TCONS_00000763 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000763
Unique Name	TCONS_00000763
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	474

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000005:130066..134320-

transcript sequence

>TCONS_00000763 ID=TCONS_00000763|Name=TCONS_00000763|organism=Clytia hemisphaerica|type=transcript|length=474bp
AACTGTATTGACCGTTcgtaatgatgaaaatgaactACAATAGCTTTACA
AATACATGGAGTAAAAATGAAGCGACACTTTGCGAAGTAAAGAGAGAGCG
ATCATGAAGACATGttattctttacaaaaaaaagtttcaaaccacGACGT
TGTTGGTGTCAAGTTCTCTGCTTCGTCTACCTCCTCTCGCTCATCCAACG
TATTCGAAAAAAGAGGGACAGGAAACTATTGATAGTTTCAActtattgat
atttttcaagaGAGTGGTTATTGCTCAACGACTTCTATATCATATGATTA
GATAGATTGGACACTCTTTATTGGTGCGAGAGGTGAAAGAATTTGGTTAG
AGGTGTGAAAAGCATGCATTTTGTTGGTCTGGTGAGATGACACCTCGTGC
ACATCCGCATCCGCATATGAGAATCATCAATTACAAACGATACAAGAGAG
TTTACAGCGGTCACTGGTGGTAAG

Run BLAST on NCBI

transcript from alignment at sc0000005:130066..134320-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000763 ID=TCONS_00000763|Name=TCONS_00000763|organism=Clytia hemisphaerica|type=transcript|length=4255bp|location=Sequence derived from alignment at sc0000005:130066..134320- (Clytia hemisphaerica)
AACTGTATTGACCGTTCGTAATGATGAAAATGAACTACAATAGCTTTACA
AATACATGGAGTAAAAATGAAGCGACACTTTGCGAAGTAAAGGTATGAAA
ATGAATCGATCACTTGAACTCGATTTGGTGCCATAACTTAACACTTTTTG
AAGTATTAAAGTACTTTTTTGACAACATTTAAGTCATCAGTTTTTATGGA
ATCATTGCAGAATTGTATACCACAATAATCTTATAAGAACATCTTTTCCT
TCAAATTCTTGAAAAATAATTTTCAAGACTTTGTATCCAATCAGGTTTGA
ATCAAGGTTAAATCTTTGAAATCAGCAAAAGTACTGGCGAAGTAAATTTG
TATTTTTTGGTACGGTGCATTATATCGAGGCTGTAAGAAAGATGTACTGA
AAGGGCAACAACCCCCCCTACGTTCTTACAGAAAAAGGTACCCCTAAAAA
GACAATACATTCACAAAAATGTTGTTGACACTTAAACAAACATTTCACTT
CCTTTACCTCTTAGAGAGAGAGCGATCATGAAGACATGTTATTCTTTACA
AAGAAAGTTTCAAACCACGACGTTGTTGGTGTCAAGTTCTTCTACTTCGT
CTATCTCCTCTCTCATCCAACGTATTCGAAAAAAGAGGGACAGGAAACTA
TTGATCGTTTCAACTTATTATGGTTATTGCTCAACGACTTCTATATCATA
TGATTGGATAGATTGGACACTCTTTATTGGTGCGAAAGGTATGCAAAATG
TCCATCAATTCAAGAAATTCTCGGTTATGGTTTTTATAGGCTTCTGCTCA
TCCTCTAGCGNTCGTGTTCTTTTAGAATAGTTCTTATAAAAAAGAGCGCG
AAGGATGATAACACCGCCTCTGAGATCATATACACAGTATGCATTAATTT
CCCTTTCGTGTAAAAACATTCTGTCGTTGCGTGCTCGTTTAGATCTCCAC
CGAGGGTCAGTTTGTTCCCCTTTCTTCAAGGAAATCGTGGGTGTCAAATT
TTCATAAAATTACGACCATTATTTTCGATGTTCTACGCATCTAGTTATTT
GTTCATAGAATAATTTAGAATTTTTTTGGTCCTGTCACCTCGTTAACGAT
CCTTTGTTATGCAATCATTGCATTCTTATAGTAAGAGAGTTCGATGTTGT
TACCTACTTACATAAGATACTACTAATGAGGAGTCAACCTTTTCGTGGAG
GCGAGTGGAGAAAAAATTGTAAAATATGCATTACTACGCAATTTAAAAAG
CATGTGACCTAAAGAAAATCAAGTCTCATTCAAAAGAAAGTTTTTAGTCT
CTGTTTCAAGCACTCAGGTTTGTACTTGTCATGAAATATTTTTGATTTCT
TTAGATCTAATTGGTGTTGAACTGTATTGACCGTTCGTAATGATGAAAAT
GAACTACAATAGCTTTACAAATACATGGAGTAAAAATGAAGCGACACTTT
GCGAAGTAAAGGTATGAAAATGAATCGATCACTTGAACTCGATTTGGTGC
CATAACTTAACACTTTTTGAAGTATTAAAGTACTTTTTTGACAACATTTA
AGTCATCAGTTTTTATGGAATCATTGCAGAATTGTATACCACACTAATCT
TATAAGAACATCTTTTCCTTCAAATTCTTGAAAAATAATTTTCAAGACTT
TGTATCCAATCAGGTTTGAATCAAGGTTAAATCTTTGAAATCAGCAAAAG
TACTGGCGAAGTAAATTTGTATTTTTTGGTACGGTGCATTATATCGAGGC
TGTAAGAAAGATGTACTGAAAGGGCAACAACCCCCCCTACGTTCTTACAG
AAAAAGGTACCCCTAAAAAGACAATACATTCACAAAAATGTTGTTGACAC
TTAAACAAACATTTCACTTCCTTTACCTCTTAGAGAGAGAGCGATCATGA
AGACATGTTATTCTTTACAAAAAAAAGTTTCAAACCACGACGTTGTTGGT
GTCAAGTTCTCTGCTTCGTCTACCTCCTCTCGCTCATCCAACGTATTCGA
AAAAAGAGGGACAGGAAACTATTGATAGTTTCAACTTATTGATATTTTTC
AAGAGAGTGGTTATTGCTCAACGACTTCTATATCATATGATTAGATAGAT
TGGACACTCTTTATTGGTGCGAGAGGTATGCAAAATGTCCATCAATTCAA
GAAATTCTCGGTTATGGTTTTTATAGGCCTGCTCATCCTCTAGCGAAAAA
GGTTTCTATATAGGAAGCATATCTAGACTATGGTTTTTATACAGGAAATT
TTCTATATTTTCCGAAATTTGGAGAATATTATTGCTTTTTGGACCTACCC
CGGTGGGGTGGAGGTCCTATAAATTAACCCATGTTCGTTAGTTAGAACGT
TAGTTACCAACTTTTCTCGAGATTGGCTCATTCAATTTTTCTGATTTTTT
GCACAAAGGTGCATTACTATAAACCCTCGAATGTGACGGAGCCCGATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTCACCGTTAAACATC
GATGCGTTTCTTAATTGCTTTCTCCGTTCCAATAGATATATAAATCGAAA
TTTAAAATTATACATTACTTCCATTAAATTGTAATTATTCGTTTTATAAA
TAGGTAGGTCCATTAAAGTATTACTTGTTATCGAACGGAATCAAATGAAA
ATCTTATTTGTGTATTCGTATCCCGATACTGGGTATTATCCATCGTACAT
TGTTTTCTTAAAGGTGAAAGAATTTGGTTAGAGGTGTGAAAAGCATGCAT
TTTGTTGGTCTGGTGAGATGACACCTCGTGCACATCCGCATCCGCATATG
AGAATCATCAATTACAAACGATACAAGAGAGTTTACAGCGGTCACTGGTG
GTAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000472	XLOC_000472	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000763-exon-sc0000005-1575043694:134229..134320	TCONS_00000763-exon-sc0000005-1575043694:134229..134320	Clytia hemisphaerica	exon
TCONS_00000763-exon-sc0000005-1575043694:132196..132435	TCONS_00000763-exon-sc0000005-1575043694:132196..132435	Clytia hemisphaerica	exon
TCONS_00000763-exon-sc0000005-1575043694:130066..130207	TCONS_00000763-exon-sc0000005-1575043694:130066..130207	Clytia hemisphaerica	exon
TCONS_00000763-exon-sc0000005-1510915933:134229..134320	TCONS_00000763-exon-sc0000005-1510915933:134229..134320	Clytia hemisphaerica	exon
TCONS_00000763-exon-sc0000005-1510915933:132196..132435	TCONS_00000763-exon-sc0000005-1510915933:132196..132435	Clytia hemisphaerica	exon
TCONS_00000763-exon-sc0000005-1510915933:130066..130207	TCONS_00000763-exon-sc0000005-1510915933:130066..130207	Clytia hemisphaerica	exon
TCONS_00000763-exon-sc0000005-1491911889:134229..134320	TCONS_00000763-exon-sc0000005-1491911889:134229..134320	Clytia hemisphaerica	exon
TCONS_00000763-exon-sc0000005-1491911889:132196..132435	TCONS_00000763-exon-sc0000005-1491911889:132196..132435	Clytia hemisphaerica	exon
TCONS_00000763-exon-sc0000005-1491911889:130066..130207	TCONS_00000763-exon-sc0000005-1491911889:130066..130207	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000005	supercontig	sc0000005:130066..134320 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133878	0	0	0	0.869886	0.713335	0	0.483415	0	0	0	0	0	0	0	0	5.4271	4.64708	0	0	6.05325	5.4929	0	2.09196	8.76809	11.5455	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00000763 vs. Swiss-Prot (Human)

BLAST of TCONS_00000763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00000763 (transcript) - C. hemisphaerica