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TCONS_00000712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000712
Unique NameTCONS_00000712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000712 ID=TCONS_00000712|Name=TCONS_00000712|organism=Clytia hemisphaerica|type=transcript|length=1472bp
AAACAATAgaactttttaaccaatcatAGCGTGTTTACATTTTAATAACA
ACCAATCAGAGTTGAGTAAATTTGTGAATGGGTTTTTTTAATATGTGTTT
GTTACGTTTATCATTTAGATATTTGATCTGATCGAGTTCAGTgatcagaa
aaaaaacagaacGAAATATAAGAAATAATAAGTAGAGAAACAAGTATAGt
atttttttggtggaaaaaatGGAAGCTGTTGATTTGAAGAAAATCAGGAA
AAGTTTATTCGGTTTACCGACGACTAAAGTGAGTCGAAGTTTATTTGGTG
AAGTGGACCATGATGAAGTGAAACGAGATTTGGAACGTGAATACAAAGAA
CTACTGGATGAAAAAACCAAATTATGGAACTTTGATTTCGAAAGATACCA
ACCAAGAGTGGATACAGAATCAAAGTTAAAATGGATTCCTTATTCATCTC
CTGTTACAGAACATTCGATTAAAAGTCAAACTAGTTTGATAACATCCTCA
ACAAGCTGTCAAACAATTGATTATACTTCACGATTTCAAAGACCAGCTGA
TGCAAACCTACCcaagaaaattgcaaaatcaCCATGTGTAAATAATACCA
AGTCACGgttaaataaaacaataaaggACACTTTGAAGCAATCACCGAAA
CAACAGAGTACTTTGTTCATTACGAACACCGACGAAGAAAGCATCAAGAT
CGTTAACGAATCTCCCATACGAAATATTACATCACCAAAAATTTCCGAAG
TACCCATCGAAGAAAGCAAAGTCAAACTCGATATCACTAAGAATCTATCA
CGAAAACGGAAACGAGGGTCACAGCCTACAATAGACGActttatgaagaa
aaagaaacctCGAACAAATATGATGGAATTCAAGAAAGATTTATCAAGCC
CCTCTAGGAGACGCTCGGGACAGATTCAACAACAAATTTAATGAAGAAAA
GAATTGGCGTACCTTCGTTCGATTGTCAACCCAAGCCATCATCCACGTTA
TTTGGAATGGaccatattttttgtttgttttcttttgcGAAACTTAGATC
AGCTATCAAAACATTGTCTTCTGTGAAGAACAACCAACAACattatttca
atatttgaaTCGATTTTTCCAATCCATCATCAGTGATTGTGAAAAATTGC
AGGATTTCGATAGAacgaaaaaaattctctaaaaatattaagaatttaaa
GAATATTatgtttaattcttttttttttgtagatAAAATTTCACCCCTAT
CATTAGTACCTATTCCCCTAATTTGTTATAATTCccttcatttttgtaaa
tacaATTATTTGTTTCATAAAAGTAATTTATTTTCTGTCAAATAAATGAA
tcgagaaaagaaaagaaaaaaactctgAAAAGATCGAAACTGACGTTGTg
gaagattttttcattttcataccCCCGTCCTTATTGGAAGGTTGCCTTGG
TTGACTTTTAGTTTGATTACAG
Run BLAST on NCBI

protein sequence of TCONS_00000712-protein

>TCONS_00000712-protein ID=TCONS_00000712-protein|Name=TCONS_00000712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MEAVDLKKIRKSLFGLPTTKVSRSLFGEVDHDEVKRDLEREYKELLDEKT
KLWNFDFERYQPRVDTESKLKWIPYSSPVTEHSIKSQTSLITSSTSCQTI
DYTSRFQRPADANLPKKIAKSPCVNNTKSRLNKTIKDTLKQSPKQQSTLF
ITNTDEESIKIVNESPIRNITSPKISEVPIEESKVKLDITKNLSRKRKRG
SQPTIDDFMKKKKPRTNMMEFKKDLSSPSRRRSGQIQQQI
Run BLAST on NCBI

transcript from alignment at sc0000005:762440..765012+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000712 ID=TCONS_00000712|Name=TCONS_00000712|organism=Clytia hemisphaerica|type=transcript|length=2573bp|location=Sequence derived from alignment at sc0000005:762440..765012+ (Clytia hemisphaerica)
AAACAATAgaactttttaaccaatcatAGCGTGTTTACATTTTAATAACA ACCAATCAGAGTTGAGTAAATTTGTGAATGGGTTTTTTTAATATGTGTTT GTTACGTTTATCATTTAGATATTTGATCTGATCGAGTTCAGTgatcagaa aaaaaacagaacGAAATATAAGAAATAATAAGTAGAGAAGTATANTTGAT CTGATCGAGTTCAGTgatcagaaaaaaaacagaacGAAATATAAGAAATA ATAAGTAGACAAGTATAGtatttttttggtggaaaaaatGGAAGCTGTTG ATTTGAAGAAAATCAGGAAAAGTTTATTCGGTTTACCGACGACTAAAGTG AGTCGAAGTTTATTTGGTGAAGTGGACCATGATGAAGTGAAACGAGATTT GGAACGTGAATACAAAGAACTACTGGATGAAAAAACCAAATTATGGAACT TTGATTTCGAAAGATACCAACCAAGAGTGGATACAGAATCAAAGTTAAAA TGGATTCCTTATTCATCTCCTGTTACAGAACATTCGATTAAAAGTCAAAC TAGTTTGATAACATCCTCAACAAGCTGTCAAACAATTGATTATACTTCAC GATTTCAAAGACCAGCTGATGCAAACCTACCcaagaaaattgcaaaatca CCATGTGTAAATAATACCAAGTCACGgttaaataaaacaataaaggACAC TTTGAAGCAATCACCGAAACAACAGAGTACTTTGTTCATTACGAACACCG ACGAAGAAAGCATCAAGATCGTTAACGAATCTCCCATACGAAATATTACA TCACCAAAAATTTCCGAAGTACCCATCGAAGAAAGCAAAGTCAAACTCGA TATCACTAAGAATCTATCACGAAAACGGAAACGAGGGTCACAGCCTACAA TAGACGGTATGTATTATACTATCAATGTAATTTTAATCTAAAGTGAGCCT AATTACCCCTACTGTATTATACTCCTTAATAGTTAAATTTGCATCGATCT TTCACAAATTGATCAGTTTTTTTGTCCAGTGACGAAAAATCATACGTTTT TTTAGACAATTGATTTCTtaactttctctttttcttatAATTGTCACGAT GTCATTGTTTACTGACGGGAAGTCTTAATGAGGGTGATTAAGGGGTCCAA AATAAAGAAAGGGAGAAAGTTCTAGATTGTTATTGTCTAAAAAATGATGT CTGAAAATAAACTTAAGATTTATTGATAACCCTCTTTGTAATGAAGTTGA TAAAAGGCTACCTGGATTTGTTAAGTAGTTTTTATCAATTTGGAAAAGCA TGGTCAGCTATGATAAAGCACGACATGACTCAGAGTGGttctaaaaaaca agttttcccAATACTTTTATTTGATCTATAAATTATATACTAATATTTTG GGACCAAAAAACCCACAAAATGAAAGGGAAAACATGTTTAGAACTGCTGG GGGTCTGCTGTTCAAATGTGTCTTTTGTTAGCATTGTTTTAAAATGGTAT AAGAAGAATTAAAATTCCGTTTCTTTACTATTTCAATATTCCActatttt tattctattttctgTTATCTTTCTTTATTCAGActttatgaagaaaaaga aacctCGAACAAATATGATGGAATTCAAGAAAGATTTATCAAGCCCCTCT AGGAGACGCTCGGGACAGGTAAACATCCCTTTCTAAATAGTTTCTTATAT ATAACATCAAGAAAGTTCCTATAAAAGgtatttttgcttaaaacgaAGTG TATCCGAGATTTATATTTCCTGCTTTTTCAAGATgtgattttaagaaaca tgGTTGTCTAGACCTCATGACGTAGTAATCAAAGTACGTCATTAGTTTTT ACTGATATATCTGAGTGTTCCGTCCTAAATTTAAATACTAATATTGTAGG TCTTACTCTGGACCTTGACCAACCACGAGCCCATTCAAAATATTTCCTAA GGCATAGTAAATGGTTCTTTACATTGTATTCTGTATGCAGAAATTATAAC AGGACTTTTTATCCCTCATTTCAGATTCAACAACAAATTTAATGAAGAAA AGAATTGGCGTACCTTCGTTCGATTGTCAACCCAAGCCATCATCCACGTT ATTTGGAATGGaccatattttttgtttgttttcttttgcGAAACTTAGAT CAGCTATCAAAACATTGTCTTCTGTGAAGAACAACCAACAACattatttc aatatttgaaTCGATTTTTCCAATCCATCATCAGTGATTGTGAAAAATTG CAGGATTTCGATAGAacgaaaaaaattctctaaaaatattaagaatttaa aGAATATTatgtttaattcttttttttttgtagatAAAATTTCACCCCTA TCATTAGTACCTATTCCCCTAATTTGTTATAATTCccttcatttttgtaa atacaATTATTTGTTTCATAAAAGTAATTTATTTTCTGTCAAATAAATGA AtcgagaaaagaaaagaaaaaaactctgAAAAGATCGAAACTGACGTTGT ggaagattttttcattttcataccCCCGTCCTTATTGGAAGGTTGCCTTG GTTGACTTTTAGTTTGATTACAG

Coding sequence (CDS) from alignment at sc0000005:762440..765012+

>TCONS_00000712 ID=TCONS_00000712|Name=TCONS_00000712|organism=Clytia hemisphaerica|type=CDS|length=2169bp|location=Sequence derived from alignment at sc0000005:762440..765012+ (Clytia hemisphaerica)
atGGAAGCTGTTGATTTGAAGAAAATCAGGAAAAGTTTATTCGGTTTACC
GACGACTAAAGTGAGTCGAAGTTTATTTGGTGAAGTGGACCATGATGAAG
TGAAACGAGATTTGGAACGTGAATACAAAGAACTACTGGATGAAAAAACC
AAATTATGGAACTTTGATTTCGAAAGATACCAACCAAGAGTGGATACAGA
ATCAAAGTTAAAATGGATTCCTTATTCATCTCCTGTTACAGAACATTCGA
TTAAAAGTCAAACTAGTTTGATAACATCCTCAACAAGCTGTCAAACAATT
GATTATACTTCACGATTTCAAAGACCAGCTGATGCAAACCTACCcaagaa
aattgcaaaatcaCCATGTGTAAATAATACCAAGTCACGgttaaataaaa
caataaaggACACTTTGAAGCAATCACCGAAACAACAGAGTACTTTGTTC
ATTACGAACACCGACGAAGAAAGCATCAAGATCGTTAACGAATCTCCCAT
ACGAAATATTACATCACCAAAAATTTCCGAAGTACCCATCGAAGAAAGCA
AAGTCAAACTCGATATCACTAAGAATCTATCACGAAAACGGAAACGAGGG
TCACAGCCTACAATAGACGActttatgaagaaaaagaaacctCGAACAAA
TATGATGGAATTCAAGAAAGATTTATCAAGCCCCTCTAGGAGACGCTCGG
GACAGATTCAACAACAAATTTAAatGGAAGCTGTTGATTTGAAGAAAATC
AGGAAAAGTTTATTCGGTTTACCGACGACTAAAGTGAGTCGAAGTTTATT
TGGTGAAGTGGACCATGATGAAGTGAAACGAGATTTGGAACGTGAATACA
AAGAACTACTGGATGAAAAAACCAAATTATGGAACTTTGATTTCGAAAGA
TACCAACCAAGAGTGGATACAGAATCAAAGTTAAAATGGATTCCTTATTC
ATCTCCTGTTACAGAACATTCGATTAAAAGTCAAACTAGTTTGATAACAT
CCTCAACAAGCTGTCAAACAATTGATTATACTTCACGATTTCAAAGACCA
GCTGATGCAAACCTACCcaagaaaattgcaaaatcaCCATGTGTAAATAA
TACCAAGTCACGgttaaataaaacaataaaggACACTTTGAAGCAATCAC
CGAAACAACAGAGTACTTTGTTCATTACGAACACCGACGAAGAAAGCATC
AAGATCGTTAACGAATCTCCCATACGAAATATTACATCACCAAAAATTTC
CGAAGTACCCATCGAAGAAAGCAAAGTCAAACTCGATATCACTAAGAATC
TATCACGAAAACGGAAACGAGGGTCACAGCCTACAATAGACGActttatg
aagaaaaagaaacctCGAACAAATATGATGGAATTCAAGAAAGATTTATC
AAGCCCCTCTAGGAGACGCTCGGGACAGATTCAACAACAAATTTAAatGG
AAGCTGTTGATTTGAAGAAAATCAGGAAAAGTTTATTCGGTTTACCGACG
ACTAAAGTGAGTCGAAGTTTATTTGGTGAAGTGGACCATGATGAAGTGAA
ACGAGATTTGGAACGTGAATACAAAGAACTACTGGATGAAAAAACCAAAT
TATGGAACTTTGATTTCGAAAGATACCAACCAAGAGTGGATACAGAATCA
AAGTTAAAATGGATTCCTTATTCATCTCCTGTTACAGAACATTCGATTAA
AAGTCAAACTAGTTTGATAACATCCTCAACAAGCTGTCAAACAATTGATT
ATACTTCACGATTTCAAAGACCAGCTGATGCAAACCTACCcaagaaaatt
gcaaaatcaCCATGTGTAAATAATACCAAGTCACGgttaaataaaacaat
aaaggACACTTTGAAGCAATCACCGAAACAACAGAGTACTTTGTTCATTA
CGAACACCGACGAAGAAAGCATCAAGATCGTTAACGAATCTCCCATACGA
AATATTACATCACCAAAAATTTCCGAAGTACCCATCGAAGAAAGCAAAGT
CAAACTCGATATCACTAAGAATCTATCACGAAAACGGAAACGAGGGTCAC
AGCCTACAATAGACGActttatgaagaaaaagaaacctCGAACAAATATG
ATGGAATTCAAGAAAGATTTATCAAGCCCCTCTAGGAGACGCTCGGGACA
GATTCAACAACAAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000448XLOC_000448Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000712-proteinTCONS_00000712-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000712-exon-sc0000005-1491911889:762440..762628TCONS_00000712-exon-sc0000005-1491911889:762440..762628Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1510915933:762440..762628TCONS_00000712-exon-sc0000005-1510915933:762440..762628Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1575043694:762440..762628TCONS_00000712-exon-sc0000005-1575043694:762440..762628Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1491911889:762698..763345TCONS_00000712-exon-sc0000005-1491911889:762698..763345Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1510915933:762698..763345TCONS_00000712-exon-sc0000005-1510915933:762698..763345Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1575043694:762698..763345TCONS_00000712-exon-sc0000005-1575043694:762698..763345Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1491911889:764022..764107TCONS_00000712-exon-sc0000005-1491911889:764022..764107Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1510915933:764022..764107TCONS_00000712-exon-sc0000005-1510915933:764022..764107Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1575043694:764022..764107TCONS_00000712-exon-sc0000005-1575043694:764022..764107Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1491911889:764464..765012TCONS_00000712-exon-sc0000005-1491911889:764464..765012Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1510915933:764464..765012TCONS_00000712-exon-sc0000005-1510915933:764464..765012Clytia hemisphaericaexon
TCONS_00000712-exon-sc0000005-1575043694:764464..765012TCONS_00000712-exon-sc0000005-1575043694:764464..765012Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:762440..765012 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11236 0.0547845 0.031805 0.0622325 167.699 123.598 75.9121 77.6946 17.8716 20.231 16.5916 18.9884 13.8059 9.06038 25.4569 32.3346 35.5318 36.0947 20.6036 20.6853 19.0928 16.1351 14.0103 13.5865 13.3303 16.4189 40.8666 26.8425 4.98844 3.27182
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003175CDI
Vocabulary: Biological Process
TermDefinition
GO:0007050cell cycle arrest
Vocabulary: Molecular Function
TermDefinition
GO:0004861cyclin-dependent protein serine/threonine kinase inhibitor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007050 cell cycle arrest
cellular_component GO:0005634 nucleus
molecular_function GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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