia hemisphaericaexon
TCONS_00000834-exon-sc0000005-1575043694:771929..772042TCONS_00000834-exon-sc0000005-1575043694:771929..772042Clytia hemisphaericaexon
TCONS_00000834-exon-sc0000005-1575043694:769635..771317TCONS_00000834-exon-sc0000005-1575043694:769635..771317Clytia hemisphaericaexon
TCONS_00000834-exon-sc0000005-1510915933:774457..774725TCONS_00000834-exon-sc0000005-1510915933:774457..774725Clytia hemisphaericaexon
TCONS_00000834-exon-sc0000005-1510915933:771929..772042TCONS_00000834-exon-sc0000005-1510915933:771929..772042Clytia hemisphaericaexon
TCONS_00000834-exon-sc0000005-1510915933:769635..771317TCONS_00000834-exon-sc0000005-1510915933:769635..771317Clytia hemisphaericaexon
TCONS_00000834-exon-sc0000005-1491911889:774457..774725TCONS_00000834-exon-sc0000005-1491911889:774457..774725Clytia hemisphaericaexon
TCONS_00000834-exon-sc0000005-1491911889:771929..772042TCONS_00000834-exon-sc0000005-1491911889:771929..772042Clytia hemisphaericaexon
TCONS_00000834-exon-sc0000005-1491911889:769635..771317TCONS_00000834-exon-sc0000005-1491911889:769635..771317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:769635..774725 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.997367	1.28603	1.09305	1.33673	3.28635	3.03881	3.10287	4.89186	1.23649	0.839879	1.0263	1.34357	0.912746	0.688325	1.12928	0.710586	1.30096	1.40847	1.40584	1.54393	2.03111	1.15426	0.77451	1.14676	0.777365	1.38756	1.64771	2.50161	1.55172	1.45514
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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