TCONS_00000817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000817
Unique NameTCONS_00000817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length960

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000817 ID=TCONS_00000817|Name=TCONS_00000817|organism=Clytia hemisphaerica|type=transcript|length=960bp
cgaatttgaaaatcatgtcattaaaattgataagaacaaaggaaaacaAT
AGGTGTTGTTTCACaaaatattcaagaaaataatcagCATAAATAGAAGG
AGTGTGATATGGAAGAACATCATCAAACGGAACATCATCCACCAAGCATT
GAAAGAACAATCAAGCCAAGAAAAtttcaaTCATGAAGCTTTTCATCGTT
ACCGCCTTGTTGGTTTTAGCCACCGTCGCCGATGCTCAGTACTGCGATGG
GTTTTGTCTTACATCTAGAGATTGCTCATGGATGGATGGATGCGAATGCA
ATCCCTTCTTAAGACGCTGTGTACCATATTTCAAAGATGAAGGATTGAAC
AAGAGAGATATCTGCTCAGGCTATTGTCGTTCATCTACAGGTTGCTCAAA
AGAATGCAAATGCAATACCTTCGNATCAGCATAAATAGAAGGAGTGTGAT
ATGGAAGAACATCATCAAACGGAACATCATCCACCAAGCATTGAAAGAAC
AATCAAGCCAAGAAAAtttcaaGCATGAAGCTTTTCATCGTTACCGCCTT
GTTGGTTTTAGCCACCGTCGCCGATGCTCAGTACTGCGATGGGTTTTGTC
TTACATCTAGAGATTGCTCATGGATGGATGGATGCGAATGCAATCCCTTC
TTAAGACGCTGTGTACCATATTTCAAAGATGAAGGATTGAACAAGAGAGA
TATCTGCTCAGGCTATTGTCGTTCATCTACAGGTTGCTCAAAAGAATGCA
AATGCAATACCTTCGTTAACCGCTGTGTACCGCTTTTTTAAAGGTGTCGG
TCAACACGTACACCTACCCCACATCCTGACGACATATCAATTTGATCTTA
ATGATTtatcttattttcttttttgtagtATTTGAGGTGGACTAAAATAG
AACTATGAACAAAATAACCATTCAATTTCACTCATTATTTCCCCTCTTAC
CCGAAACTCT
Run BLAST on NCBI

transcript from alignment at sc0000005:618296..619979-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000817 ID=TCONS_00000817|Name=TCONS_00000817|organism=Clytia hemisphaerica|type=transcript|length=1684bp|location=Sequence derived from alignment at sc0000005:618296..619979- (Clytia hemisphaerica)
CGAATTTGAAAATCATGTCATTAAAATTGATAAGAACAAAGGAAAACAAT
AGGTGTTGTTTCACAAAATATTCAAGAAAATAATCAGCATAAATAGAAGG
AGTGTGATATGGAAGAACATCATCAAACGGAACATCATCCACCAAGCATT
GAAAGAACAATCAAGCCAAGAAAAGTAAGTTCATTTAAGTATTAATAAGG
CGTTTTTGAAATATTGAAACACCATCACTATTTCAATGAGACTTTACAAG
AACAAGAGGTCAATTCTCAAAGTCCGGGGTTACTAGGGTTGACTAGAGTT
GAGGCTATGTACAGATGAGACCCCTGAAGTGAGATCCGATCATTGGTGAG
ACTATTTTTTGGCAAATTTTACAAACGTTTTACCGTTAAAAAGCGACCCT
TACAAAGGCTTTTTGAGATATTTGGCCTCAAATTTCATAAACTTTGACCC
TTACCATTTTTGCTCAAGTATCTCCCGGGTCTCAAAGAAGAAAGAGTTCT
GTTAAATGTCACAGTTATTTTTCTTTTTTTCTTTAGTTTCAATCATGAAG
CTTTTCATCGTTACCGCCTTGTTGGTTTTAGCCACCGTCGCCGATGCTCA
GTACTGCGATGGGTTTTGTCTTACATCTAGAGATTGCTCATGGATGGATG
GATGCGAATGCAATCCCTTCTTAAGACGCTGTGTACCATATTTCAAAGAT
GAAGGATTGAACAAGAGAGATATCTGCTCAGGCTATTGTCGTTCATCTAC
AGGTTGCTCAAAAGAATGCAAATGCAATACCTTCGNATCAGCATAAATAG
AAGGAGTGTGATATGGAAGAACATCATCAAACGGAACATCATCCACCAAG
CATTGAAAGAACAATCAAGCCAAGAAAAGTAAGTTCATTTAAGTATTAAT
AAGGCGTTTTTGAAATATTGAAACACCATCACTATTTCAATGAGACTTTA
CAAGAACAAGAGGTCAATTCTCAAAGTCCGGGGTTACTAGGGTTGACTAG
AGTTGAGGCTATGTACAGATGAGACCCCTGAAGTGAGATCCGATCATTGG
TGAGACTATTTTTTGGCAAATTTTACAAACGTTTTACCGTTAAAAAGTGA
CCCTTACAAAGGCTTTTTGAGATATTTGGCCTCAAATTTCATAAACTTTG
ACCCTTACCATTTTTGCTCAAGTATCTCCCTGGTCTCAAAGAAGAAAGAG
TTCGATTAAATATCACAGTTAACTTTCTTTTTTTCTTTAGTTTCAAGCAT
GAAGCTTTTCATCGTTACCGCCTTGTTGGTTTTAGCCACCGTCGCCGATG
CTCAGTACTGCGATGGGTTTTGTCTTACATCTAGAGATTGCTCATGGATG
GATGGATGCGAATGCAATCCCTTCTTAAGACGCTGTGTACCATATTTCAA
AGATGAAGGATTGAACAAGAGAGATATCTGCTCAGGCTATTGTCGTTCAT
CTACAGGTTGCTCAAAAGAATGCAAATGCAATACCTTCGTTAACCGCTGT
GTACCGCTTTTTTAAAGGTGTCGGTCAACACGTACACCTACCCCACATCC
TGACGACATATCAATTTGATCTTAATGATTTATCTTATTTTCTTTTTTGT
AGTATTTGAGGTGGACTAAAATAGAACTATGAACAAAATAACCATTCAAT
TTCACTCATTATTTCCCCTCTTACCCGAAACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000490XLOC_000490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000817-exon-sc0000005-1575043694:619806..619979TCONS_00000817-exon-sc0000005-1575043694:619806..619979Clytia hemisphaericaexon
TCONS_00000817-exon-sc0000005-1575043694:619102..619443TCONS_00000817-exon-sc0000005-1575043694:619102..619443Clytia hemisphaericaexon
TCONS_00000817-exon-sc0000005-1575043694:618296..618739TCONS_00000817-exon-sc0000005-1575043694:618296..618739Clytia hemisphaericaexon
TCONS_00000817-exon-sc0000005-1510915933:619806..619979TCONS_00000817-exon-sc0000005-1510915933:619806..619979Clytia hemisphaericaexon
TCONS_00000817-exon-sc0000005-1510915933:619102..619443TCONS_00000817-exon-sc0000005-1510915933:619102..619443Clytia hemisphaericaexon
TCONS_00000817-exon-sc0000005-1510915933:618296..618739TCONS_00000817-exon-sc0000005-1510915933:618296..618739Clytia hemisphaericaexon
TCONS_00000817-exon-sc0000005-1491911889:619806..619979TCONS_00000817-exon-sc0000005-1491911889:619806..619979Clytia hemisphaericaexon
TCONS_00000817-exon-sc0000005-1491911889:619102..619443TCONS_00000817-exon-sc0000005-1491911889:619102..619443Clytia hemisphaericaexon
TCONS_00000817-exon-sc0000005-1491911889:618296..618739TCONS_00000817-exon-sc0000005-1491911889:618296..618739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:618296..619979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.11505	0	0	0.622114	0	0	0.187281	0.133924	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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