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TCONS_00000752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000752
Unique NameTCONS_00000752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000752 ID=TCONS_00000752|Name=TCONS_00000752|organism=Clytia hemisphaerica|type=transcript|length=477bp
AGTTGAGTAACCTTACAAACCTTATTAACCATGACCTGCTTAAAAAACAC
CCTAAAAAGAAGACGTGGAGTGACCGAAAGAAAGATGAAGAGGGATACTG
GAAAGAAGAGAGAGATTCCATTTTTTCGGCTGTTGTAGAATCCTATTCCA
ATGCGGGACTGTGCCATTGTTGCAATGAAAATCCGATTTCTATAAAGTGT
TTTGACTGTTACGAAAAAAATCTTTGTACAGTTTGTGATGAAAAGCAACA
CTCATTTAATACTCTGCACAATCGTATTGGCTATGTAGATGGATACAGAA
GATCAATGATGCCATCAGAAGTTCTTGATGATAACTTAACCATAAATGAC
AAGTGCAGTATGGTACCCTTATTGCCAAAGGCTTGCCCTGTTTGCAGTGG
AAAAGATATCACGAGAATTGCAGGAGATTACATCAATGTTGTCTCATTAA
CAGctattataaatttttcaatttcag
Run BLAST on NCBI

transcript from alignment at sc0000005:8623..9296-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000752 ID=TCONS_00000752|Name=TCONS_00000752|organism=Clytia hemisphaerica|type=transcript|length=674bp|location=Sequence derived from alignment at sc0000005:8623..9296- (Clytia hemisphaerica)
AGTTGAGTAACCTTACAAACCTTATTAACCATGACCTGCTTAAAAAACAC CCTAAAAAGAAGACGTGGAGTGACCGAAAGAAAGATGAAGAGGGATACTG GAAAGAAGAGAGAGATTCCATTTTTTCGGCTGTTGTAGAATCCTATTCCA ATGCGGGACTGTGCCATTGTTGCAATGAAAATCCGATTTCTATAAAGTGT TTTGACTGTTACGAAAAAAATCTTTGTACAGTTTGTGATGAAAAGCAACA CTCATTTAATACTCTGCACAATCGTATTGGCTATGTAGATGGATACAGAA GATCAATGATGCCATCAGAAGTTCTTGATGATAACTTAACCATAAATGAC AAGTGTAATGGTTTAAAATATTACAATTTTCACGTATGATAGATCTACAT TAAAAGCTACAGTAACATACTTTGATTTTGTTTAAAATTAGTAAATTTAG ATATTGTTAACAAATTGATTTTCTCTTCTTTTTAATTATAGGCAGTATGG TACCCTTATTGCCAAAGGCTTGCCCTGTTTGCAGTGGAAAAGATATCACG AGAATTGCAGGAGATTACATCAATGTTGTCTCATTAACAGGTGATTGAGT GATTGTATTTGAAAAATTTTTGAAACCTATCCTGCAAAAATCTTTTCTAG CTATTATAAATTTTTCAATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000468XLOC_000468Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000752-exon-sc0000005-1575043694:8943..9296TCONS_00000752-exon-sc0000005-1575043694:8943..9296Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1575043694:8707..8805TCONS_00000752-exon-sc0000005-1575043694:8707..8805Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1575043694:8623..8646TCONS_00000752-exon-sc0000005-1575043694:8623..8646Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1510915933:8943..9296TCONS_00000752-exon-sc0000005-1510915933:8943..9296Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1510915933:8707..8805TCONS_00000752-exon-sc0000005-1510915933:8707..8805Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1510915933:8623..8646TCONS_00000752-exon-sc0000005-1510915933:8623..8646Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1491911889:8943..9296TCONS_00000752-exon-sc0000005-1491911889:8943..9296Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1491911889:8707..8805TCONS_00000752-exon-sc0000005-1491911889:8707..8805Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1491911889:8623..8646TCONS_00000752-exon-sc0000005-1491911889:8623..8646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:8623..9296 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.198981 0 0.149887 0 1.79634 2.77479 1.09562 4.18804 0.878257 3.59837 4.03228 1.86177 1.4676 1.85534 0.0823617 0 0 0.203716 0.163285 0.441768 0 0 0 0 0.84136 2.0752 0.181519 0.193722 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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