TCONS_00000772 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000772
Unique Name	TCONS_00000772
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	851

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000005:208118..211883-

transcript sequence

>TCONS_00000772 ID=TCONS_00000772|Name=TCONS_00000772|organism=Clytia hemisphaerica|type=transcript|length=851bp
attcgaatgttttctcttttgttcgaattcgaaaagtaaatatcatgtct
ggggaaatccctctgattggaatgtttacttaagaaactcttctaaacaG
GGTTTcacggttttagcctctacaaaggagagttttagaaaatataaaat
cgttctgtaaattccacaatactattatgcattatgcaatatgcattatg
ttttatgcattttgtacctgccgtaTTATAAGACCCTGTCTCTTTTGGGG
TTTTATCAGAGTGTCtattattttgctagcaacttgcgaattgaggtgga
gtctggatcgcttcgcaacNGCTCAAAATAATAATGTTGTTTTATTTAAA
CGAGACAATCCCCATTACGAtgtttaaaacgcatgcgtaaacaTTACATT
TCTATACAACATCCATTCTGATAATGTAAAGACGCCCCTCGATTGAATGT
GAAATTTAAGTTACAGATAAAAAATACTCATTCCATTTAGTCACTGAGTA
TAAGGTATGTATCGGGCTTATGCTACTATCGAACTTTTCATCGACTTTTC
GAACTTTTGGTTGGGTGGTTGGGAAACATTTTAAAACAACAATTGAAAAA
CCTGCCCNTATTAAAGAATTTTAGTGGAAGCGTAAACAACAAAGACTGCt
tcatttggaaattttgtttttcgcaATGAGCTGTACTTTCTATCTAAAGc
gttaaatatttattttttttgggcgtctattaatttgaaagctcagtaag
acaaaaaaaatactgtTTAAGGAGTGCTCAGATTTATATCCTCGTTGCAG
TATAAGGCAATTTTGTGGTAGTTGTTTCCCTTCAATGATCATCGTAAGTT
A

Run BLAST on NCBI

transcript from alignment at sc0000005:208118..211883-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000772 ID=TCONS_00000772|Name=TCONS_00000772|organism=Clytia hemisphaerica|type=transcript|length=3766bp|location=Sequence derived from alignment at sc0000005:208118..211883- (Clytia hemisphaerica)
ATTCGAATGTTTTCTCTTTTGTTCGAATTCGAAAAGTAAATATCATGTCT
GGGGAAATCCCTCTGATTGGAATGTTTACTTAAGAAACTCTTCTAAACAG
GGTTTCACGGTTTTAGCCTCTACAAAGGAGAGTTTTAGAAAATATAAAAT
CGTTCTGTAAATTCCACAATACTATTATGCATTATGCAATATGCATTATG
TTTTATGCATTTTGTACCTGCCGTATTATAAGACCCTGTCTCTTTTGGGG
TTTTATCAGAGTGTCTATTATTTTGCTAGCAACTTGCGAATTGAGGTGGA
GTCTGGATCGCTTCGCAACNGCTCAAAATAATAATGTTGTTTTATTTAAA
CGAGACAATCCCCATTACGATGTTTAAAACGCATGCGTAAACATTACATT
TCTATACAACATCCATTCTGATAATGTAAAGACGCCCCTCGATTGAATGT
GAAATTTAAGTTACAGATAAAAAATACTCATTCCATTTAGTCACTGAGTA
TAAGGTATGTATCGGGCTTATGCTACTATCGAACTTTTCATCGACTTTTC
GAACTTTTGGTTGGGTGGTTGGGAAACATTTTAAAACAACAATTGAAAAA
CCTGCCCNTATTAAAGAATTTTAGTGGAAGCGTAAACAACAAAGACTGCT
TCATTTGGAAATTTTGTTTTTCGCAATGAGCTGTACTTTCTATCTAAAGC
GTTAAATATTTATTTTTTTTGGGCGTCTATTAATTTGAAAGCTCAGTAAG
ACAAAAAAAATACTGTTTAAGGAGTGCTCAGATTTATATCCTCGTTGCAG
TATAAGGCAATTTTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAAGTCTTATTTTATCTACTTTTTGTCTGTGT
AATAAACGTTCAAAGTGTGTGTTTTTCTCAGATTTGATTTAAAAAGCCGT
CTTGAAAAGATACTTCTTAGTGTGGTAGTAAATTAGAGCCAAATTAGAGA
CATTTACATCCCTTTGCTTGGAATTGAGAACATTTTTGCCTAGTTTTTGA
GTATTTCCAAAAGACTATGTTTTTTTCTTGTCACAACTTTGTCTACCATT
TTTCTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTGGGTGGTT
GGGAAACATTTTAAAACAACAATTGAAAAACCTGCCCAAAATATTTAATC
CACATGATATTACATTATTCCCTATTTAAAGAATTTTAGTGGAAGCGTAA
ACAACAAAGACTGCTTCATTTGGAAATTTTGTTTCTCGCAATGAGCTGTA
CTTTCTATCTAAAACGTTAAATATTTTTTTTTTTTGGGCGTCTATTAATT
TGAAAGCTCAGTAAGACAAAAAAAATAATGTTTAAGGAGTGCTCAGATTT
ATATCCTTGGTGCAGTATAAGGCAATTTTGTGGTAGTTGTTTCCCTTCAA
TGATCATCGTAAGTTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000478	XLOC_000478	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000772-exon-sc0000005-1575043694:211078..211883	TCONS_00000772-exon-sc0000005-1575043694:211078..211883	Clytia hemisphaerica	exon
TCONS_00000772-exon-sc0000005-1575043694:208118..208162	TCONS_00000772-exon-sc0000005-1575043694:208118..208162	Clytia hemisphaerica	exon
TCONS_00000772-exon-sc0000005-1510915933:211078..211883	TCONS_00000772-exon-sc0000005-1510915933:211078..211883	Clytia hemisphaerica	exon
TCONS_00000772-exon-sc0000005-1510915933:208118..208162	TCONS_00000772-exon-sc0000005-1510915933:208118..208162	Clytia hemisphaerica	exon
TCONS_00000772-exon-sc0000005-1491911889:211078..211883	TCONS_00000772-exon-sc0000005-1491911889:211078..211883	Clytia hemisphaerica	exon
TCONS_00000772-exon-sc0000005-1491911889:208118..208162	TCONS_00000772-exon-sc0000005-1491911889:208118..208162	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000005	supercontig	sc0000005:208118..211883 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21752	2.2757	2.98586	2.49583	3.37075	2.45664	2.26078	3.29753	19.7843	28.6564	17.1749	27.1821	27.4713	27.6724	25.5207	36.7151	27.5101	32.9418	21.4637	29.3849	76.8561	91.5517	32.9753	41.4299	1.756	4.79321	73.6991	65.2897	72.5163	57.2689

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00000772 vs. Swiss-Prot (Human)

BLAST of TCONS_00000772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00000772 (transcript) - C. hemisphaerica