|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000725 ID=TCONS_00000725|Name=TCONS_00000725|organism=Clytia hemisphaerica|type=transcript|length=1763bpRun BLAST on NCBI protein sequence of TCONS_00000725-protein >TCONS_00000725-protein ID=TCONS_00000725-protein|Name=TCONS_00000725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp MPILRYKNQSTRQVKHTRLDDDVDFEQHFDYGILLGKGSFGTVNEAIRIDRun BLAST on NCBI transcript from alignment at sc0000005:945087..959262+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000725 ID=TCONS_00000725|Name=TCONS_00000725|organism=Clytia hemisphaerica|type=transcript|length=14176bp|location=Sequence derived from alignment at sc0000005:945087..959262+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:945087..959262+ >TCONS_00000725 ID=TCONS_00000725|Name=TCONS_00000725|organism=Clytia hemisphaerica|type=CDS|length=17004bp|location=Sequence derived from alignment at sc0000005:945087..959262+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000725 vs. Swiss-Prot (Human)
Match: STK33 (Serine/threonine-protein kinase 33 OS=Homo sapiens GN=STK33 PE=1 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 6.252e-105 Identity = 158/304 (51.97%), Postives = 222/304 (73.03%), Query Frame = 2
Query: 161 QVKHTRLDDDVDFEQHFDYGILLGKGSFGTVNEAIRIDSGEKFAVKVINKEKAGSAAVKLLEREVAIMKKVDHPNIIFLEEVLETQTKMYLVMELCSHGGLEEMLNERKYFLEQDVLVIMQQLADAIAYIHENDIVHRDLKLDNIL----LAEPTDELPFNVKLTDFGLSYTRGGSGSDYMMNQVVGTPIYMAPEVITNYGYSQQCDIWSLGVILFKLITGNPPFMSFSEEDLFDLIKKGELQFSHENWKNVSPAAKELVEGLMKVDPAHRLTSKEIVSHPWIKGEQEMNGTKTINVLEMMKEY 1060
+V H R+++ E+ + +G +LGKGSFG V EA ++ K+A+K +NKEKAGS+AVKLLEREV I+K V H +II LE+V ET KMYLVMELC G L+E+L+ + +F E + I+Q LA AIAY+H NDIVHRDLKL+NI+ L + +E+ N+K+TDFGL+ + S S+ M+ GTPIYMAPEVI+ + YSQQCDIWS+GV+++ L+ G PPF++ SEE LF+LI+KGEL F + W ++S AK +++ LMKVDPAHR+T+KE++ + W+ G + ++ + NVLEMMKE+
Sbjct: 100 KVPHIRIENGAAIEEIYTFGRILGKGSFGIVIEATDKETETKWAIKKVNKEKAGSSAVKLLEREVNILKSVKHEHIIHLEQVFETPKKMYLVMELCEDGELKEILDRKGHFSENETRWIIQSLASAIAYLHNNDIVHRDLKLENIMVKSSLIDDNNEINLNIKVTDFGLA-VKKQSRSEAMLQATCGTPIYMAPEVISAHDYSQQCDIWSIGVVMYMLLRGEPPFLASSEEKLFELIRKGELHFENAVWNSISDCAKSVLKQLMKVDPAHRITAKELLDNQWLTGNK-LSSVRPTNVLEMMKEW 401 The following BLAST results are available for this feature:
BLAST of TCONS_00000725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.