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TCONS_00000754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000754
Unique NameTCONS_00000754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000754 ID=TCONS_00000754|Name=TCONS_00000754|organism=Clytia hemisphaerica|type=transcript|length=1938bp
TCACATACAAAAAGTGCCAGTTGTcagtgttttgtttttacaattttgta
aacatgtCTGTGATGTTTTAGATAAGTTCCATAAATCCAAAGTAGTAGCT
AaagattttgtttgtaatttattACAATGGAATTTAATCGTATAATTTGG
GAAAATGCttttttgaaataatctttTGTCTTTCAGAATGAAAAAGAATC
ATCAGATCTTAGTAACCATAACCAGTGAATGACATTATATCAGATGAGCT
CATTATTACTAATTATTCTAATTTTATATTATCAGTGGGAAAACATTATC
ATAATGGATTTGATGTGATNGTTGGAGAAGGATATTCTTTCCCACTGGAC
GGACAATCATAATCAAGACTCTTGACGGACAATCAAGAGTACAAGACACc
gaccggacatgaccagtccggtgcgtccggtgtttcttaattttttgttt
cataaatgtccggcgtccaattccctgtatgcaacactgagctgacaccg
gacttatagaccttttttcaaagaggccaccctgttgaataattatgtag
tccagcagaaaaacaatgataaaaccatcatgcataattattacaatatg
catgatgatacagtaattatgcatggctctatcattgttttcatggctgg
actacataattattcaacaggatgtcctctttgaaaaaaggtctattgcg
tccggtgtagcgaaaggatactttttgccaccggacgaataaccggacag
tccggtgcgtcgggcGGCAGGGTCCTTCCACCAGCTGCAACGTTGCTTGA
AGGTACTGGTACATGTATGAACAGAACATAAAACAACAAACTGACCGAAA
ACCACATCAATAATCAGCCAAAAATTGTCTGACTGTTAAAATGAAGGAAG
ATTGTGCAGCAGCTCTTAAAAACTCCCATTTTTGCTAGTCCAGGGTCTGG
AGCTCAACTgttttttgcctttgataatcTGATGATGGAAAAAATAGAGA
TAGATTTATATAGATTTTCTGACTACATTTTTGCAGCTTTTCAGGGGTGC
TTATTGAATGATAATGATTCCCCCCTGTTGTCAAATGCATCcactgaaat
ttctttttttcttctcagttcttctcattaaaatttattatttaaaattt
gattttaaacaCCTAAAAAAGGCTGCTAACATGATTGTCCGATATTCTCG
TTCTTGTTCTTCTCGTTCTTGTCAAATATATTTTCAGCATATGTAACTTC
TTTTGTATTGGCAACTAAATGCAGTTTACACCACGAAGTCGGGTaatttg
catcagtggaggctaacatgcatagccctcaaatgactgaccaatcaaga
tcaaagcagcaaaatttcaaaacaaatgaactacgcagctctgctcgcag
ctctactctaccatttttatttttatttaactttgtataAGGAAAAAATT
ACTACACTTGATCATTCAATGACAAATTGATAACCAATCAATTGATTCCT
ATAATCAATAGGACGACCATCAAAAAACTATTCTGTTTGCAACTGTTTGC
aacaggtgttaaaaatgcatgcaggCGGGCAGACAGTCTTTCGGAAAGAT
TCCCCAGGGATTCCCTCTGCGCCAGGAACTGGAACGCTTgaactttctga
aaaatagcttttttgaaataatctttTGTCTTTCAGAATGAAAAAGAATC
ATCAGATCTTAGTAACCATAACCAGTaaaatctAAATGGAGAGGAGTACA
AATCATGAGCGTGATAGAGATCTTGAATTGGAAGAAGTACAAGGAATTGA
GATTGCAGAAGGAAAGAAGGaaaactaaacataaaaaactgaaagaaaga
GTGATTCGTGTGAAAAGAAATGCTGATGGTTCAAGAGCATACCCGTTTGC
TGGACAAAGAAAGAAGTGTAGAAAAAATTTACAAGAAG
Run BLAST on NCBI

transcript from alignment at sc0000005:10833..13193-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000754 ID=TCONS_00000754|Name=TCONS_00000754|organism=Clytia hemisphaerica|type=transcript|length=2361bp|location=Sequence derived from alignment at sc0000005:10833..13193- (Clytia hemisphaerica)
TCACATACAAAAAGTGCCAGTTGTCAGTGTTTTGTTTTTACAATTTTGTA AACATGTCTGTGATGTTTTAGATAAGTTCCATAAATCCAAAGTAGTAGCT AAAGATTTTGTTTGTAATTTATTACAATGGAATTTAATCGTATAATTTGG GAAAATGCTTTTTTGAAATAATCTTTTGTCTTTCAGAATGAAAAAGAATC ATCAGATCTTAGTAACCATAACCAGTGAATGACATTATATCAGATGAGCT CATTATTACTAATTATTCTAATTTTATATTATCAGTGGGAAAACATTATC ATAATGGATTTGATGTGATNGTTGGAGAAGGATATTCTTTCCCACTGGAC GGACAATCATAATCAAGACTCTTGACGGACAATCAAGAGTACAAGACACC GACCGGACATGACCAGTCCGGTGCGTCCGGTGTTTCTTAATTTTTTGTTT CATAAATGTCCGGCGTCCAATTCCCTGTATGCAACACTGAGCTGACACCG GACTTATAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAATTATGTAG TCCAGCAGAAAAACAATGATAAAACCATCATGCATAATTATTACAATATG CATGATGATACAGTAATTATGCATGGCTCTATCATTGTTTTCATGGCTGG ACTACATAATTATTCAACAGGATGTCCTCTTTGAAAAAAGGTCTATTGCG TCCGGTGTAGCGAAAGGATACTTTTTGCCACCGGACGAATAACCGGACAG TCCGGTGCGTCGGGCGGCAGGGTCCTTCCACCAGCTGCAACGTTGCTTGA AGGTACTGGTACATGTATGAACAGAACATAAAACAACAAACTGACCGAAA ACCACATCAATAATCAGCCAAAAATTGTCTGACTGTTAAAATGAAGGAAG ATTGTGCAGCAGCTCTTAAAAACTCCCATTTTTGCTAGTCCAGGGTCTGG AGCTCAACTGTTTTTTGCCTTTGATAATCTGATGATGGAAAAAATAGAGA TAGATTTATATAGATTTTCTGACTACATTTTTGCAGCTTTTCAGGGGTGC TTATTGAATGATAATGATTCCCCCCTGTTGTCAAATGCATCCACTGAAAT TTCTTTTTTTCTTCTCAGTTCTTCTCATTAAAATTTATTATTTAAAATTT GATTTTAAACACCTAAAAAAGGCTGCTAACATGATTGTCCGATATTCTCG TTCTTGTTCTTCTCGTTCTTGTCAAATATATTTTCAGCATATGTAACTTC TTTTGTATTGGCAACTAAATGCAGTTTACACCACGAAGTCGGGTAATTTG CATCAGTGGAGGCTAACATGCATAGCCCTCAAATGACTGACCAATCAAGA TCAAAGCAGCAAAATTTCAAAACAAATGAACTACGCAGCTCTGCTCGCAG CTCTACTCTACCATTTTTATTTTTATTTAACTTTGTATAAGGAAAAAATT ACTACACTTGATCATTCAATGACAAATTGATAACCAATCAATTGATTCCT ATAATCAATAGGACGACCATCAAAAAACTATTCTGTTTGCAACTGTTTGC AACAGGTGTTAAAAATGCATGCAGGCGGGCAGACAGTCTTTCGGAAAGAT TCCCCAGGGATTCCCTCTGCGCCAGGAACTGGAACGCTTGAACTTTCTGA AAAATAGCTTTTTTGAAATAATCTTTTGTCTTTCAGAATGAAAAAGAATC ATCAGATCTTAGTAACCATAACCAGTGTATGACATTATATCAGATGAGCT CACTATTACTAATTATTCTAATTTTATATTATCAGTGGGAAAACATTATC ATAATGGATTTGATGTGATATTTACAGATAAATAGAAAGTTTTGAATAAA GAACTTTAAAGTTTATCTTGACATCAAGATTTCCCAAAGTTTAAGTAAAC ATCTCTAAAATTAAATCATTTCCATCTGCATAATAACTCATTATTTTGCT TGTACTGTGTGTACTGAAGGTACTTCAATATTTTACTTTTCTTTCTTTAA GAAAATCTAAATGGAGAGGAGTACAAATCATGAGCGTGATAGAGATCTTG GTAAGTTAATGTGTATTCTTTTCAATAGTTTTTTTTAATGCTTAACTTCA ACTTATTGTTCTCCTATCTAAACTTTTAGAAAGCTTGTATGTACATGGCG TGGTTGCCTTATCGTTGAACAGCATTTCTTTATTTTTAAAATCCTTAGAA TTGGAAGAAGTACAAGGAATTGAGATTGCAGAAGGAAAGAAGGAAAACTA AACATAAAAAACTGAAAGAAAGAGTGATTCGTGTGAAAAGAAATGCTGAT GGTTCAAGAGCATACCCGTTTGCTGGACAAAGAAAGAAGTGTAGAAAAAA TTTACAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000469XLOC_000469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000754-exon-sc0000005-1575043694:11468..13193TCONS_00000754-exon-sc0000005-1575043694:11468..13193Clytia hemisphaericaexon
TCONS_00000754-exon-sc0000005-1575043694:11144..11192TCONS_00000754-exon-sc0000005-1575043694:11144..11192Clytia hemisphaericaexon
TCONS_00000754-exon-sc0000005-1575043694:10833..10995TCONS_00000754-exon-sc0000005-1575043694:10833..10995Clytia hemisphaericaexon
TCONS_00000754-exon-sc0000005-1510915933:11468..13193TCONS_00000754-exon-sc0000005-1510915933:11468..13193Clytia hemisphaericaexon
TCONS_00000754-exon-sc0000005-1510915933:11144..11192TCONS_00000754-exon-sc0000005-1510915933:11144..11192Clytia hemisphaericaexon
TCONS_00000754-exon-sc0000005-1510915933:10833..10995TCONS_00000754-exon-sc0000005-1510915933:10833..10995Clytia hemisphaericaexon
TCONS_00000754-exon-sc0000005-1491911889:11468..13193TCONS_00000754-exon-sc0000005-1491911889:11468..13193Clytia hemisphaericaexon
TCONS_00000754-exon-sc0000005-1491911889:11144..11192TCONS_00000754-exon-sc0000005-1491911889:11144..11192Clytia hemisphaericaexon
TCONS_00000754-exon-sc0000005-1491911889:10833..10995TCONS_00000754-exon-sc0000005-1491911889:10833..10995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:10833..13193 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.440465 0.297536 0.726498 0.650163 0.650725 0.503484 0.411999 0.521777 0.58412 0.112022 0.757252 0.182923 1.29438 1.24438 0.185244 0.204503 0.12294 0.12623 0.143141 0.18706 0.215181 0.139815 0.245375 0.0954642 0.27358 0.58275 0.331922 0.556014 0 0.207678
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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