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TCONS_00000733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000733
Unique NameTCONS_00000733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000733 ID=TCONS_00000733|Name=TCONS_00000733|organism=Clytia hemisphaerica|type=transcript|length=560bp
GCGACTTAAGTTTTATGGCAATTTTAAATCTGATTTTTGTAAATGATCAA
TGGGCCCCAATTGGAGTACCCTACCTTTTAGGAACAGCCATTTGAAgggg
agtcattttgctttaaaaattgTGCGGACAGCAGGTGTGAAAAAGGCTAG
ATATCAACAAAATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTT
TGTATGAAGATCAATGCAGATCAagGTATTTTAGATGACTACATGGAAGA
TGGCTCTGGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAGC
GACCCACAAGACAACCAACATTACCCCCTTACAAAAACTACTGTAAGAAG
AGTTATGACAAGTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTTG
TAAAACCGAAAGAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCAA
GATATGTTGATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAAC
CTttgtaaaatttaagaaaaattcttAAATGTAGAAAGATGTCAAATGAT
TCTATATTAA
Run BLAST on NCBI

protein sequence of TCONS_00000733-protein

>TCONS_00000733-protein ID=TCONS_00000733-protein|Name=TCONS_00000733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MKSLIILSLVACFCMKINADQGILDDYMEDGSGLPMTTIQPEKSTKRPTR
QPTLPPYKNYCKKSYDKCMKKWYCPLLCSCKTERNICCEREFNRCARYVD
MGRYRQCLYRYVNLCKI
Run BLAST on NCBI

transcript from alignment at sc0000005:1061322..1065373+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000733 ID=TCONS_00000733|Name=TCONS_00000733|organism=Clytia hemisphaerica|type=transcript|length=4052bp|location=Sequence derived from alignment at sc0000005:1061322..1065373+ (Clytia hemisphaerica)
GCGACTTAAGTTTTATGGCAATTTTAAATCTGATTTTTGTAAATGATCAA TGGGCCCCAATTGGAGTACCCTACCTTTTAGGAACAGCCATTTGAAgggg agtcattttgctttaaaaattgTGCGGACAGCAGGTGTGAAAAAGGTAAA AGAATTTTAAGTATAATATAAGTACTTCAGGGATTGTTGACTCTATGTTC AAATGcgtgacaaaatatttttggttttgagATTTGTTTAATATTTTGAT AGCGGTGCCTGAGAGAGTCTCTTGAAAGACAAATACCTGATTTATTCATT CTTGCTGGCTTGAAATAATGCAGATTGTTATTGCCCTTCCtataaaattt tgacaaatgtAAATGATCAAGAAAAGATAGTCAAGTttcattttacagac cagaatatgttaaattgacaagagcagccgccggcagatttttttgaaat atctgttctttttttccaggagagtaaatttaatggataaatctaggaga gactttcctcaaaaaacctaggtaaaatccaggggtcgcctttacaacat ctgttcttaaaatccaggagcacattttaaggaaaaacacatacaatttt ccagcgggcAATCTGTTCAAAGaatccaggagctaaattgtgaNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNcagatatacattttccaggagtcccattttttcc cagaacagatgatataatccaggagagcccaggatacagaacagatagtt ttttccaggagaaagggacttaaagaacagatatttcataatttctagcc ggtggctgctaTCTTGAATtgattcaaaaatattctttgtGTCTTTCTCC AAGAACTTTAAAGACCAGCTAGTGAAATTTGCGTGTGTTGTAAAGTGTAT CTAGTGCATTATAtatctaaaaattatgaaaatcacTCACATATCTTCAC CCAATAATGAACAAGTCTGTGAACAGATTGCCCAAAAGATTTAGCGTCGT AGGCAAAAAAATCGTCTCCAAGcccaaaatatcaaatgtataatttttat taaataaaaaaagggaACAAGTgttccaaatttcagccaaattaaaaACC AGtgaccatttttgaaatctcagGGGTAACCGAAGCTTTAGTCTGgtttt tgcaaaaaacttttaGGCCGCCCCTAAAGctcaaactttttgaagaatga aaaaTCACCCCAGGCCCTAGTAAAGcattaatcttaaaattttattgaaa tgttttttaaactACGTCATAAGTAATGAGAAATGTTTGTTAGAAGGTAT CGATTCACGTCGACAATTTTGTCACACTTTCCAAATTTAGTAAGAAGGTT ATGGTAGGTTTAGTATTTTACATGACACCTATATCTATCAGATTATCCTC TTGATGGAAACGTTGGTACCATAAAAAAACTTATATTATATAACTCCCTT TCCTTTGTCATAATTTTACGGATATACCTgggtaaaaaattatttattat aaTTTGACGCTTGTNCCTTTCCTTTGTCGCAATTTTACGGTATACCtggg taaaaaaatatttattataatttGACGCTTATCGCACACAGGCTAGATAT CAACAAAATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTTTGTA TGAAGATCAATGCAGATCAaggtaatgacgtcattttcgtTCTACGCTCG ACTAGTTCTTGCAGGTACAGCAAAATTTATTTAGTCAGattcatggcgtt ctaaatctagatcacatgtcaatgttctatttctctGACCACCAATGCTA AatctagatttagaacgccatggtcaGATATAATCTAACAGTTTGATATA ACATCCATTCGGATGNCAACGCCATGGTCAGATTTAATCTAACAGTTTGA TTTAACATCCATTCGGATGTTTAAAATGTAGTAGTATGAGTAAAGGGTCC AACCGGATCTGGACTCAACCTTTATGGATAAAACTCCGAATAGAAATGTA TGtggttaaaaaatatatatatatatcgaCTATTATAGCCGCAGGGGTGA AGAACAATCTACGTAGgagagagcagatttttacgaCTAAGCACTTACTG TACCTATTGGtaatataaaaacataattcACAGAACCGCTATCTACttca aatacaccttttcgaccgtagccgccaattgccgcgcgggcattttttac caccctaaaccaatcctttttttgcacttttttctattgtcttcaggcgc gaaaaaaagactgggacggttttagggtggtaaaaaatgcccacgcggca attagcggctacggtcgaaaaggtgtattctatcaaaagttaaagcattt tttgtctccactggcaaattatattgagacagactttaaatcCAGTATTG TAGGGGTAACGAAAAAAGATCGATAAGACAATAGCAATTATGAAGTTTTT CCATAACCATAACTTTCGGTTTTCAGGTATTTTAGATGACTACATGGAAG ATGGCTCTGGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAG CGACCCACAAGACAACCAACATTACCCCCTTACAAAAACTACGTATTATG ATTTTATGGGCCCcttttgatttatatttacAATGAATTATACATTTAAT TGCCCTTAAATTTGCACCAAATTTGAAACGATGGAGTGAATCTTGTTTTT TTGGAGTACATTTTCCAAAACAAGCGTTATATCTCATAGGATAATTTGCT ATTTCTATTTCTTGCTAAAACCCTAAAGTAGCCCAATTACGCATCAGAGA GGAATTGTAGACGGTCTTTGTCCTGCCGCATTCCTGCTTGAGTTCAGCTA CCCTTTTGCGTAAGCCTTAAAATACTTCGATTGAATCATCCACCAATCCC CGGAAATGAGGACTTGTTGGCTTGCTAGTCCTTCCACTGCCTAATCTGTG ATGGTTGGGCGAAACCATCCGATCCCAAACCTTCCAGATGCTATAAATTC TCCCGATCTTTAGATTTAGATCTTTTTAGCGTGttagaagaaaattattt atttagtAAAATGTAatgttcaaatttcaaattcgtttaGCAGGGACTCC ACCACAAAGGTTCAGCTTGATTTCACTGTCCGAAAGCATAAATTTATGAT GCTTTTCTCATTGTTTCTTTCAGTGTAAGAAGAGTTATGACAAGTGTATG AAAAAATGGTATTGCCCTTTGCTTTGCAGTTGTAAAACCGAAAGAAATAT TTGCGTAAGTTTGTTTCACTGCATATCCTGCCTGGTAAAAATAGATGCTT GCCTATTCAACATTCTGTCCATTCTTTCCATTCTcagtttatatattttt ggattcTTCTGGCTAAGGTTGACCTTTGTGAAACAAAAGGTTTTTACTTT TGGATTTTTTGGAGCCATAACTATAAAGGGAAATTTCTGCAAAAGgaaat ttgagattttagcAGTTATTTAACCCCTTAACCTATCTACCCTACCTCTA ACTAACTTTTAAATTATTTCAAGCTTGTTTATGGATTATGCTGATTGCAG CACTATATTTCCGAGCAAGATTACCTCCAAAAGTTTTTAAATCACTCTGT TGTAAGCGAGAATTTATGTCCAATATTCTCGATAATGGTTCAatattgtt tttcaattttacagtGTGAACGAGAGTTCAACCGATGTGCAAGATATGTT GATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAACCTttgtaa aatttaagaaaaattcttAAATGTAGAAAGATGTCAAATGATTCTATATT AA

Coding sequence (CDS) from alignment at sc0000005:1061322..1065373+

>TCONS_00000733 ID=TCONS_00000733|Name=TCONS_00000733|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0000005:1061322..1065373+ (Clytia hemisphaerica)
ATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTTTGTATGAAGAT
CAATGCAGATCAagGTATTTTAGATGACTACATGGAAGATGGCTCTGGGT
TACCAATGACAACTATCCAACCTGAGAAGTCAACAAAGCGACCCACAAGA
CAACCAACATTACCCCCTTACAAAAACTACTGTAAGAAGAGTTATGACAA
GTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTTGTAAAACCGAAA
GAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCAAGATATGTTGAT
ATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAACCTttgtaaaat
ttaaATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTTTGTATGA
AGATCAATGCAGATCAagGTATTTTAGATGACTACATGGAAGATGGCTCT
GGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAGCGACCCAC
AAGACAACCAACATTACCCCCTTACAAAAACTACTGTAAGAAGAGTTATG
ACAAGTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTTGTAAAACC
GAAAGAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCAAGATATGT
TGATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAACCTttgta
aaatttaaATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTTTGT
ATGAAGATCAATGCAGATCAagGTATTTTAGATGACTACATGGAAGATGG
CTCTGGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAGCGAC
CCACAAGACAACCAACATTACCCCCTTACAAAAACTACTGTAAGAAGAGT
TATGACAAGTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTTGTAA
AACCGAAAGAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCAAGAT
ATGTTGATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAACCTt
tgtaaaatttaaATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTT
TTGTATGAAGATCAATGCAGATCAagGTATTTTAGATGACTACATGGAAG
ATGGCTCTGGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAG
CGACCCACAAGACAACCAACATTACCCCCTTACAAAAACTACTGTAAGAA
GAGTTATGACAAGTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTT
GTAAAACCGAAAGAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCA
AGATATGTTGATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAA
CCTttgtaaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000460XLOC_000460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000733-exon-sc0000005-1491911889:1061322..1061466TCONS_00000733-exon-sc0000005-1491911889:1061322..1061466Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1061322..1061466TCONS_00000733-exon-sc0000005-1510915933:1061322..1061466Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1061322..1061466TCONS_00000733-exon-sc0000005-1575043694:1061322..1061466Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1491911889:1063163..1063242TCONS_00000733-exon-sc0000005-1491911889:1063163..1063242Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1063163..1063242TCONS_00000733-exon-sc0000005-1510915933:1063163..1063242Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1063163..1063242TCONS_00000733-exon-sc0000005-1575043694:1063163..1063242Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1491911889:1064048..1064163TCONS_00000733-exon-sc0000005-1491911889:1064048..1064163Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1064048..1064163TCONS_00000733-exon-sc0000005-1510915933:1064048..1064163Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1064048..1064163TCONS_00000733-exon-sc0000005-1575043694:1064048..1064163Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1491911889:1064745..1064825TCONS_00000733-exon-sc0000005-1491911889:1064745..1064825Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1064745..1064825TCONS_00000733-exon-sc0000005-1510915933:1064745..1064825Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1064745..1064825TCONS_00000733-exon-sc0000005-1575043694:1064745..1064825Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1491911889:1065236..1065373TCONS_00000733-exon-sc0000005-1491911889:1065236..1065373Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1065236..1065373TCONS_00000733-exon-sc0000005-1510915933:1065236..1065373Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1065236..1065373TCONS_00000733-exon-sc0000005-1575043694:1065236..1065373Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000733-proteinTCONS_00000733-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1061322..1065373 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.404305 0.19713 0.114444 0.335896 0 0 0 0.121657 0.17035 0 0.307211 0.336581 87.9944 81.1208 33.3461 52.2308 5.69081 2.64425 347.374 302.787 47.0063 37.6096 51.5719 60.8996 118.071 104.213 0 0.147913 0.112187 0.342901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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