TCONS_00000752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000752
Unique NameTCONS_00000752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000752 ID=TCONS_00000752|Name=TCONS_00000752|organism=Clytia hemisphaerica|type=transcript|length=477bp
AGTTGAGTAACCTTACAAACCTTATTAACCATGACCTGCTTAAAAAACAC
CCTAAAAAGAAGACGTGGAGTGACCGAAAGAAAGATGAAGAGGGATACTG
GAAAGAAGAGAGAGATTCCATTTTTTCGGCTGTTGTAGAATCCTATTCCA
ATGCGGGACTGTGCCATTGTTGCAATGAAAATCCGATTTCTATAAAGTGT
TTTGACTGTTACGAAAAAAATCTTTGTACAGTTTGTGATGAAAAGCAACA
CTCATTTAATACTCTGCACAATCGTATTGGCTATGTAGATGGATACAGAA
GATCAATGATGCCATCAGAAGTTCTTGATGATAACTTAACCATAAATGAC
AAGTGCAGTATGGTACCCTTATTGCCAAAGGCTTGCCCTGTTTGCAGTGG
AAAAGATATCACGAGAATTGCAGGAGATTACATCAATGTTGTCTCATTAA
CAGctattataaatttttcaatttcag
Run BLAST on NCBI

transcript from alignment at sc0000005:8623..9296-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000752 ID=TCONS_00000752|Name=TCONS_00000752|organism=Clytia hemisphaerica|type=transcript|length=674bp|location=Sequence derived from alignment at sc0000005:8623..9296- (Clytia hemisphaerica)
AGTTGAGTAACCTTACAAACCTTATTAACCATGACCTGCTTAAAAAACAC
CCTAAAAAGAAGACGTGGAGTGACCGAAAGAAAGATGAAGAGGGATACTG
GAAAGAAGAGAGAGATTCCATTTTTTCGGCTGTTGTAGAATCCTATTCCA
ATGCGGGACTGTGCCATTGTTGCAATGAAAATCCGATTTCTATAAAGTGT
TTTGACTGTTACGAAAAAAATCTTTGTACAGTTTGTGATGAAAAGCAACA
CTCATTTAATACTCTGCACAATCGTATTGGCTATGTAGATGGATACAGAA
GATCAATGATGCCATCAGAAGTTCTTGATGATAACTTAACCATAAATGAC
AAGTGTAATGGTTTAAAATATTACAATTTTCACGTATGATAGATCTACAT
TAAAAGCTACAGTAACATACTTTGATTTTGTTTAAAATTAGTAAATTTAG
ATATTGTTAACAAATTGATTTTCTCTTCTTTTTAATTATAGGCAGTATGG
TACCCTTATTGCCAAAGGCTTGCCCTGTTTGCAGTGGAAAAGATATCACG
AGAATTGCAGGAGATTACATCAATGTTGTCTCATTAACAGGTGATTGAGT
GATTGTATTTGAAAAATTTTTGAAACCTATCCTGCAAAAATCTTTTCTAG
CTATTATAAATTTTTCAATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000468XLOC_000468Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000752-exon-sc0000005-1575043694:8943..9296TCONS_00000752-exon-sc0000005-1575043694:8943..9296Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1575043694:8707..8805TCONS_00000752-exon-sc0000005-1575043694:8707..8805Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1575043694:8623..8646TCONS_00000752-exon-sc0000005-1575043694:8623..8646Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1510915933:8943..9296TCONS_00000752-exon-sc0000005-1510915933:8943..9296Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1510915933:8707..8805TCONS_00000752-exon-sc0000005-1510915933:8707..8805Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1510915933:8623..8646TCONS_00000752-exon-sc0000005-1510915933:8623..8646Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1491911889:8943..9296TCONS_00000752-exon-sc0000005-1491911889:8943..9296Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1491911889:8707..8805TCONS_00000752-exon-sc0000005-1491911889:8707..8805Clytia hemisphaericaexon
TCONS_00000752-exon-sc0000005-1491911889:8623..8646TCONS_00000752-exon-sc0000005-1491911889:8623..8646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:8623..9296 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (4.18804 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.198981	0	0.149887	0	1.79634	2.77479	1.09562	4.18804	0.878257	3.59837	4.03228	1.86177	1.4676	1.85534	0.0823617	0	0	0.203716	0.163285	0.441768	0	0	0	0	0.84136	2.0752	0.181519	0.193722	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450Sequence
Match NameE-valueIdentityDescription
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