TCONS_00000761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000761
Unique NameTCONS_00000761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000761 ID=TCONS_00000761|Name=TCONS_00000761|organism=Clytia hemisphaerica|type=transcript|length=457bp
gtaatgatgaaaatgaactACAATAGCTTTACAAATACATGGAGTAAAAA
TGAAGCGACACTTTGCGAAGTAAAGAGAGAGCGATCATGAAGACATGtta
ttctttacaaaaaaaagtttcaaaccacGACGTTGTTGGTGTCAAGTTCT
CTGCTTCGTCTACCTCCTCTCGCTCATCCAACGTATTCGAAAAAAGAGGG
ACAGGAAACTATTGATAGTTTCAActtattgatatttttcaagaGAGTGG
TTATTGCTCAACGACTTCTATATCATATGATTAGATAGATTGGACACTCT
TTATTGGTGCGAGAGGTGAAAGAATTTGGTTAGAGGTGTGAAAAGCATGC
ATTTTGTTGGTCTGGTGAGATGACACCTCGTGCACATCCGCATCCGCATA
TGAGAATCATCAATTACAAACGATACAAGAGAGTTTACAGCGGTCACTGG
TGGTAAG
Run BLAST on NCBI

transcript from alignment at sc0000005:130066..132934-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000761 ID=TCONS_00000761|Name=TCONS_00000761|organism=Clytia hemisphaerica|type=transcript|length=2869bp|location=Sequence derived from alignment at sc0000005:130066..132934- (Clytia hemisphaerica)
GTAATGATGAAAATGAACTACAATAGCTTTACAAATACATGGAGTAAAAA
TGAAGCGACACTTTGCGAAGTAAAGGTATGAAAATGAATCGATCACTTGA
ACTCGATTTGGTGCCATAACTTAACACTTTTTGAAGTATTAAAGTACTTT
TTTGACAACATTTAAGTCATCAGTTTTTATGGAATCATTGCAGAATTGTA
TACCACACTAATCTTATAAGAACATCTTTTCCTTCAAATTCTTGAAAAAT
AATTTTCAAGACTTTGTATCCAATCAGGTTTGAATCAAGGTTAAATCTTT
GAAATCAGCAAAAGTACTGGCGAAGTAAATTTGTATTTTTTGGTACGGTG
CATTATATCGAGGCTGTAAGAAAGATGTACTGAAAGGGCAACAACCCCCC
CTACGTTCTTACAGAAAAAGGTACCCCTAAAAAGACAATACATTCACAAA
AATGTTGTTGACACTTAAACAAACATTTCACTTCCTTTACCTCTTAGAGA
GAGAGCGATCATGAAGACATGTTATTCTTTACAAAAAAAAGTTTCAAACC
ACGACGTTGTTGGTGTCAAGTTCTCTGCTTCGTCTACCTCCTCTCGCTCA
TCCAACGTATTCGAAAAAAGAGGGACAGGAAACTATTGATAGTTTCAACT
TATTGATATTTTTCAAGAGAGTGGTTATTGCTCAACGACTTCTATATCAT
ATGATTAGATAGATTGGACACTCTTTATTGGTGCGAGAGGTATGCAAAAT
GTCCATCAATTCAAGAAATTCTCGGTTATGGTTTTTATAGGCCTGCTCAT
CCTCTAGCGAAAAAGGTTTCTATATAGGAAGCATATCTAGACTATGGTTT
TTATACAGGAAATTTTCTATATTTTCCGAAATTTGGAGAATATTATTGCT
TTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCCATGTTC
GTTAGTTAGAACGTTAGTTACCAACTTTTCTCGAGATTGGCTCATTCAAT
TTTTCTGATTTTTTGCACAAAGGTGCATTACTATAAACCCTCGAATGTGA
CGGAGCCCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CACCGTTAAACATCGATGCGTTTCTTAATTGCTTTCTCCGTTCCAATAGA
TATATAAATCGAAATTTAAAATTATACATTACTTCCATTAAATTGTAATT
ATTCGTTTTATAAATAGGTAGGTCCATTAAAGTATTACTTGTTATCGAAC
GGAATCAAATGAAAATCTTATTTGTGTATTCGTATCCCGATACTGGGTAT
TATCCATCGTACATTGTTTTCTTAAAGGTGAAAGAATTTGGTTAGAGGTG
TGAAAAGCATGCATTTTGTTGGTCTGGTGAGATGACACCTCGTGCACATC
CGCATCCGCATATGAGAATCATCAATTACAAACGATACAAGAGAGTTTAC
AGCGGTCACTGGTGGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000472XLOC_000472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000761-exon-sc0000005-1575043694:132860..132934TCONS_00000761-exon-sc0000005-1575043694:132860..132934Clytia hemisphaericaexon
TCONS_00000761-exon-sc0000005-1575043694:132196..132435TCONS_00000761-exon-sc0000005-1575043694:132196..132435Clytia hemisphaericaexon
TCONS_00000761-exon-sc0000005-1575043694:130066..130207TCONS_00000761-exon-sc0000005-1575043694:130066..130207Clytia hemisphaericaexon
TCONS_00000761-exon-sc0000005-1510915933:132860..132934TCONS_00000761-exon-sc0000005-1510915933:132860..132934Clytia hemisphaericaexon
TCONS_00000761-exon-sc0000005-1510915933:132196..132435TCONS_00000761-exon-sc0000005-1510915933:132196..132435Clytia hemisphaericaexon
TCONS_00000761-exon-sc0000005-1510915933:130066..130207TCONS_00000761-exon-sc0000005-1510915933:130066..130207Clytia hemisphaericaexon
TCONS_00000761-exon-sc0000005-1491911889:132860..132934TCONS_00000761-exon-sc0000005-1491911889:132860..132934Clytia hemisphaericaexon
TCONS_00000761-exon-sc0000005-1491911889:132196..132435TCONS_00000761-exon-sc0000005-1491911889:132196..132435Clytia hemisphaericaexon
TCONS_00000761-exon-sc0000005-1491911889:130066..130207TCONS_00000761-exon-sc0000005-1491911889:130066..130207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:130066..132934 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.60275	0.746603	0.144934	0.666919	3.61538	3.85342	2.16618	4.20341	0	0.00394078	2.28107	1.11392	0.499538	0	0.656098	0.00147017	0	0	0	0	1.5878	0.970632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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