TCONS_00000814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000814
Unique NameTCONS_00000814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000814 ID=TCONS_00000814|Name=TCONS_00000814|organism=Clytia hemisphaerica|type=transcript|length=600bp
CTTGTCTtatattttggtcattttcgcACGTCAATCCACCCCCTGGTTGC
ACCTCATTTGACGAGGATGGCACTCCATCCTGCCAAAGACATGTATATCC
ACAAGTCTCATCATCAAACAAAATTGGTTGATTTTGTGTCACCACGAAGG
TTTCACCACATCTTTGGAGATCTTTGTACCATCTCCTCAATTCAATATCA
GTACCATTGCTCTGTCTTAACACTCCTTTATAACTTCTCGTTAAACCAGT
TAATAATATCCATGAGAATAACGTTATAACAATGTTATCTACACGGTTTG
ACATTATACAACTGTAATATCTTGTATGCCGATGCATCGATCTTAATCGA
TTTCTCAGACAAAATTCTACCACCAGAGTTTTAGCCTTTGGATCAAACCA
GCACTGGAAATAGTTGAGACTGACTGACCCTTCATCTGGTATTTTTCTAT
TACTCTCTAGAGAATCGATTCATGCGTTTTGAAAAAAAGCATCAATATCT
CTAGAGAGAAAAGTAAtgattaataatgtttttgttttgtcgAAATGTTC
GCCTTATGTCGTCTCATTATTAATTATCCCTCCTCCGTAGGAAAACTTTT
Run BLAST on NCBI

transcript from alignment at sc0000005:540332..542043-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000814 ID=TCONS_00000814|Name=TCONS_00000814|organism=Clytia hemisphaerica|type=transcript|length=1712bp|location=Sequence derived from alignment at sc0000005:540332..542043- (Clytia hemisphaerica)
CTTGTCTTATATTTTGGTCATTTTCGCACGTCAATCCACCCCCTGGTTGC
ACCTCATTTGACGAGGATGGCACTCCATCCTGCCAAAGACATGTATATCC
ACAAGTCTCATCATCAAACAAAATTGGTTGATTTTGTGTCACCACGAAGG
TTTCACCACATCTTTGGAGATCTTTGTACCATCTCCTCAATTCAATATCA
GTACCATTGCTCTGTCTTAACACTCCTTTATAACTTCTCGTTAAACCAGT
TAATAATATCCATGAGAATAACGTTATAACAATGTTATCTACACGGTTTG
ACATTATACAACTGTAATATCTTGCATACGCCGATGCCTCGATCTAAATC
GATTTCTCANATTACAATTCTGAAACATTCGTTTAGAACAGTGTTTTCAT
GCTGTTTTACAAACTAGTTTAGATTCAAAGTAATATTACACATATCACTC
AAATCATATTATATACTACTGCACAGTGCTTCCTTCGAACTGTTCTAGCT
CGTATTAAGCTAATTTCCTAATTACATAATGATCTATTGAAATACTTCCT
TACCCATTTATTCAGACTTCCATCCGGACAGACGTTTCCACTTTTCATGC
AAGTGTTTATTACGTCATTGTTACATCATGATACCCCTGTGTCATAGACC
CGCTGAGAAAGATTGACAAAAATTTCGTCCCGGTGGGAAAATACCTTAGA
ATTTCAGCCTCACTTGGACTTAACTTTTATTTTATCCCCATTCGAAATTT
AACGTTTAAAAATTGCACTTCAAAGCCATTGCCACTGGATTCTATAATCT
TGAAACAATTGGGATTTCAATAGGAATTTTTATCCCCACTGGAGGAAAAA
AGTTCCACCGGGGCTGCGAGACAGGGGTATGTCATGATATGACCATCATT
GAATCCTTACCCTGATTGACATTTGATTTGTGACTTTTCTATATGTTAGG
GAATTTCTGGTTTACTTGAGTCGTTTAAAACAGCAACGTTGTACGATAAT
ACCATACTTATTACGGGATAACCGAATCCAATAAAAAATGGAATCTTACT
TCATCCCCAAAACTTCTTGTTCTGAACAATAAAGTTTTCGATTTTCAAAT
ACTCAAGCTTACCTTGTCTTATATTTTGGTCATTTTCGCACGTCAATCCA
CCCCCTGGTTGCACCTCATTTGACGAGGATGGCACTCCATCCTGCCAAAG
ACATGTATATCCACAAGTCTCATCATCAAACACAATTGGTTGATTTTGTG
TCACCACGAAGGTTTCACCACATCTTTGGAGATCTTTGTACCATCTCCTC
AATTCGATATCAGTACCATTGCTCTGCCTTAACACTCCTTTATAACTTGT
CGTTAAACCAGTTAATAATATCCATGAGAATAACGTTATAACAATGTTAT
CTACACGGTTCGACATTATACAACTGTAATATCTTGTATGCCGATGCATC
GATCTTAATCGATTTCTCAGACAAAATTCTACCACCAGAGTTTTAGCCTT
TGGATCAAACCAGCACTGGAAATAGTTGAGACTGACTGACCCTTCATCTG
GTATTTTTCTATTACTCTCTAGAGAATCGATTCATGCGTTTTGAAAAAAA
GCATCAATATCTCTAGAGAGAAAAGTAATGATTAATAATGTTTTTGTTTT
GTCGAAATGTTCGCCTTATGTCGTCTCATTATTAATTATCCCTCCTCCGT
AGGAAAACTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000488XLOC_000488Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000814-exon-sc0000005-1575043694:541742..542043TCONS_00000814-exon-sc0000005-1575043694:541742..542043Clytia hemisphaericaexon
TCONS_00000814-exon-sc0000005-1575043694:540332..540629TCONS_00000814-exon-sc0000005-1575043694:540332..540629Clytia hemisphaericaexon
TCONS_00000814-exon-sc0000005-1510915933:541742..542043TCONS_00000814-exon-sc0000005-1510915933:541742..542043Clytia hemisphaericaexon
TCONS_00000814-exon-sc0000005-1510915933:540332..540629TCONS_00000814-exon-sc0000005-1510915933:540332..540629Clytia hemisphaericaexon
TCONS_00000814-exon-sc0000005-1491911889:541742..542043TCONS_00000814-exon-sc0000005-1491911889:541742..542043Clytia hemisphaericaexon
TCONS_00000814-exon-sc0000005-1491911889:540332..540629TCONS_00000814-exon-sc0000005-1491911889:540332..540629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:540332..542043 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.142308	0	0.122362	0	0	0.109211	0	0	0	0	0.99023	0.353185	0.352102	0	0	0	0.234035	1.14098	0.00220835	1.0987	0	0.424626	0	0.492529	0.53114	0	0	0.11029
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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