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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000735 ID=TCONS_00000735|Name=TCONS_00000735|organism=Clytia hemisphaerica|type=transcript|length=2127bpRun BLAST on NCBI transcript from alignment at sc0000005:1261811..1299191+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000735 ID=TCONS_00000735|Name=TCONS_00000735|organism=Clytia hemisphaerica|type=transcript|length=37381bp|location=Sequence derived from alignment at sc0000005:1261811..1299191+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000735 vs. Swiss-Prot (Human)
Match: PAG15 (Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2) HSP 1 Score: 253.447 bits (646), Expect = 6.067e-76 Identity = 139/381 (36.48%), Postives = 223/381 (58.53%), Query Frame = 1
Query: 355 PVVIVPGTGGNQLQAKLTGKPSKPAWYCYSTTSSYFTLWLDIKSLLPPAINCWVDNMRLDWNMKDMTVANSPGVLTRTFDFGQTTSFETVD--TLGLIKYIKPLADYLETLGYKRGKDIRGAPYDFRYSPDRQPDHYHLKLRDLIEETYVSNGNTPVTLLSHSYGCAMSLYFLSIQSQAWKSKYLKQWIPMSGVFAGTKQQVQLYAAGLLMGVPQAIVNPLTIRGEQRSSISNLYMLPAAKFWSKNDVIARTKSKTYYIGDIDQFLIDVGFPQGAIMRKHIVNSTALMDSI--PGIPIQCFYGVIKKSTVETLEYDGGFPDKFANLIMGDGDGTVNIESLRLCGSFKSKQNESVTVTEVPNVDHTAIISDKSVMSKIGQLL 1485
PVV+VPG GNQL+AKL KP+ + C T SYFT+WL+++ LLP I+CW+DN+RL +N GV R FG+T S E +D + Y + + L GY RG+D+RGAPYD+R +P+ Y L LR++IEE Y G PV L++HS G +LYFL Q QAWK KY++ ++ + + G + +++ A+G +P ++ PL IR +QRS++S ++LP WS V +T + Y + D +F D+GF G +MR+ ++ L+++ PG+ + C YG T ++ Y+ FPD+ + GDGDGTVN++S C +++S+Q V + E+P +H ++++ + ++ + ++L
Sbjct: 39 PVVLVPGDLGNQLEAKLD-KPTVVHYLCSKKTESYFTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVGWGYTRGEDVRGAPYDWRRAPNEN-GPYFLALREMIEEMYQLYGG-PVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRIP--VIGPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQ---DTEGLVEATMPPGVQLHCLYGT-GVPTPDSFYYE-SFPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVL 409 The following BLAST results are available for this feature:
BLAST of TCONS_00000735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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