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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000745 ID=TCONS_00000745|Name=TCONS_00000745|organism=Clytia hemisphaerica|type=transcript|length=5733bpRun BLAST on NCBI transcript from alignment at sc0000005:1315586..1330987+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000745 ID=TCONS_00000745|Name=TCONS_00000745|organism=Clytia hemisphaerica|type=transcript|length=15402bp|location=Sequence derived from alignment at sc0000005:1315586..1330987+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000745 vs. Swiss-Prot (Human)
Match: ATP7A (Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3) HSP 1 Score: 956.436 bits (2471), Expect = 0.000e+0 Identity = 532/1074 (49.53%), Postives = 706/1074 (65.74%), Query Frame = 2
Query: 29 TENVIISVDGMVCMSCVNSIQDVISQRDGVTSIKVSLEDEEAXNVTVSHLSKL-A*RTKKQSIEEMGFDAYLESTKLKETYLSNTSLDDLSVTYTKKGXXXXXXXXXXXXXXXXXXXXVLSPGIQAMSAIDMEATK---KSFFHVTGMSCSSCVGKIERELKKKTGVYNVTVGLLAQKAEVLYDPDETNEETLKNHIEALGFGASVLQNHNLKERTVQFEIFGFEKGVSSLYLIENSILRLNGILDISILQDGTHITCTYDPTECGPRDIKDSIEKLGFQARLDTNQKEDDFLSHTKEINQWKKSFLFSLIFGLPVLIITFTYMALMAYGIHDLH----------------------VIPGLSLENLVVFTLCSIVQILGGRRFYVSAYRSLSHGSANMDVLIALATTVSYVYSVIVLAIAMVEKLDHSPKTFFETPPMLFTFISLGRWLEHIAKRKTSEALNRLLSLQPTEALLVTLEKGSMQILSEEQIDVALVQTGDILLVKPGSKIPCDGKVISGRTSVNESLITGEAMPVVKEVGDSVIGGTVNQVGAVLIQATHVGQDSALSQIVKLVEDAQTSKAPIQRVADTIASVFVPIIVVLSMITLTVWIVIGYQYFEWVHTHDHSSLHGHN------EIIIQFAFRCAISVLCIACPCALGLATPTAVMVGTGVGALNGILIKGGEPLELAHKIKTVVFDKTGTLTIGKPQVVATKIFAEGLSLQWKEFMAIAGTAEMKSEHPLGIALKDYVIENLGSHSLGDADDFEGFPGKGLKCTVTNID----------ISNTAPDQSTVDIEVSG--IPVDKVNVPKPNIGSIRSKKRYEVLIGTRLFMFDNSIVISDDVEQIMQSHERQGRTSVLIAVDNHICGLVAFSDSIKEDARKAIITLKKMGMKVVMLTGDNEKTAEAIGRQVNVDKIYAKVLPSNKVDKIKMFQRNGDVVAMVGDGINDSPALAQADVGIAVGTGTDVAVEAADVVLIKNNLMDVVAAIDLSRKTVRKIKTNFIFALIYNLIGIPIAAGVFMPLNFVLKPWXXXXXXXXXXXXXXXXXXXXKTYKKPQYD 3118
T+ +I++DGM C SCV SI+ VIS++ GV SI+VSL + N TV + L + T + +IE+MGFDA L T ++ S + +T T + + G+ + D E K K + VTGM+C+SCV IER L+++ G+Y++ V L+A KAEV Y+P + I LGFGA+V++N + + ++ + G S ++ IE+S+ + GIL S+ YDP GPRDI +IE LGF+A L + L H +EI QW++SFL SL F +PV+ + YM +M + LH ++PGLS+ NL+ F LC VQ GG FY+ AY++L H +ANMDVLI LATT+++ YS+I+L +AM E+ +P TFF+TPPMLF FI+LGRWLEHIAK KTSEAL +L+SLQ TEA +VTL+ ++ +LSEEQ+DV LVQ GDI+ V PG K P DG+VI G + V+ESLITGEAMPV K+ G +VI G++NQ G++LI ATHVG D+ LSQIVKLVE+AQTSKAPIQ+ AD ++ FVP IV +S+ TL VWIVIG+ FE V T+ G+N E II+FAF+ +I+VLCIACPC+LGLATPTAVMVGTGVGA NGILIKGGEPLE+AHK+K VVFDKTGT+T G P V K+ E + + +AI GTAE SEHPLG A+ Y + L + +LG DF+ PG G+ C VTNI+ N + S V I+ S + I + + ++Y+VLIG R +M N +VI++DV M HER+GRT+VL+AVD+ +CGL+A +D++K +A AI LK MG++VV++TGDN KTA +I QV + K++A+VLPS+KV K+K Q G VAMVGDGINDSPALA A+VGIA+GTGTDVA+EAADVVLI+N+L+DVVA+IDLSR+TV++I+ NF+FALIYNL+GIPIAAGVFMP+ VL+PWM S AMA SSVSVV SSL LK Y+KP Y+
Sbjct: 376 TQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANS---NGTVEYDPLLTSPETLRGAIEDMGFDATLSDTNEPLVVIAQPSSEMPLLTSTNE---------------------FYTKGMTPVQ--DKEEGKNSSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIENADEGDGVLELVVRGM-TCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEASLVKKDRSASHLDHKREIRQWRRSFLVSLFFCIPVMGL-MIYMMVMDHHFATLHHNQNMSKEEMINLHSSMFLERQILPGLSVMNLLSFLLCVPVQFFGGWYFYIQAYKALKHKTANMDVLIVLATTIAFAYSLIILLVAMYERAKVNPITFFDTPPMLFVFIALGRWLEHIAKGKTSEALAKLISLQATEATIVTLDSDNI-LLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLSGYFVPFIVFVSIATLLVWIVIGFLNFEIVETY----FPGYNRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHPLGTAITKYCKQELDTETLGTCIDFQVVPGCGISCKVTNIEGLLHKNNWNIEDNNIKNASLVQIDASNEQSSTSSSMIIDAQISNALNAQQYKVLIGNREWMIRNGLVINNDVNDFMTEHERKGRTAVLVAVDDELCGLIAIADTVKPEAELAIHILKSMGLEVVLMTGDNSKTARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMANVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIDLSRETVKRIRINFVFALIYNLVGIPIAAGVFMPIGLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKPTYE 1416 The following BLAST results are available for this feature:
BLAST of TCONS_00000745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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