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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000779 ID=TCONS_00000779|Name=TCONS_00000779|organism=Clytia hemisphaerica|type=transcript|length=6810bpRun BLAST on NCBI protein sequence of TCONS_00000779-protein >TCONS_00000779-protein ID=TCONS_00000779-protein|Name=TCONS_00000779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp MAEDEGAYERISSFLNLRNIGHLLETFKVHKIDDTVLKSVDDLTLANLGLRun BLAST on NCBI transcript from alignment at sc0000005:265228..311343- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000779 ID=TCONS_00000779|Name=TCONS_00000779|organism=Clytia hemisphaerica|type=transcript|length=46116bp|location=Sequence derived from alignment at sc0000005:265228..311343- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:265228..311343- >TCONS_00000779 ID=TCONS_00000779|Name=TCONS_00000779|organism=Clytia hemisphaerica|type=CDS|length=8952bp|location=Sequence derived from alignment at sc0000005:265228..311343- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000779 vs. Swiss-Prot (Human)
Match: DCNL4 (DCN1-like protein 4 OS=Homo sapiens GN=DCUN1D4 PE=1 SV=2) HSP 1 Score: 246.128 bits (627), Expect = 1.073e-71 Identity = 120/242 (49.59%), Postives = 176/242 (72.73%), Query Frame = 2
Query: 74 IMPPKRKRKGGSQDTSSKKVKQNEQENMSSMQKYFKSALNCVDMPSNKDQAFSNKRCESFFHKYADSNLSLIGPHGVEKLCQDLEVQPEDIVMLVLSWKLGAENMGWYKLAEWKTGMTSIECDNISKLKNKIPSLRGLLKDPSSFKKIFRYAFDFARDKEQKSLDIDTGKAMLQLLL-ESWHLVADFIQFLNQSRYKIINRDQWNSLLEFIKTVDTADFSGYDDEGAWPVMLDEFVEWHKEK 796
+MPP++KR+ S D S K +++ S +KY + + +++AFS+KRC +F++YA ++ ++GP G+EK C+D+ V+PE++VMLVL+WKL A+NMG++ L EW GMTS++CD KL+N + LR L D ++FK I+RYAFDFAR+K+Q+SLDI+T K ML LLL + W L F QFL QS+YK+IN+DQW ++LEF +T++ D S YD++GAWPV+LDEFVEW+K+K
Sbjct: 60 VMPPRKKRRPASGDDLSAKKSRHD----SMYRKYDSTRI------KTEEEAFSSKRCLEWFYEYAGTD-DVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTIN-LDLSNYDEDGAWPVLLDEFVEWYKDK 289 The following BLAST results are available for this feature:
BLAST of TCONS_00000779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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