|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000764 ID=TCONS_00000764|Name=TCONS_00000764|organism=Clytia hemisphaerica|type=transcript|length=2872bpRun BLAST on NCBI transcript from alignment at sc0000005:138267..154296- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000764 ID=TCONS_00000764|Name=TCONS_00000764|organism=Clytia hemisphaerica|type=transcript|length=16030bp|location=Sequence derived from alignment at sc0000005:138267..154296- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000764 vs. Swiss-Prot (Human)
Match: WDR36 (WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1) HSP 1 Score: 382.489 bits (981), Expect = 2.937e-116 Identity = 222/533 (41.65%), Postives = 329/533 (61.73%), Query Frame = 1
Query: 118 LKLPPITCIAAESARAYDWDNVVTCHLGHGKAHTWNSQNRCIGKYTFKCKSKDNQKIVANCCNVSSCGNFTVIGYDNGQIERYNLQSGLDRGSV---KAHEKTIRGLHISSANFALISTSADKTIKFWRFKDFCLDTVVQCESAVAISKLHRESSLLAVAFXXXXXXXXXXXXKAVVRSFFGHRNVITDISWSLDARWLVSSSIDGTIKTWDVPTGRLIDCFLVEEAPTSVAFSPSGEMLASTHQDNVGIFLWANKIKYSGGYPTPLPNDFQPSTISLPQTIVDEQGGTEDME-GEESIETKEVNEEELTDYITPEQLSEELVTLSMLPDSRWKNLVNLDLIKLRNXXXXXXXXXXXXXFFLPSVAGLETKFDIQKDDEKAENVDKSRILSNKNFESDSILLRILAKDPETCTPLVE------------LLKEMGPSDIEAEFRMLGPEMNGTIDGLVDLLKAFVILLKSGKYYELVQAYITLFLKLHGDLVPKHEGLRQQADELITVIEDTWQDCQKLLHQSTCLVKYFKSA 1668
++LPPIT AAE AR DWD ++ CH G TWN Q IG Y K K I A +++SCGNF VIG +G ++ YN+QSG+ RGS +AH+ ++RG+ + N ++T ++ +KFW FK+ L V S+ I LHR+S +L +A DD++I + DI+T+ +VR F GH+ I D+++S D RWL+S+++D +I+TWD+P+G LIDCFL++ AP +V+ SP+G+ LA++H D++GI+LW+N YS PLP D+ PS + LP T T+D+E EE++E +EL +Y +PEQL+E+LVTLS+LP+SRWKNL+NLD+IK +NKPKEPPK PK+APFF+P++ GL ++ + + + +S + L +LA+ + C L E LLKE GPS IE E R L P+ G+I+ + LK ++L + +EL QAY+ LFLKLH ++P L ++ L + +E+ W Q L +QS C++ Y KSA
Sbjct: 439 VRLPPITKFAAEEARESDWDGIIACHQGKLSCSTWNYQKSTIGAYFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSFGKDQAHKGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPNIMLLHRDSGILGLALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDCSIRTWDLPSGCLIDCFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLYSVVSLRPLPADYVPSIVMLPGTC-----QTQDVEVSEETVEP----SDELIEYDSPEQLNEQLVTLSLLPESRWKNLLNLDVIKKKNKPKEPPKVPKSAPFFIPTIPGLVPRYAAPEQNNDPQ-------------QSKVVNLGVLAQKSDFCLKLEEGLVNNKYDTALNLLKESGPSGIETELRSLSPDCGGSIEVMQSFLKMIGMMLDRKRDFELAQAYLALFLKLHLKMLPSEPVLLEEITNLSSQVEENWTHLQSLFNQSMCILNYLKSA 949 The following BLAST results are available for this feature:
BLAST of TCONS_00000764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.