TCONS_00000733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000733
Unique NameTCONS_00000733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000733 ID=TCONS_00000733|Name=TCONS_00000733|organism=Clytia hemisphaerica|type=transcript|length=560bp
GCGACTTAAGTTTTATGGCAATTTTAAATCTGATTTTTGTAAATGATCAA
TGGGCCCCAATTGGAGTACCCTACCTTTTAGGAACAGCCATTTGAAgggg
agtcattttgctttaaaaattgTGCGGACAGCAGGTGTGAAAAAGGCTAG
ATATCAACAAAATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTT
TGTATGAAGATCAATGCAGATCAagGTATTTTAGATGACTACATGGAAGA
TGGCTCTGGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAGC
GACCCACAAGACAACCAACATTACCCCCTTACAAAAACTACTGTAAGAAG
AGTTATGACAAGTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTTG
TAAAACCGAAAGAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCAA
GATATGTTGATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAAC
CTttgtaaaatttaagaaaaattcttAAATGTAGAAAGATGTCAAATGAT
TCTATATTAA
Run BLAST on NCBI

protein sequence of TCONS_00000733-protein

>TCONS_00000733-protein ID=TCONS_00000733-protein|Name=TCONS_00000733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MKSLIILSLVACFCMKINADQGILDDYMEDGSGLPMTTIQPEKSTKRPTR
QPTLPPYKNYCKKSYDKCMKKWYCPLLCSCKTERNICCEREFNRCARYVD
MGRYRQCLYRYVNLCKI
Run BLAST on NCBI

transcript from alignment at sc0000005:1061322..1065373+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000733 ID=TCONS_00000733|Name=TCONS_00000733|organism=Clytia hemisphaerica|type=transcript|length=4052bp|location=Sequence derived from alignment at sc0000005:1061322..1065373+ (Clytia hemisphaerica)
GCGACTTAAGTTTTATGGCAATTTTAAATCTGATTTTTGTAAATGATCAA
TGGGCCCCAATTGGAGTACCCTACCTTTTAGGAACAGCCATTTGAAgggg
agtcattttgctttaaaaattgTGCGGACAGCAGGTGTGAAAAAGGTAAA
AGAATTTTAAGTATAATATAAGTACTTCAGGGATTGTTGACTCTATGTTC
AAATGcgtgacaaaatatttttggttttgagATTTGTTTAATATTTTGAT
AGCGGTGCCTGAGAGAGTCTCTTGAAAGACAAATACCTGATTTATTCATT
CTTGCTGGCTTGAAATAATGCAGATTGTTATTGCCCTTCCtataaaattt
tgacaaatgtAAATGATCAAGAAAAGATAGTCAAGTttcattttacagac
cagaatatgttaaattgacaagagcagccgccggcagatttttttgaaat
atctgttctttttttccaggagagtaaatttaatggataaatctaggaga
gactttcctcaaaaaacctaggtaaaatccaggggtcgcctttacaacat
ctgttcttaaaatccaggagcacattttaaggaaaaacacatacaatttt
ccagcgggcAATCTGTTCAAAGaatccaggagctaaattgtgaNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNcagatatacattttccaggagtcccattttttcc
cagaacagatgatataatccaggagagcccaggatacagaacagatagtt
ttttccaggagaaagggacttaaagaacagatatttcataatttctagcc
ggtggctgctaTCTTGAATtgattcaaaaatattctttgtGTCTTTCTCC
AAGAACTTTAAAGACCAGCTAGTGAAATTTGCGTGTGTTGTAAAGTGTAT
CTAGTGCATTATAtatctaaaaattatgaaaatcacTCACATATCTTCAC
CCAATAATGAACAAGTCTGTGAACAGATTGCCCAAAAGATTTAGCGTCGT
AGGCAAAAAAATCGTCTCCAAGcccaaaatatcaaatgtataatttttat
taaataaaaaaagggaACAAGTgttccaaatttcagccaaattaaaaACC
AGtgaccatttttgaaatctcagGGGTAACCGAAGCTTTAGTCTGgtttt
tgcaaaaaacttttaGGCCGCCCCTAAAGctcaaactttttgaagaatga
aaaaTCACCCCAGGCCCTAGTAAAGcattaatcttaaaattttattgaaa
tgttttttaaactACGTCATAAGTAATGAGAAATGTTTGTTAGAAGGTAT
CGATTCACGTCGACAATTTTGTCACACTTTCCAAATTTAGTAAGAAGGTT
ATGGTAGGTTTAGTATTTTACATGACACCTATATCTATCAGATTATCCTC
TTGATGGAAACGTTGGTACCATAAAAAAACTTATATTATATAACTCCCTT
TCCTTTGTCATAATTTTACGGATATACCTgggtaaaaaattatttattat
aaTTTGACGCTTGTNCCTTTCCTTTGTCGCAATTTTACGGTATACCtggg
taaaaaaatatttattataatttGACGCTTATCGCACACAGGCTAGATAT
CAACAAAATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTTTGTA
TGAAGATCAATGCAGATCAaggtaatgacgtcattttcgtTCTACGCTCG
ACTAGTTCTTGCAGGTACAGCAAAATTTATTTAGTCAGattcatggcgtt
ctaaatctagatcacatgtcaatgttctatttctctGACCACCAATGCTA
AatctagatttagaacgccatggtcaGATATAATCTAACAGTTTGATATA
ACATCCATTCGGATGNCAACGCCATGGTCAGATTTAATCTAACAGTTTGA
TTTAACATCCATTCGGATGTTTAAAATGTAGTAGTATGAGTAAAGGGTCC
AACCGGATCTGGACTCAACCTTTATGGATAAAACTCCGAATAGAAATGTA
TGtggttaaaaaatatatatatatatcgaCTATTATAGCCGCAGGGGTGA
AGAACAATCTACGTAGgagagagcagatttttacgaCTAAGCACTTACTG
TACCTATTGGtaatataaaaacataattcACAGAACCGCTATCTACttca
aatacaccttttcgaccgtagccgccaattgccgcgcgggcattttttac
caccctaaaccaatcctttttttgcacttttttctattgtcttcaggcgc
gaaaaaaagactgggacggttttagggtggtaaaaaatgcccacgcggca
attagcggctacggtcgaaaaggtgtattctatcaaaagttaaagcattt
tttgtctccactggcaaattatattgagacagactttaaatcCAGTATTG
TAGGGGTAACGAAAAAAGATCGATAAGACAATAGCAATTATGAAGTTTTT
CCATAACCATAACTTTCGGTTTTCAGGTATTTTAGATGACTACATGGAAG
ATGGCTCTGGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAG
CGACCCACAAGACAACCAACATTACCCCCTTACAAAAACTACGTATTATG
ATTTTATGGGCCCcttttgatttatatttacAATGAATTATACATTTAAT
TGCCCTTAAATTTGCACCAAATTTGAAACGATGGAGTGAATCTTGTTTTT
TTGGAGTACATTTTCCAAAACAAGCGTTATATCTCATAGGATAATTTGCT
ATTTCTATTTCTTGCTAAAACCCTAAAGTAGCCCAATTACGCATCAGAGA
GGAATTGTAGACGGTCTTTGTCCTGCCGCATTCCTGCTTGAGTTCAGCTA
CCCTTTTGCGTAAGCCTTAAAATACTTCGATTGAATCATCCACCAATCCC
CGGAAATGAGGACTTGTTGGCTTGCTAGTCCTTCCACTGCCTAATCTGTG
ATGGTTGGGCGAAACCATCCGATCCCAAACCTTCCAGATGCTATAAATTC
TCCCGATCTTTAGATTTAGATCTTTTTAGCGTGttagaagaaaattattt
atttagtAAAATGTAatgttcaaatttcaaattcgtttaGCAGGGACTCC
ACCACAAAGGTTCAGCTTGATTTCACTGTCCGAAAGCATAAATTTATGAT
GCTTTTCTCATTGTTTCTTTCAGTGTAAGAAGAGTTATGACAAGTGTATG
AAAAAATGGTATTGCCCTTTGCTTTGCAGTTGTAAAACCGAAAGAAATAT
TTGCGTAAGTTTGTTTCACTGCATATCCTGCCTGGTAAAAATAGATGCTT
GCCTATTCAACATTCTGTCCATTCTTTCCATTCTcagtttatatattttt
ggattcTTCTGGCTAAGGTTGACCTTTGTGAAACAAAAGGTTTTTACTTT
TGGATTTTTTGGAGCCATAACTATAAAGGGAAATTTCTGCAAAAGgaaat
ttgagattttagcAGTTATTTAACCCCTTAACCTATCTACCCTACCTCTA
ACTAACTTTTAAATTATTTCAAGCTTGTTTATGGATTATGCTGATTGCAG
CACTATATTTCCGAGCAAGATTACCTCCAAAAGTTTTTAAATCACTCTGT
TGTAAGCGAGAATTTATGTCCAATATTCTCGATAATGGTTCAatattgtt
tttcaattttacagtGTGAACGAGAGTTCAACCGATGTGCAAGATATGTT
GATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAACCTttgtaa
aatttaagaaaaattcttAAATGTAGAAAGATGTCAAATGATTCTATATT
AA

Coding sequence (CDS) from alignment at sc0000005:1061322..1065373+

>TCONS_00000733 ID=TCONS_00000733|Name=TCONS_00000733|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0000005:1061322..1065373+ (Clytia hemisphaerica)
ATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTTTGTATGAAGAT
CAATGCAGATCAagGTATTTTAGATGACTACATGGAAGATGGCTCTGGGT
TACCAATGACAACTATCCAACCTGAGAAGTCAACAAAGCGACCCACAAGA
CAACCAACATTACCCCCTTACAAAAACTACTGTAAGAAGAGTTATGACAA
GTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTTGTAAAACCGAAA
GAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCAAGATATGTTGAT
ATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAACCTttgtaaaat
ttaaATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTTTGTATGA
AGATCAATGCAGATCAagGTATTTTAGATGACTACATGGAAGATGGCTCT
GGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAGCGACCCAC
AAGACAACCAACATTACCCCCTTACAAAAACTACTGTAAGAAGAGTTATG
ACAAGTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTTGTAAAACC
GAAAGAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCAAGATATGT
TGATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAACCTttgta
aaatttaaATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTTTTGT
ATGAAGATCAATGCAGATCAagGTATTTTAGATGACTACATGGAAGATGG
CTCTGGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAGCGAC
CCACAAGACAACCAACATTACCCCCTTACAAAAACTACTGTAAGAAGAGT
TATGACAAGTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTTGTAA
AACCGAAAGAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCAAGAT
ATGTTGATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAACCTt
tgtaaaatttaaATGAAGAGCTTGATAATTTTATCTTTGGTTGCTTGCTT
TTGTATGAAGATCAATGCAGATCAagGTATTTTAGATGACTACATGGAAG
ATGGCTCTGGGTTACCAATGACAACTATCCAACCTGAGAAGTCAACAAAG
CGACCCACAAGACAACCAACATTACCCCCTTACAAAAACTACTGTAAGAA
GAGTTATGACAAGTGTATGAAAAAATGGTATTGCCCTTTGCTTTGCAGTT
GTAAAACCGAAAGAAATATTTGCtGTGAACGAGAGTTCAACCGATGTGCA
AGATATGTTGATATGGGGCGTTACCGACAATGTCTTTATCGTTATGTAAA
CCTttgtaaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000460XLOC_000460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000733-exon-sc0000005-1491911889:1061322..1061466TCONS_00000733-exon-sc0000005-1491911889:1061322..1061466Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1061322..1061466TCONS_00000733-exon-sc0000005-1510915933:1061322..1061466Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1061322..1061466TCONS_00000733-exon-sc0000005-1575043694:1061322..1061466Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1491911889:1063163..1063242TCONS_00000733-exon-sc0000005-1491911889:1063163..1063242Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1063163..1063242TCONS_00000733-exon-sc0000005-1510915933:1063163..1063242Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1063163..1063242TCONS_00000733-exon-sc0000005-1575043694:1063163..1063242Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1491911889:1064048..1064163TCONS_00000733-exon-sc0000005-1491911889:1064048..1064163Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1064048..1064163TCONS_00000733-exon-sc0000005-1510915933:1064048..1064163Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1064048..1064163TCONS_00000733-exon-sc0000005-1575043694:1064048..1064163Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1491911889:1064745..1064825TCONS_00000733-exon-sc0000005-1491911889:1064745..1064825Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1064745..1064825TCONS_00000733-exon-sc0000005-1510915933:1064745..1064825Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1064745..1064825TCONS_00000733-exon-sc0000005-1575043694:1064745..1064825Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1491911889:1065236..1065373TCONS_00000733-exon-sc0000005-1491911889:1065236..1065373Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1510915933:1065236..1065373TCONS_00000733-exon-sc0000005-1510915933:1065236..1065373Clytia hemisphaericaexon
TCONS_00000733-exon-sc0000005-1575043694:1065236..1065373TCONS_00000733-exon-sc0000005-1575043694:1065236..1065373Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000733-proteinTCONS_00000733-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1061322..1065373 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.404305	0.19713	0.114444	0.335896	0	0	0	0.121657	0.17035	0	0.307211	0.336581	87.9944	81.1208	33.3461	52.2308	5.69081	2.64425	347.374	302.787	47.0063	37.6096	51.5719	60.8996	118.071	104.213	0	0.147913	0.112187	0.342901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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