TCONS_00000751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000751
Unique NameTCONS_00000751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000751 ID=TCONS_00000751|Name=TCONS_00000751|organism=Clytia hemisphaerica|type=transcript|length=799bp
cttgttttcatccaattttctttatgatttcATTTGTAGAAATTGGAGAG
TTGAGTAACCTTACAAACCTTATTAACCATGACCTGCTTAAAAAACACCC
TAAAAAGAAGACGTGGAGTGACCGAAAGAAAGATGAAGAGGGATACTGGA
AAGAAGAGAGAGATTCCATTTTTTCGGCTGTTGTAGAATCCTATTCCAAT
GCGGGACTGTGCCATTGTTGCAATGAAAATCCGATTTCTATAAAGTGTTT
TGACTGTTACGAAAAAAATCTTTGTACAGTTTGTGATGAAAAGCAACACT
CATTTAATACTCTGCACAATCGTATTGGCTATGTAGATGGATACAGAAGA
TCAATGATGCCATCAGAAGTTCTTGATGATAACTTAACCATAAATGACAA
GTGCAGTATGGTACCCTTATTGCCAAAGGCTTGCCCTGTTTGCAGTGGAA
AAGATATCACGAGAATTGCAGGAGATTACATCAATGTTGTCTCATTAACA
GggaAATGCTTATTGCGTACGTTCTCAACAAGATGCCTTGGGTGTGGGGA
ATTGAACAATCCTTTTACNGTGTGAAAAGAAATGCTGATGGTTCAAGAGC
ATACCCGTTTGCTGGACAAAGAAAGAAGTGTAGAAAAAATTTACAAGAAG
ATCCAGATCAACAACCAGATTCTTCTGATACAGAATGTGATATTGTGCAT
ATGCATGACGATCCCTCATCTCCATCAGGAGGTACGTTATAGAGAATCTT
TGTTAGGTGATGTATCTTATAATTTAGAATCTTTGACTTTTACTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00000751-protein

>TCONS_00000751-protein ID=TCONS_00000751-protein|Name=TCONS_00000751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
CFHPIFFMISFVEIGELSNLTNLINHDLLKKHPKKKTWSDRKKDEEGYWK
EERDSIFSAVVESYSNAGLCHCCNENPISIKCFDCYEKNLCTVCDEKQHS
FNTLHNRIGYVDGYRRSMMPSEVLDDNLTINDKCSMVPLLPKACPVCSGK
DITRIAGDYINVVSLTGKCLLRTFSTRCLGCGELNNPFXV
Run BLAST on NCBI

transcript from alignment at sc0000005:8187..9344-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000751 ID=TCONS_00000751|Name=TCONS_00000751|organism=Clytia hemisphaerica|type=transcript|length=1158bp|location=Sequence derived from alignment at sc0000005:8187..9344- (Clytia hemisphaerica)
CTTGTTTTCATCCAATTTTCTTTATGATTTCATTTGTAGAAATTGGAGAG
TTGAGTAACCTTACAAACCTTATTAACCATGACCTGCTTAAAAAACACCC
TAAAAAGAAGACGTGGAGTGACCGAAAGAAAGATGAAGAGGGATACTGGA
AAGAAGAGAGAGATTCCATTTTTTCGGCTGTTGTAGAATCCTATTCCAAT
GCGGGACTGTGCCATTGTTGCAATGAAAATCCGATTTCTATAAAGTGTTT
TGACTGTTACGAAAAAAATCTTTGTACAGTTTGTGATGAAAAGCAACACT
CATTTAATACTCTGCACAATCGTATTGGCTATGTAGATGGATACAGAAGA
TCAATGATGCCATCAGAAGTTCTTGATGATAACTTAACCATAAATGACAA
GTGTAATGGTTTAAAATATTACAATTTTCACGTATGATAGATCTACATTA
AAAGCTACAGTAACATACTTTGATTTTGTTTAAAATTAGTAAATTTAGAT
ATTGTTAACAAATTGATTTTCTCTTCTTTTTAATTATAGGCAGTATGGTA
CCCTTATTGCCAAAGGCTTGCCCTGTTTGCAGTGGAAAAGATATCACGAG
AATTGCAGGAGATTACATCAATGTTGTCTCATTAACAGGTGATTGAGTGA
TTGTATTTGAAAAATTTTTGAAACCTATCCTGCAAAAATCTTTTCTAGCT
ATTATAAATTTTTCAATTTCAGGGAAATGCTTATTGCGTACGTTCTCAAC
AAGATGCCTTGGGTGTGGGGAATTGAACAATCCTTTTACNGTGTGAAAAG
AAATGCTGATGGTTCAAGAGCATACCCGTTTGCTGGACAAAGAAAGAAGT
GTAGAAAAAATTTACAAGAAGGTTTGTTATAATGTTGTGTTTATTTATTA
TAACATCTGAACTTTATTAGCCTTATTTCATTATGTTATGTTTAAAGCAA
CTTTCGGGAAATATACCTTATCTGTATAATACAATTTTATAAATTTTTCA
TTCTTCCAGATCCAGATCAACAACCAGATTCTTCTGATACAGAATGTGAT
ATTGTGCATATGCATGACGATCCCTCATCTCCATCAGGAGGTACGTTATA
GAGAATCTTTGTTAGGTGATGTATCTTATAATTTAGAATCTTTGACTTTT
ACTTTTTC

Coding sequence (CDS) from alignment at sc0000005:8187..9344-

>TCONS_00000751 ID=TCONS_00000751|Name=TCONS_00000751|organism=Clytia hemisphaerica|type=CDS|length=1719bp|location=Sequence derived from alignment at sc0000005:8187..9344- (Clytia hemisphaerica)
GGAAATGCTTATTGCGTACGTTCTCAACAAGATGCCTTGGGTGTGGGGAA
TTGAACAATCCTTTTACNGTGTGAGCAGTATGGTACCCTTATTGCCAAAG
GCTTGCCCTGTTTGCAGTGGAAAAGATATCACGAGAATTGCAGGAGATTA
CATCAATGTTGTCTCATTAACAGTGTTTTCATCCAATTTTCTTTATGATT
TCATTTGTAGAAATTGGAGAGTTGAGTAACCTTACAAACCTTATTAACCA
TGACCTGCTTAAAAAACACCCTAAAAAGAAGACGTGGAGTGACCGAAAGA
AAGATGAAGAGGGATACTGGAAAGAAGAGAGAGATTCCATTTTTTCGGCT
GTTGTAGAATCCTATTCCAATGCGGGACTGTGCCATTGTTGCAATGAAAA
TCCGATTTCTATAAAGTGTTTTGACTGTTACGAAAAAAATCTTTGTACAG
TTTGTGATGAAAAGCAACACTCATTTAATACTCTGCACAATCGTATTGGC
TATGTAGATGGATACAGAAGATCAATGATGCCATCAGAAGTTCTTGATGA
TAACTTAACCATAAATGACAAGTGGAAATGCTTATTGCGTACGTTCTCAA
CAAGATGCCTTGGGTGTGGGGAATTGAACAATCCTTTTACNGTGTGAGCA
GTATGGTACCCTTATTGCCAAAGGCTTGCCCTGTTTGCAGTGGAAAAGAT
ATCACGAGAATTGCAGGAGATTACATCAATGTTGTCTCATTAACAGTGTT
TTCATCCAATTTTCTTTATGATTTCATTTGTAGAAATTGGAGAGTTGAGT
AACCTTACAAACCTTATTAACCATGACCTGCTTAAAAAACACCCTAAAAA
GAAGACGTGGAGTGACCGAAAGAAAGATGAAGAGGGATACTGGAAAGAAG
AGAGAGATTCCATTTTTTCGGCTGTTGTAGAATCCTATTCCAATGCGGGA
CTGTGCCATTGTTGCAATGAAAATCCGATTTCTATAAAGTGTTTTGACTG
TTACGAAAAAAATCTTTGTACAGTTTGTGATGAAAAGCAACACTCATTTA
ATACTCTGCACAATCGTATTGGCTATGTAGATGGATACAGAAGATCAATG
ATGCCATCAGAAGTTCTTGATGATAACTTAACCATAAATGACAAGTGGAA
ATGCTTATTGCGTACGTTCTCAACAAGATGCCTTGGGTGTGGGGAATTGA
ACAATCCTTTTACNGTGTGAGCAGTATGGTACCCTTATTGCCAAAGGCTT
GCCCTGTTTGCAGTGGAAAAGATATCACGAGAATTGCAGGAGATTACATC
AATGTTGTCTCATTAACAGTGTTTTCATCCAATTTTCTTTATGATTTCAT
TTGTAGAAATTGGAGAGTTGAGTAACCTTACAAACCTTATTAACCATGAC
CTGCTTAAAAAACACCCTAAAAAGAAGACGTGGAGTGACCGAAAGAAAGA
TGAAGAGGGATACTGGAAAGAAGAGAGAGATTCCATTTTTTCGGCTGTTG
TAGAATCCTATTCCAATGCGGGACTGTGCCATTGTTGCAATGAAAATCCG
ATTTCTATAAAGTGTTTTGACTGTTACGAAAAAAATCTTTGTACAGTTTG
TGATGAAAAGCAACACTCATTTAATACTCTGCACAATCGTATTGGCTATG
TAGATGGATACAGAAGATCAATGATGCCATCAGAAGTTCTTGATGATAAC
TTAACCATAAATGACAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000468XLOC_000468Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000751-proteinTCONS_00000751-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000751-exon-sc0000005-1575043694:8943..9344TCONS_00000751-exon-sc0000005-1575043694:8943..9344Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1575043694:8707..8805TCONS_00000751-exon-sc0000005-1575043694:8707..8805Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1575043694:8474..8622TCONS_00000751-exon-sc0000005-1575043694:8474..8622Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1575043694:8187..8335TCONS_00000751-exon-sc0000005-1575043694:8187..8335Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1510915933:8943..9344TCONS_00000751-exon-sc0000005-1510915933:8943..9344Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1510915933:8707..8805TCONS_00000751-exon-sc0000005-1510915933:8707..8805Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1510915933:8474..8622TCONS_00000751-exon-sc0000005-1510915933:8474..8622Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1510915933:8187..8335TCONS_00000751-exon-sc0000005-1510915933:8187..8335Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1491911889:8943..9344TCONS_00000751-exon-sc0000005-1491911889:8943..9344Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1491911889:8707..8805TCONS_00000751-exon-sc0000005-1491911889:8707..8805Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1491911889:8474..8622TCONS_00000751-exon-sc0000005-1491911889:8474..8622Clytia hemisphaericaexon
TCONS_00000751-exon-sc0000005-1491911889:8187..8335TCONS_00000751-exon-sc0000005-1491911889:8187..8335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:8187..9344 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (5.07068 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.330538	0.219576	0	0	3.75872	2.11802	2.9415	2.40081	4.1274	3.27514	2.46134	2.84846	4.74668	5.07068	0	0.0881528	0	0	0	0	0.088824	0	0	0	1.20318	2.77513	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700Sequence
Match NameE-valueIdentityDescription
back to top