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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000742 ID=TCONS_00000742|Name=TCONS_00000742|organism=Clytia hemisphaerica|type=transcript|length=6318bpRun BLAST on NCBI transcript from alignment at sc0000005:1312325..1330987+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000742 ID=TCONS_00000742|Name=TCONS_00000742|organism=Clytia hemisphaerica|type=transcript|length=18663bp|location=Sequence derived from alignment at sc0000005:1312325..1330987+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000742 vs. Swiss-Prot (Human)
Match: ATP7A (Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3) HSP 1 Score: 1011.91 bits (2615), Expect = 0.000e+0 Identity = 583/1254 (46.49%), Postives = 778/1254 (62.04%), Query Frame = 2
Query: 245 GVTSIKVSLEDEEAGIVYDPTITTVADLVSAIEDMGFDACEK-------------------------------PGDTQDDSVSLETVLIDIQGMKCNSCVNNIENTIGGRESVHQIKVSLEDKNATIDYDSCVESPEQICDAICEMGFDAF-------------------LKNNNMKTV--------LLAIEGMTCQSCVKTITEVMSKKDGVKNINVSLEKNNALIEYDSDNVDVSFLCQSIEEMGFDAYLESTKLKETYLSNTSLDDLSVTYTKKGXXXXXXXXXXXXXXXXXXXXVLSPGIQAMSAIDMEATK---KSFFHVTGMSCSSCVGKIERELKKKTGVYNVTVGLLAQKAEVLYDPDETNEETLKNHIEALGFGASVLQNHNLKERTVQFEIFGFEKGVSSLYLIENSILRLNGILDISILQDGTHITCTYDPTECGPRDIKDSIEKLGFQARLDTNQKEDDFLSHTKEINQWKKSFLFSLIFGLPVLIITFTYMALMAYGIHDLH----------------------VIPGLSLENLVVFTLCSIVQILGGRRFYVSAYRSLSHGSANMDVLIALATTVSYVYSVIVLAIAMVEKLDHSPKTFFETPPMLFTFISLGRWLEHIAKRKTSEALNRLLSLQPTEALLVTLEKGSMQILSEEQIDVALVQTGDILLVKPGSKIPCDGKVISGRTSVNESLITGEAMPVVKEVGDSVIGGTVNQVGAVLIQATHVGQDSALSQIVKLVEDAQTSKAPIQRVADTIASVFVPIIVVLSMITLTVWIVIGYQYFEWVHTHDHSSLHGHN------EIIIQFAFRCAISVLCIACPCALGLATPTAVMVGTGVGALNGILIKGGEPLELAHKIKTVVFDKTGTLTIGKPQVVATKIFAEGLSLQWKEFMAIAGTAEMKSEHPLGIALKDYVIENLGSHSLGDADDFEGFPGKGLKCTVTNID----------ISNTAPDQSTVDIEVSG--IPVDKVNVPKPNIGSIRSKKRYEVLIGTRLFMFDNSIVISDDVEQIMQSHERQGRTSVLIAVDNHICGLVAFSDSIKEDARKAIITLKKMGMKVVMLTGDNEKTAEAIGRQVNVDKIYAKVLPSNKVDKIKMFQRNGDVVAMVGDGINDSPALAQADVGIAVGTGTDVAVEAADVVLIKNNLMDVVAAIDLSRKTVRKIKTNFIFALIYNLIGIPIAAGVFMPLNFVLKPWXXXXXXXXXXXXXXXXXXXXKTYKKPQYD 3703
GV IKVSL+++EA IVY P + +V ++ IE MGF A K P T D S T +ID GM C SCV+NIE+T+ + V I VSLE+++A + Y++ +PE + AI + + L+ + V ++ I+GMTC SCV++I V+SKK GVK+I VSL +N +EYD L +IE+MGFDA L T ++ S + +T T + + G+ + D E K K + VTGM+C+SCV IER L+++ G+Y++ V L+A KAEV Y+P + I LGFGA+V++N + + ++ + G S ++ IE+S+ + GIL S+ YDP GPRDI +IE LGF+A L + L H +EI QW++SFL SL F +PV+ + YM +M + LH ++PGLS+ NL+ F LC VQ GG FY+ AY++L H +ANMDVLI LATT+++ YS+I+L +AM E+ +P TFF+TPPMLF FI+LGRWLEHIAK KTSEAL +L+SLQ TEA +VTL+ ++ +LSEEQ+DV LVQ GDI+ V PG K P DG+VI G + V+ESLITGEAMPV K+ G +VI G++NQ G++LI ATHVG D+ LSQIVKLVE+AQTSKAPIQ+ AD ++ FVP IV +S+ TL VWIVIG+ FE V T+ G+N E II+FAF+ +I+VLCIACPC+LGLATPTAVMVGTGVGA NGILIKGGEPLE+AHK+K VVFDKTGT+T G P V K+ E + + +AI GTAE SEHPLG A+ Y + L + +LG DF+ PG G+ C VTNI+ N + S V I+ S + I + + ++Y+VLIG R +M N +VI++DV M HER+GRT+VL+AVD+ +CGL+A +D++K +A AI LK MG++VV++TGDN KTA +I QV + K++A+VLPS+KV K+K Q G VAMVGDGINDSPALA A+VGIA+GTGTDVA+EAADVVLI+N+L+DVVA+IDLSR+TV++I+ NF+FALIYNL+GIPIAAGVFMP+ VL+PWM S AMA SSVSVV SSL LK Y+KP Y+
Sbjct: 198 GVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQPKYLKLGAIDVERLKNTPVKSSEGSQQRSPSYTND---STATFIID--GMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVKYNASSVTPESLRKAIEAVSPGLYRVSITSEVESTSNSPSSSSLQKIPLNVVSQPLTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLSDTNEPLVVIAQPSSEMPLLTSTNE---------------------FYTKGMTPVQ--DKEEGKNSSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIENADEGDGVLELVVRGM-TCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEASLVKKDRSASHLDHKREIRQWRRSFLVSLFFCIPVMGL-MIYMMVMDHHFATLHHNQNMSKEEMINLHSSMFLERQILPGLSVMNLLSFLLCVPVQFFGGWYFYIQAYKALKHKTANMDVLIVLATTIAFAYSLIILLVAMYERAKVNPITFFDTPPMLFVFIALGRWLEHIAKGKTSEALAKLISLQATEATIVTLDSDNI-LLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLSGYFVPFIVFVSIATLLVWIVIGFLNFEIVETY----FPGYNRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHPLGTAITKYCKQELDTETLGTCIDFQVVPGCGISCKVTNIEGLLHKNNWNIEDNNIKNASLVQIDASNEQSSTSSSMIIDAQISNALNAQQYKVLIGNREWMIRNGLVINNDVNDFMTEHERKGRTAVLVAVDDELCGLIAIADTVKPEAELAIHILKSMGLEVVLMTGDNSKTARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMANVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIDLSRETVKRIRINFVFALIYNLVGIPIAAGVFMPIGLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKPTYE 1416 HSP 2 Score: 114.005 bits (284), Expect = 6.011e-25 Identity = 125/448 (27.90%), Postives = 192/448 (42.86%), Query Frame = 2
Query: 242 DGVTSIKVSLEDEEAGIVYDPTITTVADLVSAIEDMGFDACEKPGDTQDDSVSLETVLIDIQGMKCNSCVNNIENTIGGRESVHQIKVSLEDKNATIDYDSCVESPEQICDAICEMGFD--------AFLKNNNM----KTVL-LAIEGMTCQSCVKTITEVMSKKDGVKNINVSLEKNNALIEYDSDNVDVSFLCQSIEEMGFDAYLESTKLKETYLSNTSLD--DLSVTYTKKGXXXXXXXXXXXXXXXXXXXXVLSPGIQAMSAIDMEATKKSFFHVTGMSCSSCVGKIERELKKKTGVYNVTVGLLAQKAEVLYDPDETNEETLKNHIEALGFG------------------ASVLQ-------NHNLKERTVQFEIFGFEKGVSSLYLIENSILRLNGILDISILQDGTHITCTYDPTECGPRDIKDSIEKLGFQARL-DTNQ 1462
+GV IKVSLE++ A I+YDP + T L AI+DMGFDA D V +T+ + + ++I++T+ + V IK+ + + + + + QI + + E+ D ++++M + VL + +EGMTC SC TI + K GV+ I VSL+ A I Y + V + + IE MGF A++ K + YL ++D L T K S G Q S + +F + GM C SCV IE L V ++ V L + A V Y+ E+L+ IEA+ G +S LQ + L + TV I G S + IE I + G+ I + ++ T YDP P ++ +IE +GF A L DTN+
Sbjct: 34 NGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNPDPL--PVLTDTLFLTVTA-SLTLPWDHIQSTLLKTKGVTDIKIYPQKRTVAVTIIPSIVNANQIKELVPELSLDTGTLEKKSGACEDHSMAQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFV---KKQPKYLKLGAIDVERLKNTPVKS-----------------------SEGSQQRSPSYTNDSTATFI-IDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVKYNASSVTPESLRKAIEAVSPGLYRVSITSEVESTSNSPSSSSLQKIPLNVVSQPLTQETV-INIDGMTCN-SCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLSDTNE 449 HSP 3 Score: 101.679 bits (252), Expect = 3.369e-21 Identity = 80/282 (28.37%), Postives = 126/282 (44.68%), Query Frame = 2
Query: 386 DDSVSLETVLIDIQGMKCNSCVNNIENTIGGRESVHQIKVSLEDKNATIDYDSCVESPEQICDAICEMGFDAFLKNNNMKTVLLAIEGMTCQSCVKT----ITEVMSKKDGVKNINVSLEKNNALIEYDSDNVDVSFLCQSIEEMGFDAYLESTKLKETYLSNTSLDDLSVTYTKKGXXXXXXXXXXXXXXXXXXXXVLSPGIQAMSAIDMEATKKSFFHVTGMSCSSCVGKIERELKKKTGVYNVTVGLLAQKAEVLYDPDETNEETLKNHIEALGFGASV 1219
D S+ + +V I ++GM CNSCV IE IG VH IKVSLE+KNATI YD +++P+ + +AI +MGFDA + N + VL +T + + I + K GV +I + +K + V+ + + + + E+ D K + + +D S+ + VL ++ M+ C SC IE ++ K GV + V L Q+A ++Y P + E +K IEA+GF A V
Sbjct: 2 DPSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNPDPLPVLTDTLFLTVTASLTLPWDHIQSTLLKTKGVTDIKIYPQKRTVAVTIIPSIVNANQIKELVPELSLDTGTLEKK-------SGACEDHSMAQAGE--------------------VVLKMKVEGMT------------------CHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFV 238 The following BLAST results are available for this feature:
BLAST of TCONS_00000742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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